CF503968

Overview
NameCF503968
Unique NameCF503968
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig512 contig Csv1_Contig512:1..662. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB4_ELEIN (Tubulin beta-4 chain OS=Eleusine indica GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 1.341e-76
Identity = 126/137 (91.97%), Postives = 133/137 (97.08%), Query Frame = 2 
Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREILHIQGGQCGNQIG+KFWEV+CDEHGID TG+Y G SDLQLER+NVYYNEAS GR+VPRAVLMDLEPGTMDSVR+GP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 137

HSP 2 Score: 33.113 bits (74), Expect = 1.341e-76
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 1 
Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDRMMLTFS
Sbjct:  154 KIREEYPDRMMLTFS 168
[Close]
BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB1_WHEAT (Tubulin beta-1 chain OS=Triticum aestivum GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 1.341e-76
Identity = 126/137 (91.97%), Postives = 133/137 (97.08%), Query Frame = 2 
Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREILHIQGGQCGNQIG+KFWEV+CDEHGID TG+Y G SDLQLER+NVYYNEAS GR+VPRAVLMDLEPGTMDSVR+GP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 137

HSP 2 Score: 33.113 bits (74), Expect = 1.341e-76
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 1 
Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDRMMLTFS
Sbjct:  154 KIREEYPDRMMLTFS 168
[Close]
BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB2_ORYSJ (Tubulin beta-2 chain OS=Oryza sativa subsp. japonica GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 1.748e-76
Identity = 126/137 (91.97%), Postives = 132/137 (96.35%), Query Frame = 2 
Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREILHIQGGQCGNQIGAKFWEV+C EHGID TG+Y GDSDLQLER+NVYYNEAS GR+VPRAVLMDLEPGTMDSVRSGP+G IFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCH
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDATGRYDGDSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGHIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCH 137

HSP 2 Score: 33.113 bits (74), Expect = 1.748e-76
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 1 
Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDRMMLTFS
Sbjct:  154 KIREEYPDRMMLTFS 168
[Close]
BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB9_GOSHI (Tubulin beta-9 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 1.749e-76
Identity = 128/137 (93.43%), Postives = 133/137 (97.08%), Query Frame = 2 
Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREILHIQGGQCGNQIGAKFWEV+C EHGID TG+Y GDS+LQLERINVYYNEAS GR+VPRAVLMDLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYGGDSELQLERINVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 137

HSP 2 Score: 30.8018 bits (68), Expect = 1.749e-76
Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = 1 
Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDR MLTFS
Sbjct:  154 KIREEYPDRTMLTFS 168
[Close]
BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB3_GOSHI (Tubulin beta-3 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 2.975e-76
Identity = 124/137 (90.51%), Postives = 133/137 (97.08%), Query Frame = 2 
Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREILH+QGGQCGNQIG+KFWEV+CDEHGID TG+Y G SDLQLER+NVYYNEAS GR+VPRAVLMDLEPGTMDSVR+GP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCH
Sbjct:    1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGSSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCH 137

HSP 2 Score: 33.113 bits (74), Expect = 2.975e-76
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 1 
Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDRMMLTFS
Sbjct:  154 KIREEYPDRMMLTFS 168
[Close]
BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB2_PEA (Tubulin beta-2 chain (Fragment) OS=Pisum sativum GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 3.879e-76
Identity = 126/135 (93.33%), Postives = 131/135 (97.04%), Query Frame = 2 
Query:  164 EILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            EI+HIQGGQCGNQIGAKFWEV+C EHGID TG+Y GD+DLQLERINVYYNEAS GRYVPRAVLMDLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH
Sbjct:    1 EIVHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYGGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 135

HSP 2 Score: 33.113 bits (74), Expect = 3.879e-76
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 1 
Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDRMMLTFS
Sbjct:  152 KIREEYPDRMMLTFS 166
[Close]
BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB_CHLRE (Tubulin beta-1/beta-2 chain OS=Chlamydomonas reinhardtii GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 3.880e-76
Identity = 125/137 (91.24%), Postives = 133/137 (97.08%), Query Frame = 2 
Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREI+HIQGGQCGNQIGAKFWEV+ DEHGID TG Y GDSDLQLERINVY+NEA+GGRYVPRA+LMDLEPGTMDSVRSGP+GQIFRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE+CDCLQGFQVCH
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVVSDEHGIDPTGTYHGDSDLQLERINVYFNEATGGRYVPRAILMDLEPGTMDSVRSGPYGQIFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQVCH 137

HSP 2 Score: 33.113 bits (74), Expect = 3.880e-76
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 1 
Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDRMMLTFS
Sbjct:  154 KIREEYPDRMMLTFS 168
[Close]
BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB1_VOLCA (Tubulin beta chain OS=Volvox carteri GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 3.880e-76
Identity = 125/137 (91.24%), Postives = 133/137 (97.08%), Query Frame = 2 
Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREI+HIQGGQCGNQIGAKFWEV+ DEHGID TG Y GDSDLQLERINVY+NEA+GGRYVPRA+LMDLEPGTMDSVRSGP+GQIFRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE+CDCLQGFQVCH
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVVSDEHGIDPTGTYHGDSDLQLERINVYFNEATGGRYVPRAILMDLEPGTMDSVRSGPYGQIFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQVCH 137

