CF503965

Overview
NameCF503965
Unique NameCF503965
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF503965_ssr7 microsatellite CF503965_ssr7:7..28. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: CFAD_DICDI (Counting factor associated protein D OS=Dictyostelium discoideum GN=cfaD PE=1 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 1.036e-13
Identity = 18/43 (41.86%), Postives = 28/43 (65.12%), Query Frame = 3
Query:  498 QNVEDLPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEGIN 626
            +++  +P +VDWR +  VT VK+Q  CG CW F +  ++EG N
Sbjct:  304 ESLRSIPSTVDWRNQNCVTPVKDQGICGSCWTFGSTGSLEGTN 346          

HSP 2 Score: 45.8246 bits (107), Expect = 1.036e-13
Identity = 29/83 (34.94%), Postives = 45/83 (54.22%), Query Frame = 1
Query:  139 DGEFSIVGYSLEVLTSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEF 387
            DG FS +G +L  L   ++   LF+ +  ++ K Y S +E   R   FK   K I   N +    SSY LG+N ++D+S++EF
Sbjct:  204 DGLFSSIGDNL--LAKEEQASNLFKEYKAQYNKEYSSQDEHDERFINFKAARKIIATHNAK---ESSYKLGMNHYADLSNKEF 281          
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: CATV_NPVOP (Viral cathepsin OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 1.050e-13
Identity = 32/73 (43.84%), Postives = 44/73 (60.27%), Query Frame = 1
Query:  193 KLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGL 411
            K    FE ++ K  K+Y S  EKLHR +IF+ NL+ I  +N   Q  S+    +N+FSD+S EE  +KY TGL
Sbjct:   23 KAPNYFEDFLHKFNKNYSSESEKLHRFKIFQHNLEEIINKN---QNDSTAQYEINKFSDLSKEEAISKY-TGL 91          

HSP 2 Score: 44.2838 bits (103), Expect = 1.050e-13
Identity = 17/34 (50.00%), Postives = 22/34 (64.71%), Query Frame = 3
Query:  516 PQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVE 617
            P   DWR+   VT VKNQ  CG CWAF+ + ++E
Sbjct:  114 PLEFDWRQFNKVTSVKNQGVCGACWAFATLGSLE 147          
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: CATS_CANFA (Cathepsin S OS=Canis familiaris GN=CTSS PE=2 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 1.771e-13
Identity = 25/37 (67.57%), Postives = 28/37 (75.68%), Query Frame = 3
Query:  507 EDLPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVE 617
            + LP SVDWR+KG VT VK Q  CG CWAFSAV A+E
Sbjct:  113 QKLPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALE 149          

HSP 2 Score: 36.965 bits (84), Expect = 1.771e-13
Identity = 23/82 (28.05%), Postives = 38/82 (46.34%), Query Frame = 1
Query:  142 GEFSIVGYSLEVLTSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQI-TSSYWLGLNEFSDMSHEE 384
            G   +  Y++  +     L   +  W   + K Y+   E++ R  I++ NLK +   N E  +   SY LG+N   DM+ EE
Sbjct:    6 GLLPLCSYAVAQVHKDPTLDHHWNLWKKTYSKQYKEENEEVARRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHLGDMTGEE 87          
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: CATV_NPVLD (Viral cathepsin OS=Lymantria dispar multicapsid nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 48.1358 bits (113), Expect = 2.295e-13
Identity = 18/34 (52.94%), Postives = 24/34 (70.59%), Query Frame = 3
Query:  516 PQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVE 617
            P   DWR++  VT +KNQ  CG CWAF+ +A+VE
Sbjct:  145 PLHFDWREQNKVTSIKNQGACGACWAFATLASVE 178          

HSP 2 Score: 47.3654 bits (111), Expect = 2.295e-13
Identity = 28/70 (40.00%), Postives = 40/70 (57.14%), Query Frame = 1
Query:  202 ELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGL 411
            + FES++  + K+Y S  EK  R  IFKDNL  I+A+N       +    +N+FSD+S  E   K+ TGL
Sbjct:   54 DYFESFVENYNKNYTSDWEKNKRYSIFKDNLHEINAKNGNATDGPTATYKINKFSDLSKSELIAKF-TGL 122          
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: CATV_NPVCD (Viral cathepsin OS=Choristoneura fumiferana defective polyhedrosis virus GN=Vcath PE=3 SV=1)

