CF503968

Overview
NameCF503968
Unique NameCF503968
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig512 contig Csv1_Contig512:1..662. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB6_ARATH (Tubulin beta-6 chain OS=Arabidopsis thaliana GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 7.881e-77
Identity = 125/137 (91.24%), Postives = 134/137 (97.81%), Query Frame = 2 
Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREILHIQGGQCGNQIG+KFWEV+CDEHGID TG+Y G+SDLQLER+NVYYNEAS GRYVPRA+LMDLEPGTMDSVR+GP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCH
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCH 137

HSP 2 Score: 33.113 bits (74), Expect = 7.881e-77
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 1 
Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDRMMLTFS
Sbjct:  154 KIREEYPDRMMLTFS 168
[Close]
BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB9_ARATH (Tubulin beta-9 chain OS=Arabidopsis thaliana GN=TUBB9 PE=2 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 7.881e-77
Identity = 128/137 (93.43%), Postives = 133/137 (97.08%), Query Frame = 2 
Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREILHIQGGQCGNQIGAKFWEVIC EHGID TG+  GD+DLQLERINVY+NEASGG+YVPRAVLMDLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDLQLERINVYFNEASGGKYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 137

HSP 2 Score: 32.3426 bits (72), Expect = 7.881e-77
Identity = 13/15 (86.67%), Postives = 15/15 (100.00%), Query Frame = 1 
Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDRMM+TFS
Sbjct:  154 KIREEYPDRMMMTFS 168
[Close]
BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB2_ARATH (Tubulin beta-2/beta-3 chain OS=Arabidopsis thaliana GN=TUBB2 PE=1 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 1.028e-76
Identity = 127/137 (92.70%), Postives = 133/137 (97.08%), Query Frame = 2 
Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREILHIQGGQCGNQIGAKFWEV+C EHGID TG+Y+GDSDLQLERINVYYNEAS GR+VPRAVLMDLEPGTMDS+RSGP+GQ FRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 137

HSP 2 Score: 33.113 bits (74), Expect = 1.028e-76
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 1 
Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDRMMLTFS
Sbjct:  154 KIREEYPDRMMLTFS 168
[Close]
BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB8_ARATH (Tubulin beta-8 chain OS=Arabidopsis thaliana GN=TUBB8 PE=2 SV=2)

HSP 1 Score: 275.018 bits (702), Expect = 1.028e-76
Identity = 126/137 (91.97%), Postives = 133/137 (97.08%), Query Frame = 2 
Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREILHIQGGQCGNQIGAKFWEV+C EHGID TG+Y G++DLQLER+NVYYNEAS GR+VPRAVLMDLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 137

HSP 2 Score: 33.113 bits (74), Expect = 1.028e-76
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 1 
Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDRMMLTFS
Sbjct:  154 KIREEYPDRMMLTFS 168
[Close]
BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB1_LUPAL (Tubulin beta-1 chain OS=Lupinus albus GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 1.028e-76
Identity = 126/137 (91.97%), Postives = 133/137 (97.08%), Query Frame = 2 
Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREILHIQGGQCGNQIGAKFWEV+C EHGID TG+Y GD++LQLER+NVYYNEAS GR+VPRAVLMDLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYGGDNELQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 137

HSP 2 Score: 33.113 bits (74), Expect = 1.028e-76
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 1 
Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDRMMLTFS
Sbjct:  154 KIREEYPDRMMLTFS 168
[Close]
BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB6_GOSHI (Tubulin beta-6 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 1.341e-76
Identity = 127/139 (91.37%), Postives = 135/139 (97.12%), Query Frame = 2 
Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGD--SDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREILH+QGGQCGNQIG+KFWEVICDEHG+D TGKY+GD  SD+QLERI+VYYNEASGGRYVPRAVLMDLEPGTMDS+RSGP GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCH
Sbjct:    1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGKYNGDGSSDIQLERIDVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPIGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCH 139

HSP 2 Score: 32.3426 bits (72), Expect = 1.341e-76
Identity = 13/15 (86.67%), Postives = 15/15 (100.00%), Query Frame = 1 
Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDRMM+TFS
Sbjct:  156 KIREEYPDRMMMTFS 170
[Close]
BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB_CICAR (Tubulin beta chain OS=Cicer arietinum GN=TUBB PE=2 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 1.341e-76
Identity = 128/139 (92.09%), Postives = 133/139 (95.68%), Query Frame = 2 
Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKY--SGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREILH+QGGQCGNQIG+KFWEVICDEHGID TGKY   G SD QLERINVYYNEASGGRYVPRAVLMDLEPGTM+S+RSGPFG+IFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH
Sbjct:    1 MREILHVQGGQCGNQIGSKFWEVICDEHGIDQTGKYISEGGSDTQLERINVYYNEASGGRYVPRAVLMDLEPGTMESIRSGPFGKIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 139

