CF503965

Overview
NameCF503965
Unique NameCF503965
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF503965_ssr7 microsatellite CF503965_ssr7:7..28. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: CATK_HUMAN (Cathepsin K OS=Homo sapiens GN=CTSK PE=1 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 2.685e-15
Identity = 25/35 (71.43%), Postives = 28/35 (80.00%), Query Frame = 3
Query:  516 PQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEG 620
            P SVD+RKKG VT VKNQ  CG CWAFS+V A+EG
Sbjct:  116 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEG 150          

HSP 2 Score: 44.2838 bits (103), Expect = 2.685e-15
Identity = 25/70 (35.71%), Postives = 38/70 (54.29%), Query Frame = 1
Query:  208 FESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQI-TSSYWLGLNEFSDMSHEEFKNKYLTGLK 414
            +E W   H K Y +  +++ R  I++ NLK+I   N E  +   +Y L +N   DM+ EE   K +TGLK
Sbjct:   26 WELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDMTSEEVVQK-MTGLK 94          
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: CATF_MOUSE (Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 3.459e-15
Identity = 26/42 (61.90%), Postives = 29/42 (69.05%), Query Frame = 3
Query:  498 QNVEDL-PQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEG 620
            +++ DL P   DWRKKGAVT VKNQ  CG CWAFS    VEG
Sbjct:  243 KSINDLAPPEWDWRKKGAVTEVKNQGMCGSCWAFSVTGNVEG 284          

HSP 2 Score: 44.2838 bits (103), Expect = 3.459e-15
Identity = 25/73 (34.25%), Postives = 40/73 (54.79%), Query Frame = 1
Query:  193 KLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGL 411
            K+  LF+ +M  + ++YES EE   RL +F  N+  I A+  +     +   G+ +FSD++ EEF   YL  L
Sbjct:  160 KMAPLFKDFMTTYNRTYESREEAQWRLTVFARNM--IRAQKIQALDRGTAQYGITKFSDLTEEEFHTIYLNPL 230          
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: CYSP7_DICDI (Cysteine proteinase 7 OS=Dictyostelium discoideum GN=cprG PE=1 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 3.459e-15
Identity = 22/37 (59.46%), Postives = 25/37 (67.57%), Query Frame = 3
Query:  510 DLPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEG 620
            D    VDWR +GAVT +KNQ  CGGCW+FS   A EG
Sbjct:  109 DASAQVDWRTQGAVTPIKNQGQCGGCWSFSTTGATEG 145          

HSP 2 Score: 46.595 bits (109), Expect = 3.459e-15
Identity = 30/83 (36.14%), Postives = 48/83 (57.83%), Query Frame = 1
Query:  169 LEVLTSTDKLVEL-----FESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYL 402
            + V T+  +L E+     F +WM+ H + Y S+EE   R  IFK N+ +++  N +    S   LGLN F+D+S+EE++  YL
Sbjct:   12 VSVATAKQQLSEVEYRNAFTNWMIAHQRHY-SSEEFNGRYNIFKANMDYVNEWNTK---GSETVLGLNVFADISNEEYRATYL 90          
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: CYSP1_HOMAM (Digestive cysteine proteinase 1 OS=Homarus americanus GN=LCP1 PE=1 SV=2)

HSP 1 Score: 52.373 bits (124), Expect = 4.538e-15
Identity = 21/32 (65.62%), Postives = 23/32 (71.88%), Query Frame = 3
Query:  525 VDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEG 620
            VDWR KGAVT VK+Q  CG CWAFS    +EG
Sbjct:  109 VDWRTKGAVTPVKDQGQCGSCWAFSTTGGIEG 140          

HSP 2 Score: 48.9062 bits (115), Expect = 4.538e-15
Identity = 26/70 (37.14%), Postives = 45/70 (64.29%), Query Frame = 1
Query:  208 FESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITS-SYWLGLNEFSDMSHEEFKNKYLTGLK 414
            +E +  K G+ Y   EE+ +RL +F DNL++I+  N++ +    +Y L +N+FSDM++E+F N  + G K
Sbjct:   20 WEEFKGKFGRKYVDLEEERYRLNVFLDNLQYIEEFNKKYERGEVTYNLAINQFSDMTNEKF-NAVMKGYK 88          
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: CATL1_CERAE (Cathepsin L1 OS=Cercopithecus aethiops GN=CTSL1 PE=1 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 5.891e-15
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 3
Query:  510 DLPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEG 620
            + P+SVDWR+KG VT VKNQ  CG CWAFSA  A+EG
Sbjct:  113 EAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEG 149          