HSP 1 Score: 50.0618 bits (118), Expect = 2.302e-13
Identity = 31/73 (42.47%), Postives = 45/73 (61.64%), Query Frame = 1
Query:  193 KLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGL 411
            K    FE ++    K+Y S  EKLHR +IF+ NL+ I   N+ L  TS+ +  +N+FSD+S +E  +KY TGL
Sbjct:   23 KAPSYFEDFLHNFNKNYSSKSEKLHRFKIFQHNLEEI--INKNLNDTSAQY-EINKFSDLSKDETISKY-TGL 91          

HSP 2 Score: 45.4394 bits (106), Expect = 2.302e-13
Identity = 17/34 (50.00%), Postives = 22/34 (64.71%), Query Frame = 3
Query:  516 PQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVE 617
            P   DWR+   VT VKNQ  CG CWAF+ + ++E
Sbjct:  114 PLEFDWRRLNKVTSVKNQGTCGACWAFATLGSLE 147          
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: CATJ_MOUSE (Cathepsin J OS=Mus musculus GN=Ctsj PE=2 SV=2)

HSP 1 Score: 53.1434 bits (126), Expect = 2.987e-13
Identity = 21/36 (58.33%), Postives = 26/36 (72.22%), Query Frame = 3
Query:  513 LPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEG 620
            LP   DWR++G VT V+NQ  CG CWAF+A  A+EG
Sbjct:  114 LPDYKDWREEGYVTPVRNQGKCGSCWAFAAAGAIEG 149          

HSP 2 Score: 41.9726 bits (97), Expect = 2.987e-13
Identity = 21/67 (31.34%), Postives = 40/67 (59.70%), Query Frame = 1
Query:  193 KLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQI-TSSYWLGLNEFSDMSHEEFK 390
            KL   ++ W  K+ KSY   EE L R  ++++N++ I   N+E  +  +++ + +N+F D + EEF+
Sbjct:   24 KLDAEWKDWKTKYAKSYSPKEEALRR-AVWEENMRMIKLHNKENSLGKNNFTMKMNKFGDQTSEEFR 89          
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: CATL_SCHMA (Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 2.992e-13
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 3
Query:  498 QNVEDLPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVE 617
            + V ++P++ DWR+KGAVT VKNQ  CG CWAFS    VE
Sbjct:  100 KEVNNIPKNFDWREKGAVTEVKNQGMCGSCWAFSTTGNVE 139          

HSP 2 Score: 37.7354 bits (86), Expect = 2.992e-13
Identity = 21/68 (30.88%), Postives = 39/68 (57.35%), Query Frame = 1
Query:  202 ELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLT 405
            E +  + LK+ K Y  TE+++ R  IFK N+  + A+  ++ +  S   G+  +SD++ +EF   +LT
Sbjct:   18 EKYVQFKLKYRKQYHETEDEI-RFNIFKSNI--LKAQLYQVFVRGSAIYGVTPYSDLTTDEFARTHLT 82          
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: CPGP2_ZINOF (Zingipain-2 OS=Zingiber officinale PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.390e-13
Identity = 33/44 (75.00%), Postives = 36/44 (81.82%), Query Frame = 3
Query:  507 EDLPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEGINQIVT 638
            +DLP S+DWR+ GAV  VKNQ  CG CWAFS VAAVEGINQIVT
Sbjct:    1 DDLPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVT 44          
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: CYSP_TRYBB (Cysteine proteinase OS=Trypanosoma brucei brucei PE=1 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 3.846e-13
Identity = 23/39 (58.97%), Postives = 28/39 (71.79%), Query Frame = 3
Query:  516 PQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEGINQI 632
            P +VDWR+KGAVT VK Q  CG CWAFS +  +EG  Q+
Sbjct:  127 PAAVDWREKGAVTPVKVQGQCGSCWAFSTIGNIEGQWQV 165          

