CF504012

Overview
NameCF504012
Unique NameCF504012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504012 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.416e-29
Identity = 60/128 (46.88%), Postives = 79/128 (61.72%), Query Frame = 1
Query:  166 SREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLP--GQYYGRGPIQLTWNCNYLRCGEALG 543
            +  MFE +LP RN+  CP +GFYTYDA+  A + +PGFG +G++  RKRE+AAFFAQT  ET+G         + WGYC + +++P +SD          P    YYGRGP+QL WN NY  CG  LG
Sbjct:   68 TESMFEQMLPNRNNDSCPGKGFYTYDAYFVATEFYPGFGMTGDDDTRKRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELNP-NSDYCDPKTKSSYPCVADYYGRGPLQLRWNYNYGECGNYLG 194          
BLAST of CF504012 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 1.566e-28
Identity = 59/105 (56.19%), Postives = 70/105 (66.67%), Query Frame = 1
Query:   94 GSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYI 408
            G G   G    G G   G L  II   MF+D+L YRND +CPA GFYTY+AFI AA+ FP FGN+G++ MRKREIAAF  QT HET G W  A G +Y WGYC++
Sbjct:   66 GGGGGGGGGGGGGGGGDGYLSDIIPESMFDDMLKYRNDPQCPAVGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETNGWWPAAQGDQYDWGYCHM 170          
BLAST of CF504012 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.556e-28
Identity = 65/138 (47.10%), Postives = 87/138 (63.04%), Query Frame = 1
Query:  142 GGELG--KIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSD-XXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALG 543
            GG  G   +++ + FE +LP+R+DA CPARGFY Y AF+ AA AFP F  +G+   RKRE+AAF AQT H T+       GG Y+WGYCY ++V  A+SD           PG+ Y+ RGP+Q+ +N NY   GEA+G
Sbjct:   92 GGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCY-KEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIG 221          
BLAST of CF504012 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.556e-28
Identity = 65/138 (47.10%), Postives = 87/138 (63.04%), Query Frame = 1
Query:  142 GGELG--KIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSD-XXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALG 543
            GG  G   +++ + FE +LP+R+DA CPARGFY Y AF+ AA AFP F  +G+   RKRE+AAF AQT H T+       GG Y+WGYCY ++V  A+SD           PG+ Y+ RGP+Q+ +N NY   GEA+G
Sbjct:   92 GGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCY-KEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIG 221          
BLAST of CF504012 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.412e-23
Identity = 58/131 (44.27%), Postives = 77/131 (58.78%), Query Frame = 1
Query:  151 LGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALG 543
            +  +IS  +FE +L +R        GFYTYDAFI AA++FP F  +G+  +RKRE+AAF AQT HETTGGW  AP G Y  G         ++SD             Y+GRGPIQ+++N NY   G+A+G
Sbjct:    1 VSSVISSSLFEKMLLHR--------GFYTYDAFIAAAKSFPAFATTGSTDVRKREVAAFLAQTSHETTGGWPTAPDGPYELG---------STSD-------------YFGRGPIQISYNYNYGAAGKAIG 101          
BLAST of CF504012 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 2.677e-20
Identity = 51/141 (36.17%), Postives = 78/141 (55.32%), Query Frame = 1
Query:  124 TGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYG-RGPIQLTWNCNYLRCGEALG 543
            +G+ T       +++  +F+ +  +R D  CP++GFY+Y +F+ AA++FP FG  G+   RKRE+AAF A     T+G  +D     +AWG C+I   +   +D           G+ Y  RGPIQLT N NY   G+A+G
Sbjct:  121 SGNSTANSIGNVVVTEPLFDQMFSHRKD--CPSQGFYSYHSFLVAAESFPAFGTIGDVATRKREVAAFLAHISQATSGERSDVE-NPHAWGLCHINTTTVTENDFCTSSDWPCAAGKKYSPRGPIQLTHNFNYGLAGQAIG 258          
BLAST of CF504012 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.266e-19
Identity = 56/154 (36.36%), Postives = 77/154 (50.00%), Query Frame = 1
Query:   91 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASS---DXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALG 543
            CG+G   G  D    T+   +  I++ E F  L+   +D  C A+GFYT DAF+ AA  +P FG +G+    KREIAAFFA   HET               +CYI ++   S    D             YYGRGP+Q++WN NY   G+++G