HSP 2 Score: 33.113 bits (74), Expect = 3.880e-76
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 1 
Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDRMMLTFS
Sbjct:  154 KIREEYPDRMMLTFS 168
[Close]
BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB_CHLIN (Tubulin beta chain OS=Chlamydomonas incerta GN=TUBB PE=3 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 5.060e-76
Identity = 124/137 (90.51%), Postives = 133/137 (97.08%), Query Frame = 2 
Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREI+HIQGGQCGNQIGAKFWEV+ DEHG+D TG Y GDSDLQLERINVY+NEA+GGRYVPRA+LMDLEPGTMDSVRSGP+GQIFRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE+CDCLQGFQVCH
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVVSDEHGVDPTGTYHGDSDLQLERINVYFNEATGGRYVPRAILMDLEPGTMDSVRSGPYGQIFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQVCH 137

HSP 2 Score: 33.113 bits (74), Expect = 5.060e-76
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 1 
Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDRMMLTFS
Sbjct:  154 KIREEYPDRMMLTFS 168
[Close]
BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB2_SOLTU (Tubulin beta-2 chain OS=Solanum tuberosum GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 8.606e-76
Identity = 126/140 (90.00%), Postives = 134/140 (95.71%), Query Frame = 2 
Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSG---DSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREILHIQGGQCGNQIG+KFWEVICDEHG+D TG+Y G   +SDLQLERINVY+NEASGGRYVPRAVLMDLEPGTMDS+RSGP+GQIFRPDN VFGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCH
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGRYKGTAAESDLQLERINVYFNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNLVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCH 140

HSP 2 Score: 32.7278 bits (73), Expect = 8.606e-76
Identity = 13/15 (86.67%), Postives = 15/15 (100.00%), Query Frame = 1 
Query:  616 QIREEYPDRMMLTFS 660
            ++REEYPDRMMLTFS
Sbjct:  157 KVREEYPDRMMLTFS 171
The following BLAST results are available for this feature:
BLAST of CF503968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412
Match NameE-valueIdentityDescription
TBB4_ELEIN1.341e-7691.97Tubulin beta-4 chain OS=Eleusine indica GN=TUBB4 P... [more]
TBB1_WHEAT1.341e-7691.97Tubulin beta-1 chain OS=Triticum aestivum GN=TUBB1... [more]
TBB2_ORYSJ1.748e-7691.97Tubulin beta-2 chain OS=Oryza sativa subsp. japoni... [more]
TBB9_GOSHI1.749e-7693.43Tubulin beta-9 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB3_GOSHI2.975e-7690.51Tubulin beta-3 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB2_PEA3.879e-7693.33Tubulin beta-2 chain (Fragment) OS=Pisum sativum G... [more]
TBB_CHLRE3.880e-7691.24Tubulin beta-1/beta-2 chain OS=Chlamydomonas reinh... [more]
TBB1_VOLCA3.880e-7691.24Tubulin beta chain OS=Volvox carteri GN=TUBB1 PE=3... [more]
TBB_CHLIN5.060e-7690.51Tubulin beta chain OS=Chlamydomonas incerta GN=TUB... [more]
TBB2_SOLTU8.606e-7690.00Tubulin beta-2 chain OS=Solanum tuberosum GN=TUBB2... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-456 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503968 ID=CF503968; Name=CF503968; organism=Citrus sinensis; type=EST; length=661bp
AAAGTCATTGTCAGTTCTATCACATCCAGTCCCTGAATGTTCATGCTTGA
AATATGATCCTACAGAATCGTATGTTAATGCTTCAAGTCCCCTACGTCTT
CCCAAACTTTCTCGCAAATTTTTCTCTCCCTTTCCCGCGAAACAAACAGA
ACAAAAAATGAGAGAAATCTTGCACATCCAGGGTGGGCAATGCGGCAACC
AGATCGGAGCCAAGTTCTGGGAGGTCATCTGCGACGAGCACGGAATTGAC
CACACGGGGAAGTACAGCGGAGACTCCGATCTCCAACTCGAACGCATCAA
TGTTTATTACAACGAGGCCAGCGGCGGAAGGTACGTCCCACGCGCCGTGT
TGATGGATCTGGAGCCTGGGACCATGGACTCTGTTAGATCCGGTCCGTTC
GGGCAGATATTTCGCCCCGATAACTTCGTGTTCGGGCAGTCTGGCGCTGG
CAATAACTGGGCCAAGGGTCATTACACCGAAGGCGCTGAGTTGATCGACT
CTGTTCTGGATGTTGTTAGAAAGGAAGCTGAGAATTGTGATTGCTTGCAG
GGATTTCAAGTATGTCATTCTTTGGGAGGAGGTACTGGTTCTGGTATGGG
AACCCTTCTTATTTCCAGATCAGGGAGGAGTATCCAGATCGCATGATGTT
GACATTTTCCG
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