CF504016

Overview
NameCF504016
Unique NameCF504016
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length323
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3382 contig Csv1_Contig3382:553..875. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_ECOLC (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=arnA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.808e-12
Identity = 36/88 (40.91%), Postives = 50/88 (56.82%), Query Frame = 3 
Query:    3 LIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            +I  ST EVYG     +                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D
Sbjct:  427 IIFPSTSEVYGMCSDKYFD---------------EDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD 499
[Close]
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_ECOL6 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O6 GN=arnA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.808e-12
Identity = 36/88 (40.91%), Postives = 50/88 (56.82%), Query Frame = 3 
Query:    3 LIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            +I  ST EVYG     +                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D
Sbjct:  427 IIFPSTSEVYGMCSDKYFD---------------EDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD 499
[Close]
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_ECOL5 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=arnA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.808e-12
Identity = 36/88 (40.91%), Postives = 50/88 (56.82%), Query Frame = 3 
Query:    3 LIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            +I  ST EVYG     +                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D
Sbjct:  427 IIFPSTSEVYGMCSDKYFD---------------EDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD 499
[Close]
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_ECOK1 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O1:K1 / APEC GN=arnA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.808e-12
Identity = 36/88 (40.91%), Postives = 50/88 (56.82%), Query Frame = 3 
Query:    3 LIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            +I  ST EVYG     +                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D
Sbjct:  427 IIFPSTSEVYGMCSDKYFD---------------EDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD 499
[Close]
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_ECOHS (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O9:H4 (strain HS) GN=arnA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.808e-12
Identity = 36/88 (40.91%), Postives = 50/88 (56.82%), Query Frame = 3 
Query:    3 LIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            +I  ST EVYG     +                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D
Sbjct:  427 IIFPSTSEVYGMCSDKYFD---------------EDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD 499
[Close]
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_ECODH (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain K12 / DH10B) GN=arnA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.808e-12
Identity = 36/88 (40.91%), Postives = 50/88 (56.82%), Query Frame = 3 
Query:    3 LIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            +I  ST EVYG     +                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D
Sbjct:  427 IIFPSTSEVYGMCSDKYFD---------------EDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD 499
[Close]
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_ECOBW (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain K12 / BW2952) GN=arnA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.808e-12
Identity = 36/88 (40.91%), Postives = 50/88 (56.82%), Query Frame = 3 
Query:    3 LIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            +I  ST EVYG     +                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D
Sbjct:  427 IIFPSTSEVYGMCSDKYFD---------------EDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD 499
[Close]
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_ECO8A (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O8 (strain IAI1) GN=arnA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.808e-12
Identity = 36/88 (40.91%), Postives = 50/88 (56.82%), Query Frame = 3 
Query:    3 LIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            +I  ST EVYG     +                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D
Sbjct:  427 IIFPSTSEVYGMCSDKYFD---------------EDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD 499
[Close]
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_ECO81 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O81 (strain ED1a) GN=arnA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.808e-12
Identity = 36/88 (40.91%), Postives = 50/88 (56.82%), Query Frame = 3 
Query:    3 LIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            +I  ST EVYG     +                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D
Sbjct:  427 IIFPSTSEVYGMCSDKYFD---------------EDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD 499
[Close]
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_ECO7I (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=arnA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.808e-12
Identity = 36/88 (40.91%), Postives = 50/88 (56.82%), Query Frame = 3 
Query:    3 LIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            +I  ST EVYG     +                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D
Sbjct:  427 IIFPSTSEVYGMCSDKYFD---------------EDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD 499
The following BLAST results are available for this feature:
BLAST of CF504016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
ARNA_ECOLC1.808e-1240.91Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOL61.808e-1240.91Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOL51.808e-1240.91Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOK11.808e-1240.91Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOHS1.808e-1240.91Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECODH1.808e-1240.91Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOBW1.808e-1240.91Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECO8A1.808e-1240.91Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECO811.808e-1240.91Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECO7I1.808e-1240.91Bifunctional polymyxin resistance protein arnA OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-504 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504016 ID=CF504016; Name=CF504016; organism=Citrus sinensis; type=EST; length=323bp
GTTTGATTCACTTCTCTACTTGTGAAGTATATGGAAAGACCATTGGAAGC
TTTCTTCCTAAAGATAGTCCTCTTCGGCAGGATCCTGCTTACTATGTTCT
TAAAGAAGATGCCTCCCCCTGCATTTTTGGCTCTATTGAGAAGCAGAGGT
GGTCGTATGCATGTGCAAAGCAATTGATTGAAAGGCTGATTTATGCTGAG
GGTGCAGAGAATGGTCTTGAGTTCACCATTGTGAGGCCCTTTAACTGGAT
TGGTCCGAGGATGGACTTCATTCCCGGCATTGATGGTCCAAGTGAGGGTG
TTCCAAGGGTTCTGGCATGCTTT
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