CF504016

Overview
NameCF504016
Unique NameCF504016
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length323
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3382 contig Csv1_Contig3382:553..875. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_ESCF3 (Bifunctional polymyxin resistance protein arnA OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=arnA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.758e-13
Identity = 38/88 (43.18%), Postives = 50/88 (56.82%), Query Frame = 3
Query:    3 LIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            +I  ST EVYG     F                 ED S  I G I K RW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D
Sbjct:  427 IIFPSTSEVYGMCTDKFFD---------------EDHSNLIVGPINKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD 499          
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_AERS4 (Bifunctional polymyxin resistance protein arnA OS=Aeromonas salmonicida (strain A449) GN=arnA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.758e-13
Identity = 37/82 (45.12%), Postives = 49/82 (59.76%), Query Frame = 3
Query:   21 CEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            C  Y K I    P  S +      +   ED S  I G I KQRW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D
Sbjct:  422 CVKYNKRI--IFPSTSEVYGMCDDHSFDEDESRLIVGPIHKQRWIYSVSKQLLDRVIWAYGKKEGLNFTLFRPFNWMGPRLD 501          
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_PHOLL (Bifunctional polymyxin resistance protein arnA OS=Photorhabdus luminescens subsp. laumondii GN=arnA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.214e-13
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 3
Query:  105 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            ED S  I G I KQRW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D
Sbjct:  446 EDDSRLIVGPINKQRWIYSVSKQLLDRVIWAYGEKEGLKFTLFRPFNWMGPRLD 499          
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_PSEAE (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa GN=arnA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.115e-13
Identity = 39/84 (46.43%), Postives = 52/84 (61.90%), Query Frame = 3
Query:   15 STCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            ST EVYG            + QDP +    ED S  + G I KQRW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D
Sbjct:  433 STSEVYG------------MCQDPDF---DEDRSNLVVGPINKQRWIYSVSKQLLDRVIWAYG-QQGLRFTLFRPFNWMGPRLD 500          
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_PSEAB (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=arnA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.115e-13
Identity = 39/84 (46.43%), Postives = 52/84 (61.90%), Query Frame = 3
Query:   15 STCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            ST EVYG            + QDP +    ED S  + G I KQRW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D
Sbjct:  433 STSEVYG------------MCQDPDF---DEDRSNLVVGPINKQRWIYSVSKQLLDRVIWAYG-QQGLRFTLFRPFNWMGPRLD 500          
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_PSEA8 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa (strain LESB58) GN=arnA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.115e-13
Identity = 39/84 (46.43%), Postives = 52/84 (61.90%), Query Frame = 3
Query:   15 STCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            ST EVYG            + QDP +    ED S  + G I KQRW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D
Sbjct:  433 STSEVYG------------MCQDPDF---DEDRSNLVVGPINKQRWIYSVSKQLLDRVIWAYG-QQGLRFTLFRPFNWMGPRLD 500          
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_PSEA7 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa (strain PA7) GN=arnA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.115e-13
Identity = 39/84 (46.43%), Postives = 52/84 (61.90%), Query Frame = 3
Query:   15 STCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            ST EVYG            + QDP +    ED S  + G I KQRW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D
Sbjct:  433 STSEVYG------------MCQDPDF---DEDRSNLVVGPINKQRWIYSVSKQLLDRVIWAYG-QQGLRFTLFRPFNWMGPRLD 500          
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_PSE14 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=arnA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.115e-13
Identity = 39/84 (46.43%), Postives = 53/84 (63.10%), Query Frame = 3
Query:   15 STCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            ST EVYG            + QD ++    ED S  I G I KQRW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D
Sbjct:  434 STSEVYG------------MCQDASF---NEDTSNLIVGPINKQRWIYSVSKQLLDRVIWAYG-QKGLQFTLFRPFNWMGPRLD 501          
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_ECO27 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=arnA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.060e-12
Identity = 37/88 (42.05%), Postives = 50/88 (56.82%), Query Frame = 3
Query:    3 LIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            +I  ST EVYG     +                 ED S  I G + K RW Y+ +KQLI+R+I+A G + GL+FT+ RPFNW+GPR+D
Sbjct:  427 IIFPSTSEVYGMCSDKYFD---------------EDHSNLIVGPVNKPRWIYSVSKQLIDRVIWAYGEKEGLQFTLFRPFNWMGPRLD 499          
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_SHISS (Bifunctional polymyxin resistance protein arnA OS=Shigella sonnei (strain Ss046) GN=arnA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.808e-12
Identity = 36/88 (40.91%), Postives = 50/88 (56.82%), Query Frame = 3
Query:    3 LIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            +I  ST EVYG     +                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D
Sbjct:  427 IIFPSTSEVYGMCSDKYFD---------------EDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD 499          
The following BLAST results are available for this feature:
BLAST of CF504016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
ARNA_ESCF34.758e-1343.18Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_AERS44.758e-1345.12Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PHOLL6.214e-1357.41Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEAE8.115e-1346.43Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEAB8.115e-1346.43Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEA88.115e-1346.43Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEA78.115e-1346.43Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSE148.115e-1346.43Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECO271.060e-1242.05Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SHISS1.808e-1240.91Bifunctional polymyxin resistance protein arnA OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-504 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504016 ID=CF504016; Name=CF504016; organism=Citrus sinensis; type=EST; length=323bp
GTTTGATTCACTTCTCTACTTGTGAAGTATATGGAAAGACCATTGGAAGC
TTTCTTCCTAAAGATAGTCCTCTTCGGCAGGATCCTGCTTACTATGTTCT
TAAAGAAGATGCCTCCCCCTGCATTTTTGGCTCTATTGAGAAGCAGAGGT
GGTCGTATGCATGTGCAAAGCAATTGATTGAAAGGCTGATTTATGCTGAG
GGTGCAGAGAATGGTCTTGAGTTCACCATTGTGAGGCCCTTTAACTGGAT
TGGTCCGAGGATGGACTTCATTCCCGGCATTGATGGTCCAAGTGAGGGTG
TTCCAAGGGTTCTGGCATGCTTT
back to top