CF503965

Overview
NameCF503965
Unique NameCF503965
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF503965_ssr7 microsatellite CF503965_ssr7:7..28. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: CATJ_RAT (Cathepsin J OS=Rattus norvegicus GN=Ctsj PE=2 SV=2)

HSP 1 Score: 56.225 bits (134), Expect = 2.835e-14
Identity = 23/36 (63.89%), Postives = 27/36 (75.00%), Query Frame = 3
Query:  513 LPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEG 620
            LP   DWRK+G VT V+NQ  CG CWAF+AV A+EG
Sbjct:  114 LPNFKDWRKEGYVTPVRNQGKCGSCWAFAAVGAIEG 149          

HSP 2 Score: 42.3578 bits (98), Expect = 2.835e-14
Identity = 21/62 (33.87%), Postives = 38/62 (61.29%), Query Frame = 1
Query:  208 FESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQI-TSSYWLGLNEFSDMSHEEFK 390
            ++ W  K+ KSY   EE+L R  ++++NLK I   N+E  +  + + + +N F+D + EEF+
Sbjct:   29 WQDWKTKYAKSYSPVEEELKR-AVWEENLKMIQLHNKENGLGKNGFTMEMNAFADTTGEEFR 89          
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: CATQ_RAT (Cathepsin Q OS=Rattus norvegicus GN=Ctsq PE=2 SV=1)

HSP 1 Score: 48.9062 bits (115), Expect = 4.781e-14
Identity = 23/63 (36.51%), Postives = 43/63 (68.25%), Query Frame = 1
Query:  208 FESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQI-TSSYWLGLNEFSDMSHEEFKN 393
            ++ W +K+ K Y   EE L R+ ++++N+K I+  NRE  +  ++Y + +N+F+DM+ EEFK+
Sbjct:   29 WQEWKIKYEKLYSPEEEVLKRV-VWEENVKKIELHNRENSLGKNTYTMEINDFADMTDEEFKD 90          

HSP 2 Score: 48.9062 bits (115), Expect = 4.781e-14
Identity = 19/36 (52.78%), Postives = 23/36 (63.89%), Query Frame = 3
Query:  513 LPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEG 620
            LP+ VDWR +G VT V+ Q  C  CWAF    A+EG
Sbjct:  125 LPKFVDWRNEGYVTRVRKQGGCSSCWAFPVTGAIEG 160          
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: CATS_BOVIN (Cathepsin S OS=Bos taurus GN=CTSS PE=1 SV=2)

HSP 1 Score: 57.7658 bits (138), Expect = 4.786e-14
Identity = 24/37 (64.86%), Postives = 28/37 (75.68%), Query Frame = 3
Query:  507 EDLPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVE 617
            + LP S+DWR+KG VT VK Q  CG CWAFSAV A+E
Sbjct:  113 QKLPDSMDWREKGCVTEVKYQGACGSCWAFSAVGALE 149          

HSP 2 Score: 40.0466 bits (92), Expect = 4.786e-14
Identity = 21/60 (35.00%), Postives = 33/60 (55.00%), Query Frame = 1
Query:  208 FESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQI-TSSYWLGLNEFSDMSHEE 384
            ++ W   +GK Y+   E++ R  I++ NLK +   N E  +   SY LG+N   DM+ EE
Sbjct:   28 WDLWKKTYGKQYKEKNEEVARRLIWEKNLKTVTLHNLEHSMGMHSYELGMNHLGDMTSEE 87          
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: CATL2_PARTE (Cathepsin L 2 OS=Paramecium tetraurelia GN=GSPATT00022898001 PE=3 SV=2)

HSP 1 Score: 56.225 bits (134), Expect = 4.793e-14
Identity = 24/67 (35.82%), Postives = 45/67 (67.16%), Query Frame = 1
Query:  205 LFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLT 405
            L+ +W +K+ + Y S  ++++R ++F DNL +I A     + +++Y L LN+F+DMS +EF + YL+
Sbjct:   25 LYANWKMKYNRRYTSQRDEMYRFKVFSDNLNYIRAFQDSTE-SATYTLELNQFADMSQQEFASTYLS 90          

