CF503990

Overview
NameCF503990
Unique NameCF503990
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length558
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503990 vs. ExPASy Swiss-Prot
Match: ARF2_YEAST (ADP-ribosylation factor 2 OS=Saccharomyces cerevisiae GN=ARF2 PE=1 SV=3)

HSP 1 Score: 277.715 bits (709), Expect = 2.604e-74
Identity = 133/166 (80.12%), Postives = 151/166 (90.96%), Query Frame = 3
Query:   57 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 554
            MGL  +KLFS LF  KEMRILMVGLD AGKTT+LYKLKLGE++TTIPTIGFNVETV+YKNISFTVWDVGGQD+IR LWRHY++NT+G+IFV+DSNDR RI EAR+ + RMLNEDELR+AV LVFANKQDLP AM+AAEIT+KLGLHS+R R W+IQSTCATSGEGL
Sbjct:    1 MGLYASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQSTCATSGEGL 166          
BLAST of CF503990 vs. ExPASy Swiss-Prot
Match: ARF1_PLAFO (ADP-ribosylation factor 1 OS=Plasmodium falciparum (isolate NF54) GN=ARF1 PE=2 SV=2)

HSP 1 Score: 277.715 bits (709), Expect = 2.604e-74
Identity = 129/166 (77.71%), Postives = 157/166 (94.58%), Query Frame = 3
Query:   57 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 554
            MGL  ++LF+RLF KK++RILMVGLDAAGKTTILYK+KLGE+VTTIPTIGFNVETVE++NISFTVWDVGGQDKIRPLWRHY+ NT GLIFVVDSNDR+RI +AR+ LHRM+NE+EL+DA++LVFANKQDLPNAM+AAE+T+KL L+++R+R+W+IQSTCAT G+GL
Sbjct:    1 MGLYVSRLFNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREGLHRMINEEELKDAIILVFANKQDLPNAMSAAEVTEKLHLNTIRERNWFIQSTCATRGDGL 166          
BLAST of CF503990 vs. ExPASy Swiss-Prot
Match: ARF1_YEAST (ADP-ribosylation factor 1 OS=Saccharomyces cerevisiae GN=ARF1 PE=1 SV=3)

HSP 1 Score: 275.404 bits (703), Expect = 1.292e-73
Identity = 132/166 (79.52%), Postives = 150/166 (90.36%), Query Frame = 3
Query:   57 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 554
            MGL  +KLFS LF  KEMRILMVGLD AGKTT+LYKLKLGE++TTIPTIGFNVETV+YKNISFTVWDVGGQD+IR LWRHY++NT+G+IFVVDSNDR RI EAR+ + RMLNEDELR+A  LVFANKQDLP AM+AAEIT+KLGLHS+R R W+IQ+TCATSGEGL
Sbjct:    1 MGLFASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEGL 166          
BLAST of CF503990 vs. ExPASy Swiss-Prot
Match: ARF_GIALA (ADP-ribosylation factor OS=Giardia lamblia PE=3 SV=3)

HSP 1 Score: 251.906 bits (642), Expect = 1.530e-66
Identity = 120/168 (71.43%), Postives = 144/168 (85.71%), Query Frame = 3
Query:   57 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD--RIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 554
            MG   +K+F +LF+KKE+RILMVGLDAAGKTTILYKL LGE+VTT+PTIGFNVETVEYKNI+FTVWDVGGQD IRPLWRHY+QNT  LI+V+DS D +  RI +A++ELH +L EDELRDA LLVFANKQDLP AM+  ++T++LGL  L++R WYIQ TCA SG+GL
Sbjct:    1 MGQGASKIFGKLFSKKEVRILMVGLDAAGKTTILYKLMLGEVVTTVPTIGFNVETVEYKNINFTVWDVGGQDSIRPLWRHYYQNTDALIYVIDSADLEPKRIEDAKNELHTLLGEDELRDAALLVFANKQDLPKAMSTTDLTERLGLQELKKRDWYIQPTCARSGDGL 168          
BLAST of CF503990 vs. ExPASy Swiss-Prot
Match: ARF3_DROME (ADP-ribosylation factor 3 OS=Drosophila melanogaster GN=Arf51F PE=2 SV=3)

