CF504002

Overview
NameCF504002
Unique NameCF504002
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length341
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9272 contig Csv1_Contig9272:41..381. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504002 vs. ExPASy Swiss-Prot
Match: ERF5_NICSY (Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.497e-11
Identity = 33/58 (56.90%), Postives = 38/58 (65.52%), Query Frame = 2
Query:   68 YRGVRKRPWGRYAAEIRDPGKK-TRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 238
            YRGVR+RPWG++AAEIRDP +K TRVWLGTFDT                G+KA  NFP
Sbjct:  138 YRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAYKLRGSKAIVNFP 195          
BLAST of CF504002 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.956e-11
Identity = 31/57 (54.39%), Postives = 35/57 (61.40%), Query Frame = 2
Query:   68 YRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 238
            YRG+R+RPWG++AAEIRDP K  RVWLGTF T                G KAK NFP
Sbjct:   50 YRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNFP 106          
BLAST of CF504002 vs. ExPASy Swiss-Prot
Match: ERF87_ARATH (Ethylene-responsive transcription factor ERF087 OS=Arabidopsis thaliana GN=ERF087 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.336e-11
Identity = 32/59 (54.24%), Postives = 36/59 (61.02%), Query Frame = 2
Query:   59 EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNF 235
            EI+Y GVR+RPWGRYAAEIR+P  K R WLGTFDT                G  A+TNF
Sbjct:   36 EIKYVGVRRRPWGRYAAEIRNPTTKERYWLGTFDTAEEAALAYDRAARSIRGLTARTNF 94          
BLAST of CF504002 vs. ExPASy Swiss-Prot
Match: ERF86_ARATH (Ethylene-responsive transcription factor ERF086 OS=Arabidopsis thaliana GN=ERF086 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.336e-11
Identity = 33/64 (51.56%), Postives = 39/64 (60.94%), Query Frame = 2
Query:   65 RYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP-TPNEI 253
            R+ GVR+RPWGRYAAEIRDP  K R WLGTFDT                G +A+TNF  TP ++
Sbjct:   35 RFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAHEAALAYDRAALSMRGTQARTNFVYTPTDV 98          
BLAST of CF504002 vs. ExPASy Swiss-Prot
Match: EF104_ARATH (Ethylene-responsive transcription factor ERF104 OS=Arabidopsis thaliana GN=ERF104 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.336e-11
Identity = 33/61 (54.10%), Postives = 37/61 (60.66%), Query Frame = 2
Query:   59 EIRYRGVRKRPWGRYAAEIRDPGKK-TRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 238
            E  YRGVR+RPWG+YAAEIRDP KK  R+WLGT+DT                G KA  NFP
Sbjct:   85 ERHYRGVRRRPWGKYAAEIRDPNKKGCRIWLGTYDTAVEAGRAYDQAAFQLRGRKAILNFP 145          
BLAST of CF504002 vs. ExPASy Swiss-Prot
Match: LEP_ARATH (Ethylene-responsive transcription factor LEP OS=Arabidopsis thaliana GN=LEP PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.690e-11
Identity = 31/57 (54.39%), Postives = 35/57 (61.40%), Query Frame = 2
Query:   65 RYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNF 235
            R+ GVR+RPWGRYAAEIRDP  K R WLGTFDT                G +A+TNF
Sbjct:   19 RFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAEEAALAYDRAARSMRGTRARTNF 75          
BLAST of CF504002 vs. ExPASy Swiss-Prot
Match: EF102_ARATH (Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.690e-11
Identity = 32/58 (55.17%), Postives = 38/58 (65.52%), Query Frame = 2
Query:   68 YRGVRKRPWGRYAAEIRDPGKK-TRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 238
            YRGVR+RPWG++AAEIRDP K+ +RVWLGTFDT                G+KA  NFP
Sbjct:  156 YRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFP 213          
BLAST of CF504002 vs. ExPASy Swiss-Prot
Match: ERF99_ARATH (Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.431e-11
Identity = 31/60 (51.67%), Postives = 39/60 (65.00%), Query Frame = 2
Query:   62 IRYRGVRKRPWGRYAAEIRDPGKK-TRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 238
            ++YRGVR+RPWG++AAEIRDP K   RVWLGT++T                G+KAK NFP
Sbjct:   90 MQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNFP 149          
BLAST of CF504002 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.705e-11
Identity = 29/58 (50.00%), Postives = 37/58 (63.79%), Query Frame = 2
Query:   65 RYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 238
            ++RG+R+RPWG++AAEIRDP K  RVWLGTF++                G KAK NFP
Sbjct:  119 QFRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNFP 176          
The following BLAST results are available for this feature:
BLAST of CF504002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
ERF5_NICSY1.497e-1156.90Ethylene-responsive transcription factor 5 OS=Nico... [more]
ERF71_ARATH1.956e-1154.39Ethylene-responsive transcription factor ERF071 OS... [more]
ERF87_ARATH3.336e-1154.24Ethylene-responsive transcription factor ERF087 OS... [more]
ERF86_ARATH3.336e-1151.56Ethylene-responsive transcription factor ERF086 OS... [more]
EF104_ARATH3.336e-1154.10Ethylene-responsive transcription factor ERF104 OS... [more]
LEP_ARATH5.690e-1154.39Ethylene-responsive transcription factor LEP OS=Ar... [more]
EF102_ARATH5.690e-1155.17Ethylene-responsive transcription factor 5 OS=Arab... [more]
ERF99_ARATH7.431e-1151.67Ethylene-responsive transcription factor 13 OS=Ara... [more]
ERF1_ORYSJ9.705e-1150.00Ethylene-responsive transcription factor 1 OS=Oryz... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-490 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504002 ID=CF504002; Name=CF504002; organism=Citrus sinensis; type=EST; length=341bp
TCCGAGAGATAAGCTCAACAAACCATCCTCTAACCCGAATCCGAATTCGA
AGGATATGGAGATCCGATACAGAGGAGTGAGGAAGCGGCCGTGGGGGCGT
TACGCCGCCGAGATCCGGGACCCGGGGAAGAAAACCCGCGTCTGGCTCGG
CACCTTCGACACCGCCGAGGAAGCAGCACGTGCCTACGACGCAGCAGCGC
GTGAGTTCCGCGGCGCCAAAGCCAAGACAAACTTCCCAACGCCAAACGAA
ATCCTTGGCACCCTCGCCCGCAGCCCCAGCCAGAGCAGCACCGTGGAGTC
ATCCTCTCCTCCTCCGCCGACGCTGCTGCCACAGCCACAGC
back to top