HSP 2 Score: 41.5874 bits (96), Expect = 4.793e-14
Identity = 20/33 (60.61%), Postives = 21/33 (63.64%), Query Frame = 3
Query:  525 VDW--RKKGAVTHVKNQNPCGGCWAFSAVAAVE 617
            VDW   KK     VKNQ  CG CWAFSAV A+E
Sbjct:  113 VDWTDNKKVKYPAVKNQGSCGSCWAFSAVGALE 145          
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: CYSP_PEA (Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 6.201e-14
Identity = 24/43 (55.81%), Postives = 31/43 (72.09%), Query Frame = 3
Query:  510 DLPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEGINQIVT 638
            +LP+  DWR+KGAVT VK+Q  CG CWAFS   A+EG + + T
Sbjct:  131 NLPEDFDWREKGAVTPVKDQGSCGSCWAFSTTGALEGAHYLAT 173          

HSP 2 Score: 37.7354 bits (86), Expect = 6.201e-14
Identity = 26/70 (37.14%), Postives = 42/70 (60.00%), Query Frame = 1
Query:  208 FESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDAR-NRELQITSSYWLGLNEFSDMSHEEFKNKYLTGLK 414
            F S+  K  KSY + EE  +R  +FK NL  I A+ ++    T+ +  G+ +FSD++  EF+ ++L GLK
Sbjct:   48 FTSFKSKFSKSYATKEEHDYRFGVFKSNL--IKAKLHQNRDPTAEH--GITKFSDLTASEFRRQFL-GLK 112          
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: CATR_MOUSE (Cathepsin R OS=Mus musculus GN=Ctsr PE=2 SV=1)

HSP 1 Score: 50.0618 bits (118), Expect = 6.217e-14
Identity = 20/35 (57.14%), Postives = 24/35 (68.57%), Query Frame = 3
Query:  513 LPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVE 617
            LP+ VDWRKKG VT V+ Q  C  CWAF+   A+E
Sbjct:  115 LPKFVDWRKKGYVTPVRRQGDCDACWAFAVTGAIE 149          

HSP 2 Score: 47.3654 bits (111), Expect = 6.217e-14
Identity = 27/82 (32.93%), Postives = 45/82 (54.88%), Query Frame = 1
Query:  148 FSIVGYSLEVLTSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQI-TSSYWLGLNEFSDMSHEEFK 390
            F  +G +  V      L   ++ W +K+ KSY   EEKL R+ ++++ LK I   NRE  +  + + + +NEF D + EEF+
Sbjct:    9 FLYLGVASGVPVLDSSLDAEWQDWKIKYNKSYSLKEEKLKRV-VWEEKLKMIKLHNRENSLGKNGFTMKMNEFGDQTDEEFR 89          
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: CYSP4_DICDI (Cysteine proteinase 4 OS=Dictyostelium discoideum GN=cprD PE=2 SV=2)

HSP 1 Score: 53.9138 bits (128), Expect = 8.012e-14
Identity = 21/39 (53.85%), Postives = 28/39 (71.79%), Query Frame = 3
Query:  522 SVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEGINQIVT 638
            +VDWR +GAVT +KNQ  CGGCW+FS   + EG + I +
Sbjct:  114 TVDWRAQGAVTPIKNQGQCGGCWSFSTTGSTEGAHFIAS 152          

HSP 2 Score: 43.1282 bits (100), Expect = 8.012e-14
Identity = 24/65 (36.92%), Postives = 40/65 (61.54%), Query Frame = 1
Query:  208 FESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYL 402
            F +WM  H ++Y S+EE   R +IFK N+ ++   N +   T    LGLN F+D++++E++  YL
Sbjct:   30 FTNWMQAHQRTY-SSEEFNARYQIFKSNMDYVHQWNSKGGETV---LGLNVFADITNQEYRTTYL 90          
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: CATL2_BOVIN (Cathepsin L2 OS=Bos taurus GN=CTSL2 PE=2 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 8.076e-14
Identity = 26/37 (70.27%), Postives = 29/37 (78.38%), Query Frame = 3
Query:  510 DLPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEG 620
            D+P+SVDW KKG VT VKNQ  CG CWAFSA  A+EG
Sbjct:  113 DVPKSVDWTKKGYVTPVKNQGQCGSCWAFSATGALEG 149          

HSP 2 Score: 35.4242 bits (80), Expect = 8.076e-14
Identity = 19/62 (30.65%), Postives = 33/62 (53.23%), Query Frame = 1
Query:  208 FESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNREL-QITSSYWLGLNEFSDMSHEEFK 390
            +  W   H + Y   EE+  R  +++ N K ID  N+E  +    + + +N F DM++EEF+
Sbjct:   29 WHQWKATHRRLYGMNEEEWRRA-VWEKNKKIIDLHNQEYSEGKHGFRMAMNAFGDMTNEEFR 89          
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: CATL1_BOVIN (Cathepsin L1 OS=Bos taurus GN=CTSL1 PE=1 SV=3)

