CF503965

Overview
NameCF503965
Unique NameCF503965
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF503965_ssr7 microsatellite CF503965_ssr7:7..28. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: A494_ARATH (Probable cysteine proteinase A494 OS=Arabidopsis thaliana GN=At2g21430 PE=2 SV=2)

HSP 1 Score: 58.5362 bits (140), Expect = 1.290e-14
Identity = 23/44 (52.27%), Postives = 31/44 (70.45%), Query Frame = 3
Query:  507 EDLPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEGINQIVT 638
            ++LP+  DWR +GAVT VKNQ  CG CW+FS   A+EG + + T
Sbjct:  130 QNLPEEFDWRDRGAVTPVKNQGSCGSCWSFSTTGALEGAHFLAT 173          

HSP 2 Score: 41.2022 bits (95), Expect = 1.290e-14
Identity = 26/77 (33.77%), Postives = 44/77 (57.14%), Query Frame = 1
Query:  172 EVLTSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYL 402
            +VL+S D     F  +  K GK Y S EE  +R  +FK NL     R++++  ++ +  G+ +FSD++  EF+ K+L
Sbjct:   40 KVLSSEDH----FTLFKKKFGKVYGSIEEHYYRFSVFKANLLRA-MRHQKMDPSARH--GVTQFSDLTRSEFRRKHL 109          
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: CATL1_PIG (Cathepsin L1 OS=Sus scrofa GN=CTSL1 PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 1.292e-14
Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 3
Query:  504 VEDLPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEG 620
            V ++P+SVDWR+KG VT VKNQ  CG CWAFSA  A+EG
Sbjct:  111 VLEVPKSVDWREKGYVTAVKNQGQCGSCWAFSATGALEG 149          

HSP 2 Score: 38.5058 bits (88), Expect = 1.292e-14
Identity = 20/59 (33.90%), Postives = 33/59 (55.93%), Query Frame = 1
Query:  217 WMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNREL-QITSSYWLGLNEFSDMSHEEFK 390
            W   HG+ Y   EE   R  +++ N+K I+  N+E  Q    + + +N F DM++EEF+
Sbjct:   32 WKATHGRLYGMNEEGWRRA-VWEKNMKMIELHNQEYSQGKHGFSMAMNAFGDMTNEEFR 89          
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: CATL1_HUMAN (Cathepsin L1 OS=Homo sapiens GN=CTSL1 PE=1 SV=2)

HSP 1 Score: 60.077 bits (144), Expect = 1.679e-14
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 3
Query:  510 DLPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEG 620
            + P+SVDWR+KG VT VKNQ  CG CWAFSA  A+EG
Sbjct:  113 EAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEG 149          

HSP 2 Score: 39.2762 bits (90), Expect = 1.679e-14
Identity = 23/79 (29.11%), Postives = 39/79 (49.37%), Query Frame = 1
Query:  157 VGYSLEVLTSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITS-SYWLGLNEFSDMSHEEFK 390
            +G +   LT    L   +  W   H + Y   EE   R  +++ N+K I+  N+E +    S+ + +N F DM+ EEF+
Sbjct:   12 LGIASATLTFDHSLEAQWTKWKAMHNRLYGMNEEGWRRA-VWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFR 89          
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: CATV_NPVAH (Viral cathepsin OS=Adoxophyes honmai nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 2.181e-14
Identity = 27/74 (36.49%), Postives = 44/74 (59.46%), Query Frame = 1
Query:  208 FESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKY--LTGLKPDD 423
            FE++++ + K Y  T+ K +R +IFK NL+ I+ +N+   +  S    +N+FSD+S  E   KY  LT  KP +
Sbjct:   32 FETFIINYNKQYPDTKTKNYRFKIFKQNLEDINEKNK---LNDSAIYNINKFSDLSKNELLTKYTGLTSKKPSN 102          

HSP 2 Score: 47.7506 bits (112), Expect = 2.181e-14
Identity = 19/42 (45.24%), Postives = 27/42 (64.29%), Query Frame = 3
Query:  507 EDLPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEGINQI 632
            ++LPQ+ DWR    +T VK+Q  CG CWA +AV  +E +  I
Sbjct:  124 DELPQNFDWRVNNKMTSVKDQGACGSCWAHAAVGTLETLYAI 165          
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: CATF_HUMAN (Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 2.806e-14
Identity = 25/42 (59.52%), Postives = 28/42 (66.67%), Query Frame = 3
Query:  498 QNVEDL-PQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEG 620
            ++V DL P   DWR KGAVT VK+Q  CG CWAFS    VEG
Sbjct:  265 KSVGDLAPPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEG 306          

