CF504002

Overview
NameCF504002
Unique NameCF504002
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length341
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9272 contig Csv1_Contig9272:41..381. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504002 vs. ExPASy Swiss-Prot
Match: CRF5_ARATH (Ethylene-responsive transcription factor CRF5 OS=Arabidopsis thaliana GN=CRF5 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.146e-12
Identity = 31/61 (50.82%), Postives = 39/61 (63.93%), Query Frame = 2
Query:   62 IRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPTP 244
            ++YRGVR+RPWG++AAEIRDP  +TR+WLGTF T                G  A+TNF TP
Sbjct:   97 VKYRGVRQRPWGKFAAEIRDPSSRTRLWLGTFATAEEAAIGYDRAAIRIKGHNAQTNFLTP 157          
BLAST of CF504002 vs. ExPASy Swiss-Prot
Match: ABR1_ARATH (Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.146e-12
Identity = 33/58 (56.90%), Postives = 36/58 (62.07%), Query Frame = 2
Query:   65 RYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 238
            RYRGVR+RPWG++AAEIRDP K  RVWLGTFD                 G KAK NFP
Sbjct:  184 RYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDNAESAARAYDEAALRFRGNKAKLNFP 241          
BLAST of CF504002 vs. ExPASy Swiss-Prot
Match: EF113_ARATH (Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.721e-12
Identity = 32/57 (56.14%), Postives = 36/57 (63.16%), Query Frame = 2
Query:   68 YRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 238
            YRGVR+RPWG++AAEIRDP K  RVWLGTF+T                G KAK NFP
Sbjct:   39 YRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNFP 95          
BLAST of CF504002 vs. ExPASy Swiss-Prot
Match: CRF1_ARATH (Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.721e-12
Identity = 30/60 (50.00%), Postives = 38/60 (63.33%), Query Frame = 2
Query:   65 RYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPTP 244
            ++RGVR+RPWG++AAEIRDP ++ RVWLGTFDT                G  A+ NFP P
Sbjct:   86 KFRGVRQRPWGKWAAEIRDPSRRVRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNFPPP 145          
BLAST of CF504002 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.778e-12
Identity = 32/57 (56.14%), Postives = 36/57 (63.16%), Query Frame = 2
Query:   68 YRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 238
            YRG+RKRPWG++AAEIRDP K  RVWLGTF+T                G KAK NFP
Sbjct:   79 YRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFP 135          
BLAST of CF504002 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.778e-12
Identity = 31/58 (53.45%), Postives = 37/58 (63.79%), Query Frame = 2
Query:   65 RYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 238
            +YRG+R+RPWG++AAEIRDP K +R WLGTFDT                G KAK NFP
Sbjct:  127 QYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNFP 184          
BLAST of CF504002 vs. ExPASy Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.778e-12
Identity = 31/57 (54.39%), Postives = 37/57 (64.91%), Query Frame = 2
Query:   68 YRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 238
            YRGVR+RPWG++AAEIRDP + TRVWLGTF+T                G +AK NFP
Sbjct:  136 YRGVRQRPWGKFAAEIRDPKRATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNFP 192          
BLAST of CF504002 vs. ExPASy Swiss-Prot
Match: EF105_ARATH (Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana GN=ERF105 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.778e-12
Identity = 34/58 (58.62%), Postives = 37/58 (63.79%), Query Frame = 2
Query:   68 YRGVRKRPWGRYAAEIRDPGKK-TRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 238
            YRGVR+RPWG+YAAEIRDP KK  RVWLGTFDT                G+KA  NFP
Sbjct:   72 YRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNFP 129          
BLAST of CF504002 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.497e-11
Identity = 30/61 (49.18%), Postives = 38/61 (62.30%), Query Frame = 2
Query:   65 RYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPTPN 247
            +YRG+R+RPWG++AAEIRDP +  R+WLGTF T                G+KAK NFP  N
Sbjct:  124 QYRGIRQRPWGKWAAEIRDPREGARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNFPEEN 184          
BLAST of CF504002 vs. ExPASy Swiss-Prot
Match: ERF5_TOBAC (Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.497e-11
Identity = 33/58 (56.90%), Postives = 38/58 (65.52%), Query Frame = 2
Query:   68 YRGVRKRPWGRYAAEIRDPGKK-TRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 238
            YRGVR+RPWG++AAEIRDP +K TRVWLGTFDT                G+KA  NFP
Sbjct:  145 YRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAFKLRGSKAIVNFP 202          
The following BLAST results are available for this feature:
BLAST of CF504002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
CRF5_ARATH5.146e-1250.82Ethylene-responsive transcription factor CRF5 OS=A... [more]
ABR1_ARATH5.146e-1256.90Ethylene-responsive transcription factor ABR1 OS=A... [more]
EF113_ARATH6.721e-1256.14Ethylene-responsive transcription factor ERF113 OS... [more]
CRF1_ARATH6.721e-1250.00Ethylene-responsive transcription factor CRF1 OS=A... [more]
RAP23_ARATH8.778e-1256.14Ethylene-responsive transcription factor RAP2-3 OS... [more]
RAP22_ARATH8.778e-1253.45Ethylene-responsive transcription factor RAP2-2 OS... [more]
EF109_ARATH8.778e-1254.39Ethylene-responsive transcription factor ERF109 OS... [more]
EF105_ARATH8.778e-1258.62Ethylene-responsive transcription factor ERF105 OS... [more]
RA212_ARATH1.497e-1149.18Ethylene-responsive transcription factor RAP2-12 O... [more]
ERF5_TOBAC1.497e-1156.90Ethylene-responsive transcription factor 5 OS=Nico... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-490 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504002 ID=CF504002; Name=CF504002; organism=Citrus sinensis; type=EST; length=341bp
TCCGAGAGATAAGCTCAACAAACCATCCTCTAACCCGAATCCGAATTCGA
AGGATATGGAGATCCGATACAGAGGAGTGAGGAAGCGGCCGTGGGGGCGT
TACGCCGCCGAGATCCGGGACCCGGGGAAGAAAACCCGCGTCTGGCTCGG
CACCTTCGACACCGCCGAGGAAGCAGCACGTGCCTACGACGCAGCAGCGC
GTGAGTTCCGCGGCGCCAAAGCCAAGACAAACTTCCCAACGCCAAACGAA
ATCCTTGGCACCCTCGCCCGCAGCCCCAGCCAGAGCAGCACCGTGGAGTC
ATCCTCTCCTCCTCCGCCGACGCTGCTGCCACAGCCACAGC
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