HSP 1 Score: 61.6178 bits (148), Expect = 8.076e-14
Identity = 26/37 (70.27%), Postives = 29/37 (78.38%), Query Frame = 3
Query:  510 DLPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEG 620
            D+P+SVDW KKG VT VKNQ  CG CWAFSA  A+EG
Sbjct:  113 DVPKSVDWTKKGYVTPVKNQGQCGSCWAFSATGALEG 149          

HSP 2 Score: 35.4242 bits (80), Expect = 8.076e-14
Identity = 19/62 (30.65%), Postives = 33/62 (53.23%), Query Frame = 1
Query:  208 FESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNREL-QITSSYWLGLNEFSDMSHEEFK 390
            +  W   H + Y   EE+  R  +++ N K ID  N+E  +    + + +N F DM++EEF+
Sbjct:   29 WHQWKATHRRLYGMNEEEWRRA-VWEKNKKIIDLHNQEYSEGKHGFRMAMNAFGDMTNEEFR 89          
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: MEX1_JACME (Mexicain OS=Jacaratia mexicana PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.920e-14
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 3
Query:  516 PQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEGINQIVT 638
            P+S+DWR+KGAVT VKNQNPCG CWAFS VA +EGIN+I+T
Sbjct:    2 PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIIT 42          
The following BLAST results are available for this feature:
BLAST of CF503965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
CATJ_RAT2.835e-1463.89Cathepsin J OS=Rattus norvegicus GN=Ctsj PE=2 SV=2[more]
CATQ_RAT4.781e-1436.51Cathepsin Q OS=Rattus norvegicus GN=Ctsq PE=2 SV=1[more]
CATS_BOVIN4.786e-1464.86Cathepsin S OS=Bos taurus GN=CTSS PE=1 SV=2[more]
CATL2_PARTE4.793e-1435.82Cathepsin L 2 OS=Paramecium tetraurelia GN=GSPATT0... [more]
CYSP_PEA6.201e-1455.81Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1[more]
CATR_MOUSE6.217e-1457.14Cathepsin R OS=Mus musculus GN=Ctsr PE=2 SV=1[more]
CYSP4_DICDI8.012e-1453.85Cysteine proteinase 4 OS=Dictyostelium discoideum ... [more]
CATL2_BOVIN8.076e-1470.27Cathepsin L2 OS=Bos taurus GN=CTSL2 PE=2 SV=1[more]
CATL1_BOVIN8.076e-1470.27Cathepsin L1 OS=Bos taurus GN=CTSL1 PE=1 SV=3[more]
MEX1_JACME8.920e-1475.61Mexicain OS=Jacaratia mexicana PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-453 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503965 ID=CF503965; Name=CF503965; organism=Citrus sinensis; type=EST; length=639bp
GTGGGGGAGAGAGAGAGAGAGAGAGAGATGAAAATGTTATCTTCCAATTG
TAAGTTGTTGCTTCGTCTTTCTTTGTGCGTGTCTCTCTTGATGATCATAT
GCATACGCTGCTCTAGCAGTAGAACTCTTCAAGGTCATGATGGTGAGTTC
TCCATTGTGGGGTATTCACTAGAGGTGTTGACATCCACGGACAAGCTGGT
TGAGCTATTCGAGTCATGGATGTTGAAACATGGGAAATCGTATGAAAGCA
CGGAAGAGAAGTTGCATAGATTGGAGATATTCAAAGACAACTTGAAGCAC
ATTGATGCGAGGAACAGAGAGCTGCAAATTACTAGTAGCTATTGGCTTGG
TCTGAATGAGTTTTCAGATATGAGCCACGAAGAGTTCAAGAACAAGTACT
TAACAGGACTCAAACCCGATGATGATGAGTTCCGCAGAAGGAGTCACCGC
GACTCCAGTAGTAGATCTTCTGCTAGCAGTAGTAATCATTTTTTGTACAA
AATGTAGAGGATTTGCCTCAATCCGTTGACTGGAGGAAGAAAGGAGCTGT
CACTCATGTCAAAAACCAAAATCCTTGTGGTGGATGTTGGGCATTTTCAG
CAGTAGCAGCAGTGGAGGGGATAAATCAGATAGTGACGG
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