HSP 1 Score: 250.751 bits (639), Expect = 3.409e-66
Identity = 117/160 (73.12%), Postives = 138/160 (86.25%), Query Frame = 3
Query:   75 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 554
            KL S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDRI EAR ELHR++N+ E+RDA++L+FANKQDLP+AM   EI +KLGL  +R R+WY+Q +CATSG+GL
Sbjct:    3 KLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARTELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 162          
BLAST of CF503990 vs. ExPASy Swiss-Prot
Match: ARF6_RAT (ADP-ribosylation factor 6 OS=Rattus norvegicus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 249.98 bits (637), Expect = 5.815e-66
Identity = 116/160 (72.50%), Postives = 138/160 (86.25%), Query Frame = 3
Query:   75 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 554
            K+ S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDRI EAR ELHR++N+ E+RDA++L+FANKQDLP+AM   EI +KLGL  +R R+WY+Q +CATSG+GL
Sbjct:    3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 162          
BLAST of CF503990 vs. ExPASy Swiss-Prot
Match: ARF6_PIG (ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE=2 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 5.815e-66
Identity = 116/160 (72.50%), Postives = 138/160 (86.25%), Query Frame = 3
Query:   75 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 554
            K+ S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDRI EAR ELHR++N+ E+RDA++L+FANKQDLP+AM   EI +KLGL  +R R+WY+Q +CATSG+GL
Sbjct:    3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 162          
BLAST of CF503990 vs. ExPASy Swiss-Prot
Match: ARF6_MOUSE (ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 249.98 bits (637), Expect = 5.815e-66
Identity = 116/160 (72.50%), Postives = 138/160 (86.25%), Query Frame = 3
Query:   75 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 554
            K+ S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDRI EAR ELHR++N+ E+RDA++L+FANKQDLP+AM   EI +KLGL  +R R+WY+Q +CATSG+GL
Sbjct:    3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 162          
BLAST of CF503990 vs. ExPASy Swiss-Prot
Match: ARF6_HUMAN (ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 PE=1 SV=2)

HSP 1 Score: 249.98 bits (637), Expect = 5.815e-66
Identity = 116/160 (72.50%), Postives = 138/160 (86.25%), Query Frame = 3
Query:   75 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 554
            K+ S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDRI EAR ELHR++N+ E+RDA++L+FANKQDLP+AM   EI +KLGL  +R R+WY+Q +CATSG+GL
Sbjct:    3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 162          
BLAST of CF503990 vs. ExPASy Swiss-Prot
Match: ARF6_XENLA (ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf6 PE=2 SV=2)

HSP 1 Score: 249.21 bits (635), Expect = 9.918e-66
Identity = 116/160 (72.50%), Postives = 137/160 (85.62%), Query Frame = 3
Query:   75 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 554
            K+FS++F  KEMRILM GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDRI EAR ELHR++N+ E+RDA++L+FANKQDLP+AM   EI +KLGL  +R R+WY+Q +CA SG+GL
Sbjct:    3 KMFSKIFGNKEMRILMRGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCPDRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAASGDGL 162          
The following BLAST results are available for this feature:
BLAST of CF503990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
ARF2_YEAST2.604e-7480.12ADP-ribosylation factor 2 OS=Saccharomyces cerevis... [more]
ARF1_PLAFO2.604e-7477.71ADP-ribosylation factor 1 OS=Plasmodium falciparum... [more]
ARF1_YEAST1.292e-7379.52ADP-ribosylation factor 1 OS=Saccharomyces cerevis... [more]
ARF_GIALA1.530e-6671.43ADP-ribosylation factor OS=Giardia lamblia PE=3 SV... [more]
ARF3_DROME3.409e-6673.13ADP-ribosylation factor 3 OS=Drosophila melanogast... [more]
ARF6_RAT5.815e-6672.50ADP-ribosylation factor 6 OS=Rattus norvegicus GN=... [more]
ARF6_PIG5.815e-6672.50ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE... [more]
ARF6_MOUSE5.815e-6672.50ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 ... [more]
ARF6_HUMAN5.815e-6672.50ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 ... [more]
ARF6_XENLA9.918e-6672.50ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-478 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503990 ID=CF503990; Name=CF503990; organism=Citrus sinensis; type=EST; length=558bp
CCCCCCTCCCCTCTCTCTCTCGCGTTCTCTGAAGATAGTGATCCCCAGCT
GGAAGAATGGGGCTGACTTTCACAAAGCTGTTCAGCCGGCTCTTTGCCAA
GAAAGAGATGCGAATTCTAATGGTTGGTCTTGATGCTGCTGGTAAGACCA
CTATCTTGTACAAGCTCAAGCTTGGAGAGATTGTCACCACAATTCCTACC
ATTGGGTTTAATGTGGAGACCGTTGAATATAAAAACATCAGTTTCACTGT
GTGGGATGTTGGTGGCCAGGACAAGATTCGTCCCTTGTGGAGGCATTATT
TCCAGAACACTCAAGGTCTCATTTTTGTTGTGGACAGCAATGACAGAGAC
CGTATTGTAGAAGCAAGGGATGAATTGCATAGGATGTTGAATGAGGATGA
GCTGCGAGATGCAGTGTTGCTTGTATTTGCTAACAAACAGGATCTTCCAA
ATGCAATGAATGCTGCTGAGATTACTGATAAGCTTGGCCTCCACTCCCTC
AGGCAGCGCCACTGGTACATCCAGAGCACCTGTGCAACCTCTGGTGAGGG
TCTTATGA
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