HSP 2 Score: 39.6614 bits (91), Expect = 3.846e-13
Identity = 23/87 (26.44%), Postives = 45/87 (51.72%), Query Frame = 1
Query:  154 IVGYSLEVLTSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYW--LGLNEFSDMSHEEFKNKYLTG 408
            +   +L  L   + L   F ++  K+GK Y+  +E+  R   F++N++       ++Q  ++ +   G+  FSDM+ EEF+ +Y  G
Sbjct:   23 LASVALGSLHVEESLEMRFAAFKKKYGKVYKDAKEEAFRFRAFEENMEQA-----KIQAAANPYATFGVTPFSDMTREEFRARYRNG 104          
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: CATV_NPVHC (Viral cathepsin OS=Hyphantria cunea nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 3.883e-13
Identity = 30/73 (41.10%), Postives = 43/73 (58.90%), Query Frame = 1
Query:  193 KLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGL 411
            K    FE ++ K  K Y S  EKL R +IF+ NL+ I  +N+    T+ Y   +N+FSD+S +E  +KY TGL
Sbjct:   23 KAPSYFEDFLHKFNKHYSSESEKLRRFQIFQHNLEEIIIKNQN-DTTAQY--EINKFSDLSKDETISKY-TGL 91          

HSP 2 Score: 46.2098 bits (108), Expect = 3.883e-13
Identity = 18/34 (52.94%), Postives = 23/34 (67.65%), Query Frame = 3
Query:  516 PQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVE 617
            P   DWR+   VT VKNQ  CG CWAF+ +A++E
Sbjct:  114 PLEFDWRRLNKVTSVKNQGICGACWAFATLASLE 147          
The following BLAST results are available for this feature:
BLAST of CF503965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
CFAD_DICDI1.036e-1341.86Counting factor associated protein D OS=Dictyostel... [more]
CATV_NPVOP1.050e-1343.84Viral cathepsin OS=Orgyia pseudotsugata multicapsi... [more]
CATS_CANFA1.771e-1367.57Cathepsin S OS=Canis familiaris GN=CTSS PE=2 SV=1[more]
CATV_NPVLD2.295e-1352.94Viral cathepsin OS=Lymantria dispar multicapsid nu... [more]
CATV_NPVCD2.302e-1342.47Viral cathepsin OS=Choristoneura fumiferana defect... [more]
CATJ_MOUSE2.987e-1358.33Cathepsin J OS=Mus musculus GN=Ctsj PE=2 SV=2[more]
CATL_SCHMA2.992e-1357.50Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=... [more]
CPGP2_ZINOF3.390e-1375.00Zingipain-2 OS=Zingiber officinale PE=1 SV=1[more]
CYSP_TRYBB3.846e-1358.97Cysteine proteinase OS=Trypanosoma brucei brucei P... [more]
CATV_NPVHC3.883e-1341.10Viral cathepsin OS=Hyphantria cunea nuclear polyhe... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-453 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503965 ID=CF503965; Name=CF503965; organism=Citrus sinensis; type=EST; length=639bp
GTGGGGGAGAGAGAGAGAGAGAGAGAGATGAAAATGTTATCTTCCAATTG
TAAGTTGTTGCTTCGTCTTTCTTTGTGCGTGTCTCTCTTGATGATCATAT
GCATACGCTGCTCTAGCAGTAGAACTCTTCAAGGTCATGATGGTGAGTTC
TCCATTGTGGGGTATTCACTAGAGGTGTTGACATCCACGGACAAGCTGGT
TGAGCTATTCGAGTCATGGATGTTGAAACATGGGAAATCGTATGAAAGCA
CGGAAGAGAAGTTGCATAGATTGGAGATATTCAAAGACAACTTGAAGCAC
ATTGATGCGAGGAACAGAGAGCTGCAAATTACTAGTAGCTATTGGCTTGG
TCTGAATGAGTTTTCAGATATGAGCCACGAAGAGTTCAAGAACAAGTACT
TAACAGGACTCAAACCCGATGATGATGAGTTCCGCAGAAGGAGTCACCGC
GACTCCAGTAGTAGATCTTCTGCTAGCAGTAGTAATCATTTTTTGTACAA
AATGTAGAGGATTTGCCTCAATCCGTTGACTGGAGGAAGAAAGGAGCTGT
CACTCATGTCAAAAACCAAAATCCTTGTGGTGGATGTTGGGCATTTTCAG
CAGTAGCAGCAGTGGAGGGGATAAATCAGATAGTGACGG
back to top