CF503968

Overview
NameCF503968
Unique NameCF503968
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB_STYLE (Tubulin beta chain OS=Stylonychia lemnae GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 2.085e-74
Identity = 126/137 (91.97%), Postives = 131/137 (95.62%), Query Frame = 2 
Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREI+HIQGGQCGNQIGAKFWEVI DEHGID TG Y GDSDLQLERINVYYNEA+GGRYVPRAVLMDLEPGTMDSVR+GPFGQ+FRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAE CDCLQGFQ+ H
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITH 137

HSP 2 Score: 29.261 bits (64), Expect = 2.085e-74
Identity = 11/15 (73.33%), Postives = 14/15 (93.33%), Query Frame = 1 
Query:  616 QIREEYPDRMMLTFS 660
            ++REEYPDR+M TFS
Sbjct:  154 KVREEYPDRIMATFS 168
[Close]
BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB_POLAG (Tubulin beta chain OS=Polytomella agilis GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 2.719e-74
Identity = 123/137 (89.78%), Postives = 131/137 (95.62%), Query Frame = 2 
Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREI+HIQGGQCGNQIGAKFWEV+ DEHGID TG   GDSDLQLERINVY+NEA+G RYVPRA+LMDLEPGTMDSVRSGP+GQIFRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE+CDCLQGFQVCH
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVVSDEHGIDPTGTALGDSDLQLERINVYFNEATGSRYVPRAILMDLEPGTMDSVRSGPYGQIFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQVCH 137

HSP 2 Score: 33.113 bits (74), Expect = 2.719e-74
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 1 
Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDRMMLTFS
Sbjct:  154 KIREEYPDRMMLTFS 168
[Close]
BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB_NAEGR (Tubulin beta chain OS=Naegleria gruberi PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 3.546e-74
Identity = 122/137 (89.05%), Postives = 131/137 (95.62%), Query Frame = 2 
Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREI+HIQ GQCGNQIGAKFWEVI DEHG+D TG Y GDSDLQLERINVYYNEA+GGRYVPRA+LMDLEPGTMDSVR+GP+GQIFRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE+CDCLQGFQ+ H
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGVDPTGAYHGDSDLQLERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPYGQIFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQIAH 137

HSP 2 Score: 32.3426 bits (72), Expect = 3.546e-74
Identity = 13/15 (86.67%), Postives = 15/15 (100.00%), Query Frame = 1 
Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDRMM+TFS
Sbjct:  154 KIREEYPDRMMMTFS 168
[Close]
BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB8_ORYSJ (Tubulin beta-8 chain OS=Oryza sativa subsp. japonica GN=TUBB8 PE=2 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 4.625e-74
Identity = 124/137 (90.51%), Postives = 129/137 (94.16%), Query Frame = 2 
Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREILHIQGGQCGNQIGAKFWEVIC EHG+D TG Y+G S  QLERINVY+NEASGGR+VPRAVLMDLEPGTMDS+RSGP G IFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICGEHGVDPTGTYTGTSPQQLERINVYFNEASGGRHVPRAVLMDLEPGTMDSLRSGPIGGIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 137

HSP 2 Score: 33.113 bits (74), Expect = 4.625e-74
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 1 
Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDRMMLTFS
Sbjct:  154 KIREEYPDRMMLTFS 168
[Close]
BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB4_OOMCK (Tubulin beta-4 chain OS=Oomycete-like sp. (strain MacKay2000) GN=TUBB4 PE=3 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 7.866e-74
Identity = 123/137 (89.78%), Postives = 132/137 (96.35%), Query Frame = 2 
Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREI+HIQGGQCG+QIGAKFWEVI DEHGID TG Y+GDSDLQLER+NVYYNEA+GGRYVPRAVLMDLEPGTMDSVR+GP+GQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE CDCLQGFQV H
Sbjct:    1 MREIVHIQGGQCGDQIGAKFWEVISDEHGIDPTGTYNGDSDLQLERVNVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGPYGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEQCDCLQGFQVTH 137

HSP 2 Score: 30.8018 bits (68), Expect = 7.866e-74
Identity = 12/15 (80.00%), Postives = 15/15 (100.00%), Query Frame = 1 
Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDR+M+TFS
Sbjct:  154 KIREEYPDRVMMTFS 168
[Close]
BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB1_CYAPA (Tubulin beta-1 chain OS=Cyanophora paradoxa GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 7.867e-74
Identity = 122/137 (89.05%), Postives = 131/137 (95.62%), Query Frame = 2 
Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREI+H+QGGQCGNQIGAKFWEVI DEHG+D TG Y GDSDLQLERINVYYNEA+GGRYVPRAVLMDLEPGTMDSVR+GP+GQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAE CDCLQGFQ+ H
Sbjct:    1 MREIVHVQGGQCGNQIGAKFWEVISDEHGVDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGPYGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITH 137

HSP 2 Score: 29.6462 bits (65), Expect = 7.867e-74
Identity = 11/15 (73.33%), Postives = 14/15 (93.33%), Query Frame = 1 
Query:  616 QIREEYPDRMMLTFS 660
            ++REEYPDRMM T+S
Sbjct:  154 KVREEYPDRMMCTYS 168
[Close]
BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB_EUPCR (Tubulin beta chain OS=Euplotes crassus PE=3 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.026e-73
Identity = 123/137 (89.78%), Postives = 131/137 (95.62%), Query Frame = 2 
Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREI+H+QGGQCGNQIGAKFWEVI DEHG+D TG Y GDSDLQLERINVYYNEA+GGRYVPRAVLMDLEPGTMDSVR+GPFGQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE CDCLQGFQ+ H
Sbjct:    1 MREIVHVQGGQCGNQIGAKFWEVISDEHGVDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITH 137

