CF503965

Overview
NameCF503965
Unique NameCF503965
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF503965_ssr7 microsatellite CF503965_ssr7:7..28. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: CYSP3_SOLLC (Cysteine proteinase 3 OS=Solanum lycopersicum GN=CYP-3 PE=2 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 1.221e-15
Identity = 33/88 (37.50%), Postives = 49/88 (55.68%), Query Frame = 1
Query:  139 DGEFSIVGYSLEVLTSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYL 402
            +G   +VG +   L+        F  + ++H K Y+S EE   R EIF DNLK I + NR+     SY LG+NEF+D++ +EF+   L
Sbjct:   42 NGILQVVGQTRSALS--------FARFAIRHRKRYDSVEEIKQRFEIFLDNLKMIRSHNRK---GLSYKLGINEFTDLTWDEFRKHKL 118          

HSP 2 Score: 47.7506 bits (112), Expect = 1.221e-15
Identity = 19/35 (54.29%), Postives = 23/35 (65.71%), Query Frame = 3
Query:  513 LPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVE 617
            LP++ DWRK G V+ VK Q  CG CW FS   A+E
Sbjct:  139 LPETKDWRKDGIVSPVKAQGKCGSCWTFSTTGALE 173          
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: CATH_MOUSE (Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 1.223e-15
Identity = 29/65 (44.62%), Postives = 42/65 (64.62%), Query Frame = 1
Query:  208 FESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYL 402
            F+SWM +H K+Y S E   HRL++F +N + I A N   Q   ++ + LN+FSDMS  E K+K+L
Sbjct:   33 FKSWMKQHQKTYSSVEYN-HRLQMFANNWRKIQAHN---QRNHTFKMALNQFSDMSFAEIKHKFL 93          

HSP 2 Score: 47.3654 bits (111), Expect = 1.223e-15
Identity = 21/45 (46.67%), Postives = 27/45 (60.00%), Query Frame = 3
Query:  486 SFFVQNVEDLPQSVDWRKKG-AVTHVKNQNPCGGCWAFSAVAAVE 617
            S +++     P S+DWRKKG  V+ VKNQ  C  CW FS   A+E
Sbjct:  105 SNYLRGTGPYPSSMDWRKKGNVVSPVKNQGACASCWTFSTTGALE 149          
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: CATK_BOVIN (Cathepsin K OS=Bos taurus GN=CTSK PE=2 SV=2)

HSP 1 Score: 57.7658 bits (138), Expect = 1.223e-15
Identity = 25/35 (71.43%), Postives = 28/35 (80.00%), Query Frame = 3
Query:  516 PQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEG 620
            P SVD+RKKG VT VKNQ  CG CWAFS+V A+EG
Sbjct:  116 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEG 150          

HSP 2 Score: 45.4394 bits (106), Expect = 1.223e-15
Identity = 26/70 (37.14%), Postives = 38/70 (54.29%), Query Frame = 1
Query:  208 FESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQI-TSSYWLGLNEFSDMSHEEFKNKYLTGLK 414
            +E W   + K Y S  +++ R  I++ NLKHI   N E  +   +Y L +N   DM+ EE   K +TGLK
Sbjct:   26 WELWKKTYRKQYNSKGDEISRRLIWEKNLKHISIHNLEASLGVHTYELAMNHLGDMTSEEVVQK-MTGLK 94          
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: CATL_DROME (Cathepsin L OS=Drosophila melanogaster GN=Cp1 PE=1 SV=2)

HSP 1 Score: 59.3066 bits (142), Expect = 1.585e-15
Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 3
Query:  513 LPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEG 620
            LP+SVDWR KGAVT VK+Q  CG CWAFS+  A+EG
Sbjct:  154 LPKSVDWRTKGAVTAVKDQGHCGSCWAFSSTGALEG 189          

HSP 2 Score: 43.5134 bits (101), Expect = 1.585e-15
Identity = 22/74 (29.73%), Postives = 44/74 (59.46%), Query Frame = 1
Query:  172 EVLTSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARN-RELQITSSYWLGLNEFSDMSHEEFK 390
            + ++  D ++E + ++ L+H K+Y+   E+  RL+IF +N   I   N R  +   S+ L +N+++D+ H EF+
Sbjct:   47 QAVSFADVVMEEWHTFKLEHRKNYQDETEERFRLKIFNENKHKIAKHNQRFAEGKVSFKLAVNKYADLLHHEFR 120          
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: CYSP5_DICDI (Cysteine proteinase 5 OS=Dictyostelium discoideum GN=cprE PE=2 SV=2)

