CF503968 | Citrus Genome Database

Overview


Name	CF503968
Unique Name	CF503968
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	661

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig512	contig	Csv1_Contig512:1..662.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB5_HUMAN (Tubulin beta chain OS=Homo sapiens GN=TUBB PE=1 SV=2)

HSP 1 Score: 263.848 bits (673), Expect = 4.225e-72
Identity = 121/137 (88.32%), Postives = 131/137 (95.62%), Query Frame = 2

Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREI+HIQ GQCGNQIGAKFWEVI DEHGID TG Y GDSDLQL+RI+VYYNEA+GG+YVPRA+L+DLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKEAE+CDCLQGFQ+ H
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTH 137

HSP 2 Score: 28.8758 bits (63), Expect = 4.225e-72
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = 1

Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDR+M TFS
Sbjct:  154 KIREEYPDRIMNTFS 168

BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB5_CRIGR (Tubulin beta-5 chain OS=Cricetulus griseus GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 4.225e-72
Identity = 121/137 (88.32%), Postives = 131/137 (95.62%), Query Frame = 2

Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREI+HIQ GQCGNQIGAKFWEVI DEHGID TG Y GDSDLQL+RI+VYYNEA+GG+YVPRA+L+DLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKEAE+CDCLQGFQ+ H
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTH 137

HSP 2 Score: 28.8758 bits (63), Expect = 4.225e-72
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = 1

Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDR+M TFS
Sbjct:  154 KIREEYPDRIMNTFS 168

BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB5_BOVIN (Tubulin beta-5 chain OS=Bos taurus GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 4.225e-72
Identity = 121/137 (88.32%), Postives = 131/137 (95.62%), Query Frame = 2

Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREI+HIQ GQCGNQIGAKFWEVI DEHGID TG Y GDSDLQL+RI+VYYNEA+GG+YVPRA+L+DLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKEAE+CDCLQGFQ+ H
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTH 137

HSP 2 Score: 28.8758 bits (63), Expect = 4.225e-72
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = 1

Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDR+M TFS
Sbjct:  154 KIREEYPDRIMNTFS 168

BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB2_CHICK (Tubulin beta-2 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 4.225e-72
Identity = 121/137 (88.32%), Postives = 130/137 (94.89%), Query Frame = 2

Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREI+HIQ GQCGNQIGAKFWEVI DEHGID TG Y GDSDLQLERINVYYNEA+G +YVPRA+L+DLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKE+E+CDCLQGFQ+ H
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTH 137

HSP 2 Score: 28.8758 bits (63), Expect = 4.225e-72
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = 1

Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDR+M TFS
Sbjct:  154 KIREEYPDRIMNTFS 168

BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB2B_RAT (Tubulin beta-2B chain OS=Rattus norvegicus GN=Tubb2b PE=1 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 4.225e-72
Identity = 121/137 (88.32%), Postives = 130/137 (94.89%), Query Frame = 2

Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREI+HIQ GQCGNQIGAKFWEVI DEHGID TG Y GDSDLQLERINVYYNEA+G +YVPRA+L+DLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKE+E+CDCLQGFQ+ H
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTH 137

HSP 2 Score: 28.8758 bits (63), Expect = 4.225e-72
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = 1

Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDR+M TFS
Sbjct:  154 KIREEYPDRIMNTFS 168

BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB2B_MOUSE (Tubulin beta-2B chain OS=Mus musculus GN=Tubb2b PE=1 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 4.225e-72
Identity = 121/137 (88.32%), Postives = 130/137 (94.89%), Query Frame = 2

Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREI+HIQ GQCGNQIGAKFWEVI DEHGID TG Y GDSDLQLERINVYYNEA+G +YVPRA+L+DLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKE+E+CDCLQGFQ+ H
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTH 137

HSP 2 Score: 28.8758 bits (63), Expect = 4.225e-72
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = 1

Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDR+M TFS
Sbjct:  154 KIREEYPDRIMNTFS 168

BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB2B_HUMAN (Tubulin beta-2B chain OS=Homo sapiens GN=TUBB2B PE=1 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 4.225e-72
Identity = 121/137 (88.32%), Postives = 130/137 (94.89%), Query Frame = 2

Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREI+HIQ GQCGNQIGAKFWEVI DEHGID TG Y GDSDLQLERINVYYNEA+G +YVPRA+L+DLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKE+E+CDCLQGFQ+ H
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTH 137

HSP 2 Score: 28.8758 bits (63), Expect = 4.225e-72
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = 1

Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDR+M TFS
Sbjct:  154 KIREEYPDRIMNTFS 168

BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB2B_BOVIN (Tubulin beta-2B chain OS=Bos taurus GN=TUBB2B PE=1 SV=2)

HSP 1 Score: 263.848 bits (673), Expect = 4.225e-72
Identity = 121/137 (88.32%), Postives = 130/137 (94.89%), Query Frame = 2

Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREI+HIQ GQCGNQIGAKFWEVI DEHGID TG Y GDSDLQLERINVYYNEA+G +YVPRA+L+DLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKE+E+CDCLQGFQ+ H
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTH 137

HSP 2 Score: 28.8758 bits (63), Expect = 4.225e-72
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = 1

Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDR+M TFS
Sbjct:  154 KIREEYPDRIMNTFS 168

BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB2A_RAT (Tubulin beta-2A chain OS=Rattus norvegicus GN=Tubb2a PE=1 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 4.225e-72
Identity = 121/137 (88.32%), Postives = 130/137 (94.89%), Query Frame = 2

Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREI+HIQ GQCGNQIGAKFWEVI DEHGID TG Y GDSDLQLERINVYYNEA+G +YVPRA+L+DLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKE+E+CDCLQGFQ+ H
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTH 137

HSP 2 Score: 28.8758 bits (63), Expect = 4.225e-72
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = 1

Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDR+M TFS
Sbjct:  154 KIREEYPDRIMNTFS 168

BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB2A_MOUSE (Tubulin beta-2A chain OS=Mus musculus GN=Tubb2a PE=1 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 4.225e-72
Identity = 121/137 (88.32%), Postives = 130/137 (94.89%), Query Frame = 2

Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREI+HIQ GQCGNQIGAKFWEVI DEHGID TG Y GDSDLQLERINVYYNEA+G +YVPRA+L+DLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKE+E+CDCLQGFQ+ H
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTH 137

HSP 2 Score: 28.8758 bits (63), Expect = 4.225e-72
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = 1

Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDR+M TFS
Sbjct:  154 KIREEYPDRIMNTFS 168

The following BLAST results are available for this feature:

BLAST of CF503968 vs. ExPASy Swiss-Prot

BLAST of CF503968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412


Match Name	E-value	Identity	Description
TBB5_HUMAN	4.225e-72	88.32	Tubulin beta chain OS=Homo sapiens GN=TUBB PE=1 SV...	[more]
TBB5_CRIGR	4.225e-72	88.32	Tubulin beta-5 chain OS=Cricetulus griseus GN=TUBB...	[more]
TBB5_BOVIN	4.225e-72	88.32	Tubulin beta-5 chain OS=Bos taurus GN=TUBB5 PE=2 S...	[more]
TBB2_CHICK	4.225e-72	88.32	Tubulin beta-2 chain OS=Gallus gallus PE=2 SV=1	[more]
TBB2B_RAT	4.225e-72	88.32	Tubulin beta-2B chain OS=Rattus norvegicus GN=Tubb...	[more]
TBB2B_MOUSE	4.225e-72	88.32	Tubulin beta-2B chain OS=Mus musculus GN=Tubb2b PE...	[more]
TBB2B_HUMAN	4.225e-72	88.32	Tubulin beta-2B chain OS=Homo sapiens GN=TUBB2B PE...	[more]
TBB2B_BOVIN	4.225e-72	88.32	Tubulin beta-2B chain OS=Bos taurus GN=TUBB2B PE=1...	[more]
TBB2A_RAT	4.225e-72	88.32	Tubulin beta-2A chain OS=Rattus norvegicus GN=Tubb...	[more]
TBB2A_MOUSE	4.225e-72	88.32	Tubulin beta-2A chain OS=Mus musculus GN=Tubb2a PE...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_119000-456 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_G11 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF503968 ID=CF503968; Name=CF503968; organism=Citrus sinensis; type=EST; length=661bp
AAAGTCATTGTCAGTTCTATCACATCCAGTCCCTGAATGTTCATGCTTGA
AATATGATCCTACAGAATCGTATGTTAATGCTTCAAGTCCCCTACGTCTT
CCCAAACTTTCTCGCAAATTTTTCTCTCCCTTTCCCGCGAAACAAACAGA
ACAAAAAATGAGAGAAATCTTGCACATCCAGGGTGGGCAATGCGGCAACC
AGATCGGAGCCAAGTTCTGGGAGGTCATCTGCGACGAGCACGGAATTGAC
CACACGGGGAAGTACAGCGGAGACTCCGATCTCCAACTCGAACGCATCAA
TGTTTATTACAACGAGGCCAGCGGCGGAAGGTACGTCCCACGCGCCGTGT
TGATGGATCTGGAGCCTGGGACCATGGACTCTGTTAGATCCGGTCCGTTC
GGGCAGATATTTCGCCCCGATAACTTCGTGTTCGGGCAGTCTGGCGCTGG
CAATAACTGGGCCAAGGGTCATTACACCGAAGGCGCTGAGTTGATCGACT
CTGTTCTGGATGTTGTTAGAAAGGAAGCTGAGAATTGTGATTGCTTGCAG
GGATTTCAAGTATGTCATTCTTTGGGAGGAGGTACTGGTTCTGGTATGGG
AACCCTTCTTATTTCCAGATCAGGGAGGAGTATCCAGATCGCATGATGTT
GACATTTTCCG