CF503968 | Citrus Genome Database

Overview


Name	CF503968
Unique Name	CF503968
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	661

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB1_SOLTU (Tubulin beta-1 chain OS=Solanum tuberosum GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 8.606e-76
Identity = 126/140 (90.00%), Postives = 134/140 (95.71%), Query Frame = 2

Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSG---DSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREILHIQGGQCGNQIG+KFWEVICDEHG+D TG+Y G   +SDLQLERINVY+NEASGGRYVPRAVLMDLEPGTMDS+RSGP+GQIFRPDN VFGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCH
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGRYKGTAAESDLQLERINVYFNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNLVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCH 140

HSP 2 Score: 32.7278 bits (73), Expect = 8.606e-76
Identity = 13/15 (86.67%), Postives = 15/15 (100.00%), Query Frame = 1

Query:  616 QIREEYPDRMMLTFS 660
            ++REEYPDRMMLTFS
Sbjct:  157 KVREEYPDRMMLTFS 171

[Close]

BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB2_MAIZE (Tubulin beta-2 chain OS=Zea mays GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 8.607e-76
Identity = 124/137 (90.51%), Postives = 133/137 (97.08%), Query Frame = 2

Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREILHIQGGQCGNQIG+KFWEV+CDEHGID TG+Y G SD+QLER+NVYYNEAS GR+VPRAVLMDLEPGTMD+VR+GP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYMGTSDVQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDAVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 137

HSP 2 Score: 32.3426 bits (72), Expect = 8.607e-76
Identity = 13/15 (86.67%), Postives = 15/15 (100.00%), Query Frame = 1

Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDRMM+TFS
Sbjct:  154 KIREEYPDRMMMTFS 168

[Close]

BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB8_MAIZE (Tubulin beta-8 chain OS=Zea mays GN=TUBB8 PE=2 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 8.607e-76
Identity = 125/137 (91.24%), Postives = 132/137 (96.35%), Query Frame = 2

Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREILHIQGGQCGNQIG+KFWEV+CDEHGID TG+Y G SDLQLER+NVYYNEAS GR+VP AVLMDLEPGTMDSVR+GP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQLERVNVYYNEASCGRFVPGAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 137

HSP 2 Score: 33.113 bits (74), Expect = 8.607e-76
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 1

Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDRMMLTFS
Sbjct:  154 KIREEYPDRMMLTFS 168

[Close]

BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB2_SOYBN (Tubulin beta-2 chain OS=Glycine max GN=TUBB2 PE=3 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 2.490e-75
Identity = 126/137 (91.97%), Postives = 131/137 (95.62%), Query Frame = 2

Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MRE LHIQGGQCGNQIGAKFWEV+C EHGID TG+Y GDS+LQLERINVYYNEAS GR+V RAVLMDLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH
Sbjct:    1 MRESLHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYGGDSELQLERINVYYNEASCGRFVRRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 137

HSP 2 Score: 33.113 bits (74), Expect = 2.490e-75
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 1

Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDRMMLTFS
Sbjct:  154 KIREEYPDRMMLTFS 168

[Close]

BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB7_ARATH (Tubulin beta-7 chain OS=Arabidopsis thaliana GN=TUBB7 PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 3.248e-75
Identity = 126/137 (91.97%), Postives = 132/137 (96.35%), Query Frame = 2

Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREILHIQGGQCGNQIG+KFWEV+  EHGID TG+Y GDS+LQLER+NVYYNEAS GRYVPRAVLMDLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSELQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 137

HSP 2 Score: 32.3426 bits (72), Expect = 3.248e-75
Identity = 13/15 (86.67%), Postives = 15/15 (100.00%), Query Frame = 1

Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDRMM+TFS
Sbjct:  154 KIREEYPDRMMMTFS 168

[Close]

BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB1_MAIZE (Tubulin beta-1 chain OS=Zea mays GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 3.248e-75
Identity = 126/137 (91.97%), Postives = 131/137 (95.62%), Query Frame = 2

Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREILHIQGGQCGNQIGAKFWEV+C EHGID TG+Y GDSDLQLER+NVYYNEAS GR+VPRAVLMDLEPGTMDSVRSGP+G IFRPDNFVFGQSGAGNN AKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDATGRYGGDSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGHIFRPDNFVFGQSGAGNNSAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 137

HSP 2 Score: 33.113 bits (74), Expect = 3.248e-75
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 1

Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDRMMLTFS
Sbjct:  154 KIREEYPDRMMLTFS 168

[Close]

BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB2_DAUCA (Tubulin beta-2 chain OS=Daucus carota GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 4.236e-75
Identity = 123/137 (89.78%), Postives = 132/137 (96.35%), Query Frame = 2

Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREILHIQGGQCGNQIG+KFWEV+CDEHGID TG+   +SDLQL+RINVYYNEASGGRYVPRAVLMDLEPGTMDSV++GP GQIFRPDNF+FGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENC+CLQGFQVCH
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGQVLSESDLQLDRINVYYNEASGGRYVPRAVLMDLEPGTMDSVKTGPHGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCECLQGFQVCH 137

HSP 2 Score: 33.113 bits (74), Expect = 4.236e-75
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 1

Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDRMMLTFS
Sbjct:  154 KIREEYPDRMMLTFS 168

[Close]

BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB2_LUPAL (Tubulin beta-2 chain OS=Lupinus albus GN=TUBB2 PE=3 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 7.205e-75
Identity = 124/137 (90.51%), Postives = 131/137 (95.62%), Query Frame = 2

Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREILHIQGGQCGNQIGAKFWEV+C EHGID TG+Y GD+ LQLER+NVYYNEAS GR+VPRAVLMDLEPGTMDS+RSG +GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYEGDNVLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSLRSGTYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 137

HSP 2 Score: 33.113 bits (74), Expect = 7.205e-75
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 1

Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDRMMLTFS
Sbjct:  154 KIREEYPDRMMLTFS 168

[Close]

BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB1_SOYBN (Tubulin beta-1 chain OS=Glycine max GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 7.206e-75
Identity = 122/137 (89.05%), Postives = 130/137 (94.89%), Query Frame = 2

Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREILH+Q GQCGNQIG KFWEV+CDEHGID TG Y G+  LQLER+NVYYNEASGGRYVPRAVLMDLEPGTMDS+RSGPFG+IFRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQ+CH
Sbjct:    1 MREILHVQAGQCGNQIGGKFWEVMCDEHGIDATGNYVGNFHLQLERVNVYYNEASGGRYVPRAVLMDLEPGTMDSLRSGPFGKIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICH 137

HSP 2 Score: 33.113 bits (74), Expect = 7.206e-75
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 1

Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDRMMLTFS
Sbjct:  154 KIREEYPDRMMLTFS 168

[Close]

BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB3_MAIZE (Tubulin beta-3 chain OS=Zea mays GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 2.085e-74
Identity = 124/137 (90.51%), Postives = 129/137 (94.16%), Query Frame = 2

Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREILHIQGGQCGNQIGAKFWEVIC EHG+D TG YSG S  QLERINVYYNEA GGRYVPRAVLMDLEPGTM+S+R+GPFG IFRPDNFV+GQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICGEHGVDSTGCYSGVSPQQLERINVYYNEAGGGRYVPRAVLMDLEPGTMESIRAGPFGGIFRPDNFVYGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 137

HSP 2 Score: 33.113 bits (74), Expect = 2.085e-74
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 1

Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDRMMLTFS
Sbjct:  154 KIREEYPDRMMLTFS 168

The following BLAST results are available for this feature:

BLAST of CF503968 vs. ExPASy Swiss-Prot

BLAST of CF503968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412


Match Name	E-value	Identity	Description
TBB1_SOLTU	8.606e-76	90.00	Tubulin beta-1 chain OS=Solanum tuberosum GN=TUBB1...	[more]
TBB2_MAIZE	8.607e-76	90.51	Tubulin beta-2 chain OS=Zea mays GN=TUBB2 PE=2 SV=...	[more]
TBB8_MAIZE	8.607e-76	91.24	Tubulin beta-8 chain OS=Zea mays GN=TUBB8 PE=2 SV=...	[more]
TBB2_SOYBN	2.490e-75	91.97	Tubulin beta-2 chain OS=Glycine max GN=TUBB2 PE=3 ...	[more]
TBB7_ARATH	3.248e-75	91.97	Tubulin beta-7 chain OS=Arabidopsis thaliana GN=TU...	[more]
TBB1_MAIZE	3.248e-75	91.97	Tubulin beta-1 chain OS=Zea mays GN=TUBB1 PE=2 SV=...	[more]
TBB2_DAUCA	4.236e-75	89.78	Tubulin beta-2 chain OS=Daucus carota GN=TUBB2 PE=...	[more]
TBB2_LUPAL	7.205e-75	90.51	Tubulin beta-2 chain OS=Lupinus albus GN=TUBB2 PE=...	[more]
TBB1_SOYBN	7.206e-75	89.05	Tubulin beta-1 chain OS=Glycine max GN=TUBB1 PE=3 ...	[more]
TBB3_MAIZE	2.085e-74	90.51	Tubulin beta-3 chain OS=Zea mays GN=TUBB3 PE=2 SV=...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_119000-456 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_G11 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF503968 ID=CF503968; Name=CF503968; organism=Citrus sinensis; type=EST; length=661bp
AAAGTCATTGTCAGTTCTATCACATCCAGTCCCTGAATGTTCATGCTTGA
AATATGATCCTACAGAATCGTATGTTAATGCTTCAAGTCCCCTACGTCTT
CCCAAACTTTCTCGCAAATTTTTCTCTCCCTTTCCCGCGAAACAAACAGA
ACAAAAAATGAGAGAAATCTTGCACATCCAGGGTGGGCAATGCGGCAACC
AGATCGGAGCCAAGTTCTGGGAGGTCATCTGCGACGAGCACGGAATTGAC
CACACGGGGAAGTACAGCGGAGACTCCGATCTCCAACTCGAACGCATCAA
TGTTTATTACAACGAGGCCAGCGGCGGAAGGTACGTCCCACGCGCCGTGT
TGATGGATCTGGAGCCTGGGACCATGGACTCTGTTAGATCCGGTCCGTTC
GGGCAGATATTTCGCCCCGATAACTTCGTGTTCGGGCAGTCTGGCGCTGG
CAATAACTGGGCCAAGGGTCATTACACCGAAGGCGCTGAGTTGATCGACT
CTGTTCTGGATGTTGTTAGAAAGGAAGCTGAGAATTGTGATTGCTTGCAG
GGATTTCAAGTATGTCATTCTTTGGGAGGAGGTACTGGTTCTGGTATGGG
AACCCTTCTTATTTCCAGATCAGGGAGGAGTATCCAGATCGCATGATGTT
GACATTTTCCG