HSP 2 Score: 28.8758 bits (63), Expect = 1.026e-73
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = 1 
Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDR+M TFS
Sbjct:  154 KIREEYPDRIMETFS 168
[Close]
BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB_TETTH (Tubulin beta chain OS=Tetrahymena thermophila GN=BTU1 PE=1 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.026e-73
Identity = 124/137 (90.51%), Postives = 131/137 (95.62%), Query Frame = 2 
Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREI+HIQGGQCGNQIGAKFWEVI DEHGID TG Y GDSDLQLERINVYYNEA+GGRYVPRA+LMDLEPGTMDSVR+GPFGQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE CDCLQGFQ+ H
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITH 137

HSP 2 Score: 28.4906 bits (62), Expect = 1.026e-73
Identity = 11/15 (73.33%), Postives = 14/15 (93.33%), Query Frame = 1 
Query:  616 QIREEYPDRMMLTFS 660
            ++REEYPDR+M TFS
Sbjct:  154 KVREEYPDRIMETFS 168
[Close]
BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB_TETPY (Tubulin beta chain OS=Tetrahymena pyriformis GN=BETA-TT1 PE=3 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.026e-73
Identity = 124/137 (90.51%), Postives = 131/137 (95.62%), Query Frame = 2 
Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREI+HIQGGQCGNQIGAKFWEVI DEHGID TG Y GDSDLQLERINVYYNEA+GGRYVPRA+LMDLEPGTMDSVR+GPFGQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE CDCLQGFQ+ H
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITH 137

HSP 2 Score: 28.4906 bits (62), Expect = 1.026e-73
Identity = 11/15 (73.33%), Postives = 14/15 (93.33%), Query Frame = 1 
Query:  616 QIREEYPDRMMLTFS 660
            ++REEYPDR+M TFS
Sbjct:  154 KVREEYPDRIMETFS 168
[Close]
BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB1_PARTE (Tubulin beta chain OS=Paramecium tetraurelia GN=bPT2 PE=3 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.026e-73
Identity = 124/137 (90.51%), Postives = 131/137 (95.62%), Query Frame = 2 
Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREI+HIQGGQCGNQIGAKFWEVI DEHGID TG Y GDSDLQLERINVYYNEA+GGRYVPRA+LMDLEPGTMDSVR+GPFGQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE CDCLQGFQ+ H
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITH 137

HSP 2 Score: 28.4906 bits (62), Expect = 1.026e-73
Identity = 11/15 (73.33%), Postives = 14/15 (93.33%), Query Frame = 1 
Query:  616 QIREEYPDRMMLTFS 660
            ++REEYPDR+M TFS
Sbjct:  154 KVREEYPDRIMETFS 168
The following BLAST results are available for this feature:
BLAST of CF503968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412
Match NameE-valueIdentityDescription
TBB_STYLE2.085e-7491.97Tubulin beta chain OS=Stylonychia lemnae GN=TUBB1 ... [more]
TBB_POLAG2.719e-7489.78Tubulin beta chain OS=Polytomella agilis GN=TUBB1 ... [more]
TBB_NAEGR3.546e-7489.05Tubulin beta chain OS=Naegleria gruberi PE=2 SV=1[more]
TBB8_ORYSJ4.625e-7490.51Tubulin beta-8 chain OS=Oryza sativa subsp. japoni... [more]
TBB4_OOMCK7.866e-7489.78Tubulin beta-4 chain OS=Oomycete-like sp. (strain ... [more]
TBB1_CYAPA7.867e-7489.05Tubulin beta-1 chain OS=Cyanophora paradoxa GN=TUB... [more]
TBB_EUPCR1.026e-7389.78Tubulin beta chain OS=Euplotes crassus PE=3 SV=1[more]
TBB_TETTH1.026e-7390.51Tubulin beta chain OS=Tetrahymena thermophila GN=B... [more]
TBB_TETPY1.026e-7390.51Tubulin beta chain OS=Tetrahymena pyriformis GN=BE... [more]
TBB1_PARTE1.026e-7390.51Tubulin beta chain OS=Paramecium tetraurelia GN=bP... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-456 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503968 ID=CF503968; Name=CF503968; organism=Citrus sinensis; type=EST; length=661bp
AAAGTCATTGTCAGTTCTATCACATCCAGTCCCTGAATGTTCATGCTTGA
AATATGATCCTACAGAATCGTATGTTAATGCTTCAAGTCCCCTACGTCTT
CCCAAACTTTCTCGCAAATTTTTCTCTCCCTTTCCCGCGAAACAAACAGA
ACAAAAAATGAGAGAAATCTTGCACATCCAGGGTGGGCAATGCGGCAACC
AGATCGGAGCCAAGTTCTGGGAGGTCATCTGCGACGAGCACGGAATTGAC
CACACGGGGAAGTACAGCGGAGACTCCGATCTCCAACTCGAACGCATCAA
TGTTTATTACAACGAGGCCAGCGGCGGAAGGTACGTCCCACGCGCCGTGT
TGATGGATCTGGAGCCTGGGACCATGGACTCTGTTAGATCCGGTCCGTTC
GGGCAGATATTTCGCCCCGATAACTTCGTGTTCGGGCAGTCTGGCGCTGG
CAATAACTGGGCCAAGGGTCATTACACCGAAGGCGCTGAGTTGATCGACT
CTGTTCTGGATGTTGTTAGAAAGGAAGCTGAGAATTGTGATTGCTTGCAG
GGATTTCAAGTATGTCATTCTTTGGGAGGAGGTACTGGTTCTGGTATGGG
AACCCTTCTTATTTCCAGATCAGGGAGGAGTATCCAGATCGCATGATGTT
GACATTTTCCG
back to top