Sbjct:   49 CGTGCQAGPCDVP-ATNDVSVASIVTPEFFAALVAQADDG-CAAKGFYTRDAFLTAAGGYPSFGRTGSVDDSKREIAAFFAHANHETI-------------KFCYIEEIDGPSKNYCDETSTQWPCMAGKGYYGRGPLQISWNFNYGPAGQSIG 187          
BLAST of CF504012 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 9.521e-18
Identity = 57/157 (36.31%), Postives = 78/157 (49.68%), Query Frame = 1
Query:   91 CGSGVVCGERDTGHGTD----GGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXX--LPGQ-YYGRGPIQLTWNCNYLRCGEAL 540
            CG+G   G   +  GT     GG +G I+++  F  ++       C  + FYT D+FI AA  FP F NS    + +REIA  FA   HET               +CYI +++ AS D            PG+ Y+GRGPIQL+WN NY  CG++L
Sbjct:   48 CGTGCRSGPCRSPGGTPSPPGGGSVGSIVTQAFFNGIINQAGGG-CAGKNFYTRDSFINAANTFPNFANS----VTRREIATMFAHFTHETGH-------------FCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGACGQSL 186          
BLAST of CF504012 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.618e-17
Identity = 53/160 (33.12%), Postives = 75/160 (46.88%), Query Frame = 1
Query:   91 CGSGVVCGERDTGHGTDGG-----ELGKIISREMFEDLLPYRNDAR--CPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQV--SPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALG 543
            CG G   G   +G G  G       +  +++   F  +   +N A   C  + FYT  AF+ A + +PGF + G++   KREIAAFFA   HET               +CYI ++  S A  D            +YYGRGP+Q++WN NY   G A+G
Sbjct:   44 CGDGCQSGPCRSGRGGGGSGGGGANVASVVTSSFFNGI---KNQAGSGCEGKNFYTRSAFLSAVKGYPGFAHGGSQVQGKREIAAFFAHATHET-------------GHFCYISEINKSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNYGPAGRAIG 187          
BLAST of CF504012 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.171e-17
Identity = 60/168 (35.71%), Postives = 77/168 (45.83%), Query Frame = 1
Query:   88 NCGSGVVCGERDT-----------GHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQ----VSPASSDXXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALG 543
            NC SG   G   T           G G  G  +  I+S+  F+ ++  +  A CP + FYT  AF+ A    P FGN G+    KREIAAFFA   HETT               C+I +    V  A  D           G+ YYGRGP+QL+WN NY   G+A+G
Sbjct:   55 NCQSGPCEGGTPTTPTTPTTPTTPGTGGGGSSVSDIVSQAFFDGIIG-QAAASCPGKNFYTRAAFLSAVD--PKFGNEGSSDDNKREIAAFFAHISHETTN-------------LCHIEERDGDVGDAYCDQDKAAQYPCAAGKKYYGRGPLQLSWNYNYALAGQAIG 206          
The following BLAST results are available for this feature:
BLAST of CF504012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI8_POPTR1.416e-2946.88Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHIB_POPTR1.566e-2856.19Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHI7_ORYSJ4.556e-2847.10Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI4.556e-2847.10Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHIT_AVESA4.412e-2344.27Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
AGI_URTDI2.677e-2036.17Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHI6_ORYSJ2.266e-1936.36Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_BRANA9.521e-1836.31Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHIB_MAIZE3.618e-1733.13Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHIP_BETVU6.171e-1735.71Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-500 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504012 ID=CF504012; Name=CF504012; organism=Citrus sinensis; type=EST; length=543bp
ATAACTCTTGCTTTCAAAATGAGGCTCATTGGGTCCTTACTAATTTTCTC
TCTAGTTTTATCTTTTGTACTAGGAGGTTCAGCACAGAATTGTGGAAGCG
GCGTTGTGTGCGGTGAACGTGATACTGGCCACGGGACGGATGGCGGTGAA
CTGGGCAAGATCATCTCAAGGGAGATGTTTGAAGACTTGCTTCCGTATAG
AAATGATGCCCGATGCCCTGCCAGAGGCTTCTACACTTATGATGCTTTTA
TAGAGGCAGCCCAAGCTTTTCCAGGCTTTGGTAACTCTGGAAATGAAACC
ATGCGTAAAAGAGAAATTGCTGCCTTTTTTGCCCAAACTGGCCATGAAAC
TACTGGGGGATGGACCGATGCACCTGGTGGAGAATATGCTTGGGGATATT
GCTATATTAGGCAAGTTAGCCCTGCGTCGTCCGACTACTGTTATCCTTAC
TGTCCATGTCCCTTGCCAGGGCAATACTATGGCCGAGGTCCAATTCAACT
CACTTGGAATTGCAATTACTTAAGGTGCGGAGAAGCCTTGGGG
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