HSP 2 Score: 33.113 bits (74), Expect = 1.341e-76
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 1 
Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDRMMLTFS
Sbjct:  156 KIREEYPDRMMLTFS 170
[Close]
BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB5_WHEAT (Tubulin beta-5 chain OS=Triticum aestivum GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 1.341e-76
Identity = 126/137 (91.97%), Postives = 133/137 (97.08%), Query Frame = 2 
Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREILHIQGGQCGNQIG+KFWEV+CDEHGID TG+Y G SDLQLER+NVYYNEAS GR+VPRAVLMDLEPGTMDSVR+GP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 137

HSP 2 Score: 33.113 bits (74), Expect = 1.341e-76
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 1 
Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDRMMLTFS
Sbjct:  154 KIREEYPDRMMLTFS 168
[Close]
BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB1_ORYSJ (Tubulin beta-1 chain OS=Oryza sativa subsp. japonica GN=TUBB1 PE=2 SV=2)

HSP 1 Score: 274.633 bits (701), Expect = 1.341e-76
Identity = 126/137 (91.97%), Postives = 133/137 (97.08%), Query Frame = 2 
Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREILHIQGGQCGNQIG+KFWEV+CDEHGID TG+Y G SDLQLER+NVYYNEAS GR+VPRAVLMDLEPGTMDSVR+GP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 137

HSP 2 Score: 33.113 bits (74), Expect = 1.341e-76
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 1 
Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDRMMLTFS
Sbjct:  154 KIREEYPDRMMLTFS 168
[Close]
BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB5_MAIZE (Tubulin beta-5 chain OS=Zea mays GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 1.341e-76
Identity = 126/137 (91.97%), Postives = 133/137 (97.08%), Query Frame = 2 
Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREILHIQGGQCGNQIG+KFWEV+CDEHGID TG+Y G SDLQLER+NVYYNEAS GR+VPRAVLMDLEPGTMDSVR+GP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 137

HSP 2 Score: 33.113 bits (74), Expect = 1.341e-76
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 1 
Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDRMMLTFS
Sbjct:  154 KIREEYPDRMMLTFS 168
The following BLAST results are available for this feature:
BLAST of CF503968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412
Match NameE-valueIdentityDescription
TBB6_ARATH7.881e-7791.24Tubulin beta-6 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB9_ARATH7.881e-7793.43Tubulin beta-9 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB2_ARATH1.028e-7692.70Tubulin beta-2/beta-3 chain OS=Arabidopsis thalian... [more]
TBB8_ARATH1.028e-7691.97Tubulin beta-8 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB1_LUPAL1.028e-7691.97Tubulin beta-1 chain OS=Lupinus albus GN=TUBB1 PE=... [more]
TBB6_GOSHI1.341e-7691.37Tubulin beta-6 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB_CICAR1.341e-7692.09Tubulin beta chain OS=Cicer arietinum GN=TUBB PE=2... [more]
TBB5_WHEAT1.341e-7691.97Tubulin beta-5 chain OS=Triticum aestivum GN=TUBB5... [more]
TBB1_ORYSJ1.341e-7691.97Tubulin beta-1 chain OS=Oryza sativa subsp. japoni... [more]
TBB5_MAIZE1.341e-7691.97Tubulin beta-5 chain OS=Zea mays GN=TUBB5 PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-456 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503968 ID=CF503968; Name=CF503968; organism=Citrus sinensis; type=EST; length=661bp
AAAGTCATTGTCAGTTCTATCACATCCAGTCCCTGAATGTTCATGCTTGA
AATATGATCCTACAGAATCGTATGTTAATGCTTCAAGTCCCCTACGTCTT
CCCAAACTTTCTCGCAAATTTTTCTCTCCCTTTCCCGCGAAACAAACAGA
ACAAAAAATGAGAGAAATCTTGCACATCCAGGGTGGGCAATGCGGCAACC
AGATCGGAGCCAAGTTCTGGGAGGTCATCTGCGACGAGCACGGAATTGAC
CACACGGGGAAGTACAGCGGAGACTCCGATCTCCAACTCGAACGCATCAA
TGTTTATTACAACGAGGCCAGCGGCGGAAGGTACGTCCCACGCGCCGTGT
TGATGGATCTGGAGCCTGGGACCATGGACTCTGTTAGATCCGGTCCGTTC
GGGCAGATATTTCGCCCCGATAACTTCGTGTTCGGGCAGTCTGGCGCTGG
CAATAACTGGGCCAAGGGTCATTACACCGAAGGCGCTGAGTTGATCGACT
CTGTTCTGGATGTTGTTAGAAAGGAAGCTGAGAATTGTGATTGCTTGCAG
GGATTTCAAGTATGTCATTCTTTGGGAGGAGGTACTGGTTCTGGTATGGG
AACCCTTCTTATTTCCAGATCAGGGAGGAGTATCCAGATCGCATGATGTT
GACATTTTCCG
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