HSP 2 Score: 40.817 bits (94), Expect = 5.891e-15
Identity = 24/79 (30.38%), Postives = 39/79 (49.37%), Query Frame = 1
Query:  157 VGYSLEVLTSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNREL-QITSSYWLGLNEFSDMSHEEFK 390
            +G +   LT    L   +  W   H + Y   EE   R  +++ N+K I+  N+E  Q   S+ + +N F DM+ EEF+
Sbjct:   12 LGIASATLTFNHSLEAQWTKWKAMHNRLYGMNEEGWRRA-VWEKNMKMIELHNQEYSQGKHSFTMAMNTFGDMTSEEFR 89          
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: CATL2_HUMAN (Cathepsin L2 OS=Homo sapiens GN=CTSL2 PE=1 SV=2)

HSP 1 Score: 65.0846 bits (157), Expect = 7.655e-15
Identity = 28/37 (75.68%), Postives = 30/37 (81.08%), Query Frame = 3
Query:  510 DLPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEG 620
            DLP+SVDWRKKG VT VKNQ  CG CWAFSA  A+EG
Sbjct:  113 DLPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEG 149          

HSP 2 Score: 35.4242 bits (80), Expect = 7.655e-15
Identity = 19/59 (32.20%), Postives = 32/59 (54.24%), Query Frame = 1
Query:  217 WMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNREL-QITSSYWLGLNEFSDMSHEEFK 390
            W   H + Y + EE   R  +++ N+K I+  N E  Q    + + +N F DM++EEF+
Sbjct:   32 WKATHRRLYGANEEGWRRA-VWEKNMKMIELHNGEYSQGKHGFTMAMNAFGDMTNEEFR 89          
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: CATV_GVCP (Viral cathepsin OS=Cydia pomonella granulosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 9.947e-15
Identity = 22/40 (55.00%), Postives = 28/40 (70.00%), Query Frame = 3
Query:  513 LPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEGINQI 632
            LP+++DWR K  VT VKNQ  CG CWAFS +A +E +  I
Sbjct:  124 LPETLDWRDKHGVTPVKNQMECGSCWAFSTIANIESLYNI 163          

HSP 2 Score: 45.8246 bits (107), Expect = 9.947e-15
Identity = 28/81 (34.57%), Postives = 48/81 (59.26%), Query Frame = 1
Query:  202 ELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWL-GLNEFSDMSHEEFKNK---YLTGLKPDDDEF 432
            ELF+++ +K+ K+Y S EE+  +LE FK+NLK I+ +N    + S Y +  +NE+SD++      +   +  GLK +   F
Sbjct:   30 ELFKNFAIKYNKTYVSDEERAIKLENFKNNLKMINEKN----MASKYAVFDINEYSDLNKNALLRRTTGFRLGLKKNPSAF 106          
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: CATLL_PHACE (Cathepsin L-like proteinase OS=Phaedon cochleariae PE=2 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 9.955e-15
Identity = 21/39 (53.85%), Postives = 26/39 (66.67%), Query Frame = 3
Query:  516 PQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEGINQI 632
            P+S+DWR KG V  V+NQ  CG CWA S  AA+E  + I
Sbjct:  111 PESIDWRSKGVVLPVRNQGECGSCWALSTAAAIESQSAI 149          

HSP 2 Score: 46.9802 bits (110), Expect = 9.955e-15
Identity = 23/65 (35.38%), Postives = 41/65 (63.08%), Query Frame = 1
Query:  202 ELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQI-TSSYWLGLNEFSDMSHEEFKN 393
            EL+  +   H ++Y+S  E+  R  IF+D L+ I   N + +   S+Y+L +N+FSD++ EEF++
Sbjct:   21 ELWADFKKTHARTYKSLREEKLRFNIFQDTLRQIAEHNVKYENGESTYYLAINKFSDITDEEFRD 85          
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: LMCPB_LEIME (Cysteine proteinase B OS=Leishmania mexicana GN=LMCPB PE=2 SV=2)

HSP 1 Score: 58.9214 bits (141), Expect = 1.282e-14
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 3
Query:  513 LPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEG 620
            +P +VDWR+KGAVT VK+Q  CG CWAFSAV  +EG
Sbjct:  126 VPDAVDWREKGAVTPVKDQGACGSCWAFSAVGNIEG 161          