HSP 2 Score: 45.8246 bits (107), Expect = 2.806e-14
Identity = 23/73 (31.51%), Postives = 43/73 (58.90%), Query Frame = 1
Query:  193 KLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGL 411
            K+  +F+++++ + ++YES EE   RL +F +N+          + T+ Y  G+ +FSD++ EEF+  YL  L
Sbjct:  182 KMASIFKNFVITYNRTYESKEEARWRLSVFVNNMVRAQKIQALDRGTAQY--GVTKFSDLTEEEFRTIYLNTL 252          
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: CYSP_TRYCR (Cruzipain OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 2.809e-14
Identity = 22/34 (64.71%), Postives = 26/34 (76.47%), Query Frame = 3
Query:  516 PQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVE 617
            P +VDWR +GAVT VK+Q  CG CWAFSA+  VE
Sbjct:  124 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVE 157          

HSP 2 Score: 44.669 bits (104), Expect = 2.809e-14
Identity = 24/77 (31.17%), Postives = 38/77 (49.35%), Query Frame = 1
Query:  178 LTSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTG 408
            L + + L   F  +  KHG+ YES  E+  RL +F++NL                  G+  FSD++ EEF+++Y  G
Sbjct:   28 LHAEETLTSQFAEFKQKHGRVYESAAEEAFRLSVFRENL---FLARLHAAANPHATFGVTPFSDLTREEFRSRYHNG 101          
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: ALEU_HORVU (Thiol protease aleurain OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 2.828e-14
Identity = 26/61 (42.62%), Postives = 38/61 (62.30%), Query Frame = 1
Query:  208 FESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFK 390
            F  + +++GKSYES  E   R  IF ++L+ + + NR+      Y LG+N FSDMS EEF+
Sbjct:   61 FARFAVRYGKSYESAAEVRRRFRIFSESLEEVRSTNRK---GLPYRLGINRFSDMSWEEFQ 118          

HSP 2 Score: 48.1358 bits (113), Expect = 2.828e-14
Identity = 19/35 (54.29%), Postives = 24/35 (68.57%), Query Frame = 3
Query:  513 LPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVE 617
            LP++ DWR+ G V+ VKNQ  CG CW FS   A+E
Sbjct:  144 LPETKDWREDGIVSPVKNQAHCGSCWTFSTTGALE 178          
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: CYSP2_MAIZE (Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 2.829e-14
Identity = 26/61 (42.62%), Postives = 39/61 (63.93%), Query Frame = 1
Query:  208 FESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFK 390
            F  + +++GKSYES  E   R  IF ++L+ + + NR+     SY LG+N F+DMS EEF+
Sbjct:   59 FARFAVRYGKSYESAAEVHKRFRIFSESLQLVRSTNRK---GLSYRLGINRFADMSWEEFR 116          

HSP 2 Score: 48.9062 bits (115), Expect = 2.829e-14
Identity = 19/35 (54.29%), Postives = 24/35 (68.57%), Query Frame = 3
Query:  513 LPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVE 617
            LP++ DWR+ G V+ VKNQ  CG CW FS   A+E
Sbjct:  143 LPETKDWREDGIVSPVKNQGHCGSCWTFSTTGALE 177          
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: CYSP1_DICDI (Cysteine proteinase 1 OS=Dictyostelium discoideum GN=cprA PE=1 SV=2)

HSP 1 Score: 54.299 bits (129), Expect = 2.833e-14
Identity = 21/39 (53.85%), Postives = 26/39 (66.67%), Query Frame = 3
Query:  504 VEDLPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEG 620
            +  +P + DWR +GAVT VKNQ  CG CW+FS    VEG
Sbjct:  115 INSIPTAFDWRTRGAVTPVKNQGQCGSCWSFSTTGNVEG 153          