HSP 1 Score: 52.7582 bits (125), Expect = 1.588e-15
Identity = 21/33 (63.64%), Postives = 24/33 (72.73%), Query Frame = 3
Query:  522 SVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEG 620
            S DWR +GAVT VKNQ  CGGCW+FS   + EG
Sbjct:  115 SKDWRSEGAVTPVKNQGQCGGCWSFSTTGSTEG 147          

HSP 2 Score: 50.0618 bits (118), Expect = 1.588e-15
Identity = 32/83 (38.55%), Postives = 46/83 (55.42%), Query Frame = 1
Query:  169 LEVLTSTDKLVEL-----FESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYL 402
            + V T+  +  EL     F  WM+ H KSY S EE   R  IFK N+ ++   N +    S   LGLN F+D+++EE++N YL
Sbjct:   12 VSVATAKQQFSELQYRNAFTDWMITHQKSYTS-EEFGARYNIFKANMDYVQQWNSK---GSETVLGLNNFADITNEEYRNTYL 90          
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: CATK_CANFA (Cathepsin K OS=Canis familiaris GN=CTSK PE=2 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 1.590e-15
Identity = 25/35 (71.43%), Postives = 28/35 (80.00%), Query Frame = 3
Query:  516 PQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEG 620
            P SVD+RKKG VT VKNQ  CG CWAFS+V A+EG
Sbjct:  117 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEG 151          

HSP 2 Score: 45.0542 bits (105), Expect = 1.590e-15
Identity = 26/70 (37.14%), Postives = 38/70 (54.29%), Query Frame = 1
Query:  208 FESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQI-TSSYWLGLNEFSDMSHEEFKNKYLTGLK 414
            ++ W   + K Y S  ++L R  I++ NLKHI   N E  +   +Y L +N   DM+ EE   K +TGLK
Sbjct:   27 WDLWKKTYRKQYNSKVDELSRRLIWEKNLKHISIHNLEASLGVHTYELAMNHLGDMTSEEVVQK-MTGLK 95          
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: CATK_PIG (Cathepsin K OS=Sus scrofa GN=CTSK PE=2 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 1.590e-15
Identity = 24/35 (68.57%), Postives = 28/35 (80.00%), Query Frame = 3
Query:  516 PQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEG 620
            P S+D+RKKG VT VKNQ  CG CWAFS+V A+EG
Sbjct:  117 PDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEG 151          

HSP 2 Score: 45.4394 bits (106), Expect = 1.590e-15
Identity = 26/70 (37.14%), Postives = 38/70 (54.29%), Query Frame = 1
Query:  208 FESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQI-TSSYWLGLNEFSDMSHEEFKNKYLTGLK 414
            +E W   + K Y S  +++ R  I++ NLKHI   N E  +   +Y L +N   DM+ EE   K +TGLK
Sbjct:   27 WELWKKTYRKQYNSKVDEISRRLIWEKNLKHISIHNLEASLGVHTYELAMNHLGDMTSEEVVQK-MTGLK 95          
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: CYSP1_MAIZE (Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 2.059e-15
Identity = 23/44 (52.27%), Postives = 28/44 (63.64%), Query Frame = 3
Query:  507 EDLPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEGINQIVT 638
            + LP   DWR  GAV  VKNQ  CG CW+FSA  A+EG + + T
Sbjct:  135 DGLPDDFDWRDHGAVGPVKNQGSCGSCWSFSASGALEGAHYLAT 178          

HSP 2 Score: 47.7506 bits (112), Expect = 2.059e-15
Identity = 26/65 (40.00%), Postives = 41/65 (63.08%), Query Frame = 1
Query:  208 FESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYL 402
            F S++ + GKSY+  +E  +RL +FKDNL+   AR  +L +  S   G+ +FSD++  EF+  YL
Sbjct:   48 FLSFVQRFGKSYKDADEHAYRLSVFKDNLRR--ARRHQL-LDPSAEHGVTKFSDLTPAEFRRTYL 109          
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: CATK_MOUSE (Cathepsin K OS=Mus musculus GN=Ctsk PE=2 SV=2)

HSP 1 Score: 56.225 bits (134), Expect = 2.066e-15
Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 3
Query:  513 LPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEG 620
            +P S+D+RKKG VT VKNQ  CG CWAFS+  A+EG
Sbjct:  115 VPDSIDYRKKGYVTPVKNQGQCGSCWAFSSAGALEG 150          