HSP 2 Score: 40.817 bits (94), Expect = 1.282e-14
Identity = 25/71 (35.21%), Postives = 37/71 (52.11%), Query Frame = 1
Query:  205 LFESWMLKHGKSYESTEEKLHRLEIFKDNL---KHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTG 408
            LFE +   +G++YE+  E+  RL  F+ NL   +   ARN   Q       G+ +F D+S  EF  +YL G
Sbjct:   37 LFEEFKRTYGRAYETLAEEQQRLANFERNLELMREHQARNPHAQ------FGITKFFDLSEAEFAARYLNG 101          
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: CYSP2_LEIPI (Cysteine proteinase 2 OS=Leishmania pifanoi GN=CYS2 PE=1 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 1.282e-14
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 3
Query:  513 LPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEG 620
            +P +VDWR+KGAVT VK+Q  CG CWAFSAV  +EG
Sbjct:  126 VPDAVDWREKGAVTPVKDQGACGSCWAFSAVGNIEG 161          

HSP 2 Score: 40.817 bits (94), Expect = 1.282e-14
Identity = 25/71 (35.21%), Postives = 37/71 (52.11%), Query Frame = 1
Query:  205 LFESWMLKHGKSYESTEEKLHRLEIFKDNL---KHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTG 408
            LFE +   +G++YE+  E+  RL  F+ NL   +   ARN   Q       G+ +F D+S  EF  +YL G
Sbjct:   37 LFEEFKRTYGRAYETLAEEQQRLANFERNLELMREHQARNPHAQ------FGITKFFDLSEAEFAARYLNG 101          
The following BLAST results are available for this feature:
BLAST of CF503965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
CATK_HUMAN2.685e-1571.43Cathepsin K OS=Homo sapiens GN=CTSK PE=1 SV=1[more]
CATF_MOUSE3.459e-1561.90Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1[more]
CYSP7_DICDI3.459e-1559.46Cysteine proteinase 7 OS=Dictyostelium discoideum ... [more]
CYSP1_HOMAM4.538e-1565.63Digestive cysteine proteinase 1 OS=Homarus america... [more]
CATL1_CERAE5.891e-1567.57Cathepsin L1 OS=Cercopithecus aethiops GN=CTSL1 PE... [more]
CATL2_HUMAN7.655e-1575.68Cathepsin L2 OS=Homo sapiens GN=CTSL2 PE=1 SV=2[more]
CATV_GVCP9.947e-1555.00Viral cathepsin OS=Cydia pomonella granulosis viru... [more]
CATLL_PHACE9.955e-1553.85Cathepsin L-like proteinase OS=Phaedon cochleariae... [more]
LMCPB_LEIME1.282e-1466.67Cysteine proteinase B OS=Leishmania mexicana GN=LM... [more]
CYSP2_LEIPI1.282e-1466.67Cysteine proteinase 2 OS=Leishmania pifanoi GN=CYS... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-453 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503965 ID=CF503965; Name=CF503965; organism=Citrus sinensis; type=EST; length=639bp
GTGGGGGAGAGAGAGAGAGAGAGAGAGATGAAAATGTTATCTTCCAATTG
TAAGTTGTTGCTTCGTCTTTCTTTGTGCGTGTCTCTCTTGATGATCATAT
GCATACGCTGCTCTAGCAGTAGAACTCTTCAAGGTCATGATGGTGAGTTC
TCCATTGTGGGGTATTCACTAGAGGTGTTGACATCCACGGACAAGCTGGT
TGAGCTATTCGAGTCATGGATGTTGAAACATGGGAAATCGTATGAAAGCA
CGGAAGAGAAGTTGCATAGATTGGAGATATTCAAAGACAACTTGAAGCAC
ATTGATGCGAGGAACAGAGAGCTGCAAATTACTAGTAGCTATTGGCTTGG
TCTGAATGAGTTTTCAGATATGAGCCACGAAGAGTTCAAGAACAAGTACT
TAACAGGACTCAAACCCGATGATGATGAGTTCCGCAGAAGGAGTCACCGC
GACTCCAGTAGTAGATCTTCTGCTAGCAGTAGTAATCATTTTTTGTACAA
AATGTAGAGGATTTGCCTCAATCCGTTGACTGGAGGAAGAAAGGAGCTGT
CACTCATGTCAAAAACCAAAATCCTTGTGGTGGATGTTGGGCATTTTCAG
CAGTAGCAGCAGTGGAGGGGATAAATCAGATAGTGACGG
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