HSP 2 Score: 44.2838 bits (103), Expect = 2.833e-14
Identity = 27/60 (45.00%), Postives = 35/60 (58.33%), Query Frame = 1
Query:  226 KHGKSYESTEEKLHRLEIFKDNLKHIDARNR-ELQITSSYWLGLNEFSDMSHEEFKNKYL 402
            K  K Y S EE L R EIFK NL  I+  N   +   +    G+N+F+D+S +EFKN YL
Sbjct:   35 KFNKKY-SHEEYLERFEIFKSNLGKIEELNLIAINHKADTKFGVNKFADLSSDEFKNYYL 93          
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: CATL1_CANFA (Cathepsin L1 OS=Canis familiaris GN=CTSL1 PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 2.835e-14
Identity = 25/37 (67.57%), Postives = 30/37 (81.08%), Query Frame = 3
Query:  510 DLPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEG 620
            ++P+SVDWR+KG VT VKNQ  CG CWAFSA  A+EG
Sbjct:  113 EIPKSVDWREKGYVTPVKNQGQCGSCWAFSATGALEG 149          

HSP 2 Score: 37.3502 bits (85), Expect = 2.835e-14
Identity = 20/59 (33.90%), Postives = 32/59 (54.24%), Query Frame = 1
Query:  217 WMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNREL-QITSSYWLGLNEFSDMSHEEFK 390
            W   H + Y   EE   R  +++ N+K I+  NRE  Q    + + +N F DM++EEF+
Sbjct:   32 WKATHRRLYGMNEEGWRRA-VWEKNMKMIELHNREYSQGKHGFTMAMNAFGDMTNEEFR 89          
The following BLAST results are available for this feature:
BLAST of CF503965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
A494_ARATH1.290e-1452.27Probable cysteine proteinase A494 OS=Arabidopsis t... [more]
CATL1_PIG1.292e-1466.67Cathepsin L1 OS=Sus scrofa GN=CTSL1 PE=2 SV=1[more]
CATL1_HUMAN1.679e-1467.57Cathepsin L1 OS=Homo sapiens GN=CTSL1 PE=1 SV=2[more]
CATV_NPVAH2.181e-1436.49Viral cathepsin OS=Adoxophyes honmai nucleopolyhed... [more]
CATF_HUMAN2.806e-1459.52Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1[more]
CYSP_TRYCR2.809e-1464.71Cruzipain OS=Trypanosoma cruzi PE=1 SV=1[more]
ALEU_HORVU2.828e-1442.62Thiol protease aleurain OS=Hordeum vulgare PE=2 SV... [more]
CYSP2_MAIZE2.829e-1442.62Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=... [more]
CYSP1_DICDI2.833e-1453.85Cysteine proteinase 1 OS=Dictyostelium discoideum ... [more]
CATL1_CANFA2.835e-1467.57Cathepsin L1 OS=Canis familiaris GN=CTSL1 PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-453 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503965 ID=CF503965; Name=CF503965; organism=Citrus sinensis; type=EST; length=639bp
GTGGGGGAGAGAGAGAGAGAGAGAGAGATGAAAATGTTATCTTCCAATTG
TAAGTTGTTGCTTCGTCTTTCTTTGTGCGTGTCTCTCTTGATGATCATAT
GCATACGCTGCTCTAGCAGTAGAACTCTTCAAGGTCATGATGGTGAGTTC
TCCATTGTGGGGTATTCACTAGAGGTGTTGACATCCACGGACAAGCTGGT
TGAGCTATTCGAGTCATGGATGTTGAAACATGGGAAATCGTATGAAAGCA
CGGAAGAGAAGTTGCATAGATTGGAGATATTCAAAGACAACTTGAAGCAC
ATTGATGCGAGGAACAGAGAGCTGCAAATTACTAGTAGCTATTGGCTTGG
TCTGAATGAGTTTTCAGATATGAGCCACGAAGAGTTCAAGAACAAGTACT
TAACAGGACTCAAACCCGATGATGATGAGTTCCGCAGAAGGAGTCACCGC
GACTCCAGTAGTAGATCTTCTGCTAGCAGTAGTAATCATTTTTTGTACAA
AATGTAGAGGATTTGCCTCAATCCGTTGACTGGAGGAAGAAAGGAGCTGT
CACTCATGTCAAAAACCAAAATCCTTGTGGTGGATGTTGGGCATTTTCAG
CAGTAGCAGCAGTGGAGGGGATAAATCAGATAGTGACGG
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