HSP 2 Score: 46.2098 bits (108), Expect = 2.066e-15
Identity = 28/80 (35.00%), Postives = 42/80 (52.50%), Query Frame = 1
Query:  178 LTSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQI-TSSYWLGLNEFSDMSHEEFKNKYLTGLK 414
            L+  + L   +E W   H K Y S  +++ R  I++ NLK I A N E  +   +Y L +N   DM+ EE   K +TGL+
Sbjct:   16 LSPEEMLDTQWELWKKTHQKQYNSKVDEISRRLIWEKNLKQISAHNLEASLGVHTYELAMNHLGDMTSEEVVQK-MTGLR 94          
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: CATV_GVXN (Viral cathepsin OS=Xestia c-nigrum granulosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 2.682e-15
Identity = 22/40 (55.00%), Postives = 27/40 (67.50%), Query Frame = 3
Query:  513 LPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEGINQI 632
            +P S DWR + +VT VK Q  CG CWAFSAVA +E +  I
Sbjct:  133 VPDSFDWRDRNSVTSVKMQKECGSCWAFSAVANIESLYHI 172          

HSP 2 Score: 49.2914 bits (116), Expect = 2.682e-15
Identity = 30/71 (42.25%), Postives = 41/71 (57.75%), Query Frame = 1
Query:  202 ELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGLK 414
            ELF  +++K+ K Y+  +EK  R EIFK NL  I+ARN    +  S    +N  +D+S  E   K LTGLK
Sbjct:   41 ELFNEFVVKYNKVYKDDQEKEARFEIFKQNLADINARN---ALEDSAMFEINSRADISSNELLQK-LTGLK 107          
The following BLAST results are available for this feature:
BLAST of CF503965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
CYSP3_SOLLC1.221e-1537.50Cysteine proteinase 3 OS=Solanum lycopersicum GN=C... [more]
CATH_MOUSE1.223e-1544.62Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1[more]
CATK_BOVIN1.223e-1571.43Cathepsin K OS=Bos taurus GN=CTSK PE=2 SV=2[more]
CATL_DROME1.585e-1569.44Cathepsin L OS=Drosophila melanogaster GN=Cp1 PE=1... [more]
CYSP5_DICDI1.588e-1563.64Cysteine proteinase 5 OS=Dictyostelium discoideum ... [more]
CATK_CANFA1.590e-1571.43Cathepsin K OS=Canis familiaris GN=CTSK PE=2 SV=1[more]
CATK_PIG1.590e-1568.57Cathepsin K OS=Sus scrofa GN=CTSK PE=2 SV=1[more]
CYSP1_MAIZE2.059e-1552.27Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=... [more]
CATK_MOUSE2.066e-1563.89Cathepsin K OS=Mus musculus GN=Ctsk PE=2 SV=2[more]
CATV_GVXN2.682e-1555.00Viral cathepsin OS=Xestia c-nigrum granulosis viru... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-453 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503965 ID=CF503965; Name=CF503965; organism=Citrus sinensis; type=EST; length=639bp
GTGGGGGAGAGAGAGAGAGAGAGAGAGATGAAAATGTTATCTTCCAATTG
TAAGTTGTTGCTTCGTCTTTCTTTGTGCGTGTCTCTCTTGATGATCATAT
GCATACGCTGCTCTAGCAGTAGAACTCTTCAAGGTCATGATGGTGAGTTC
TCCATTGTGGGGTATTCACTAGAGGTGTTGACATCCACGGACAAGCTGGT
TGAGCTATTCGAGTCATGGATGTTGAAACATGGGAAATCGTATGAAAGCA
CGGAAGAGAAGTTGCATAGATTGGAGATATTCAAAGACAACTTGAAGCAC
ATTGATGCGAGGAACAGAGAGCTGCAAATTACTAGTAGCTATTGGCTTGG
TCTGAATGAGTTTTCAGATATGAGCCACGAAGAGTTCAAGAACAAGTACT
TAACAGGACTCAAACCCGATGATGATGAGTTCCGCAGAAGGAGTCACCGC
GACTCCAGTAGTAGATCTTCTGCTAGCAGTAGTAATCATTTTTTGTACAA
AATGTAGAGGATTTGCCTCAATCCGTTGACTGGAGGAAGAAAGGAGCTGT
CACTCATGTCAAAAACCAAAATCCTTGTGGTGGATGTTGGGCATTTTCAG
CAGTAGCAGCAGTGGAGGGGATAAATCAGATAGTGACGG
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