CF504016

Overview
NameCF504016
Unique NameCF504016
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length323
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_ECO5E (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=arnA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.808e-12
Identity = 36/88 (40.91%), Postives = 50/88 (56.82%), Query Frame = 3
Query:    3 LIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            +I  ST EVYG     +                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D
Sbjct:  427 IIFPSTSEVYGMCSDKYFD---------------EDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD 499          
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_ECO57 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O157:H7 GN=arnA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.808e-12
Identity = 36/88 (40.91%), Postives = 50/88 (56.82%), Query Frame = 3
Query:    3 LIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            +I  ST EVYG     +                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D
Sbjct:  427 IIFPSTSEVYGMCSDKYFD---------------EDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD 499          
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_ECO55 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain 55989 / EAEC) GN=arnA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.808e-12
Identity = 36/88 (40.91%), Postives = 50/88 (56.82%), Query Frame = 3
Query:    3 LIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            +I  ST EVYG     +                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D
Sbjct:  427 IIFPSTSEVYGMCSDKYFD---------------EDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD 499          
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_ECO45 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=arnA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.808e-12
Identity = 36/88 (40.91%), Postives = 50/88 (56.82%), Query Frame = 3
Query:    3 LIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            +I  ST EVYG     +                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D
Sbjct:  427 IIFPSTSEVYGMCSDKYFD---------------EDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD 499          
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_ECO24 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=arnA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.808e-12
Identity = 36/88 (40.91%), Postives = 50/88 (56.82%), Query Frame = 3
Query:    3 LIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            +I  ST EVYG     +                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D
Sbjct:  427 IIFPSTSEVYGMCSDKYFD---------------EDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD 499          
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_PSEPF (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain Pf0-1) GN=arnA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.361e-12
Identity = 40/84 (47.62%), Postives = 52/84 (61.90%), Query Frame = 3
Query:   15 STCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            ST EVYG            + QD  +    ED S  I G I KQRW Y+ +KQL++R+I+A GA+ GL FT+ RPFNW+GPR+D
Sbjct:  434 STSEVYG------------MCQDKHF---DEDRSNLIVGPINKQRWIYSVSKQLLDRVIWAYGAK-GLNFTLFRPFNWMGPRLD 501          
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_SALTY (Bifunctional polymyxin resistance protein arnA OS=Salmonella typhimurium GN=arnA PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.084e-12
Identity = 38/85 (44.71%), Postives = 49/85 (57.65%), Query Frame = 3
Query:   15 STCEVYGK-TIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            ST EVYG  T  SF                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D
Sbjct:  431 STSEVYGMCTDASF----------------DEDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLD 499          
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_SALTI (Bifunctional polymyxin resistance protein arnA OS=Salmonella typhi GN=arnA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.084e-12
Identity = 38/85 (44.71%), Postives = 49/85 (57.65%), Query Frame = 3
Query:   15 STCEVYGK-TIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            ST EVYG  T  SF                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D
Sbjct:  431 STSEVYGMCTDASF----------------DEDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLD 499          
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_SALSV (Bifunctional polymyxin resistance protein arnA OS=Salmonella schwarzengrund (strain CVM19633) GN=arnA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.084e-12
Identity = 38/85 (44.71%), Postives = 49/85 (57.65%), Query Frame = 3
Query:   15 STCEVYGK-TIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            ST EVYG  T  SF                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D
Sbjct:  431 STSEVYGMCTDASF----------------DEDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLD 499          
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_SALPK (Bifunctional polymyxin resistance protein arnA OS=Salmonella paratyphi A (strain AKU_12601) GN=arnA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.084e-12
Identity = 38/85 (44.71%), Postives = 49/85 (57.65%), Query Frame = 3
Query:   15 STCEVYGK-TIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            ST EVYG  T  SF                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D
Sbjct:  431 STSEVYGMCTDASF----------------DEDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLD 499          
The following BLAST results are available for this feature:
BLAST of CF504016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
ARNA_ECO5E1.808e-1240.91Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECO571.808e-1240.91Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECO551.808e-1240.91Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECO451.808e-1240.91Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECO241.808e-1240.91Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEPF2.361e-1247.62Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALTY3.084e-1244.71Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALTI3.084e-1244.71Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALSV3.084e-1244.71Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALPK3.084e-1244.71Bifunctional polymyxin resistance protein arnA OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-504 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504016 ID=CF504016; Name=CF504016; organism=Citrus sinensis; type=EST; length=323bp
GTTTGATTCACTTCTCTACTTGTGAAGTATATGGAAAGACCATTGGAAGC
TTTCTTCCTAAAGATAGTCCTCTTCGGCAGGATCCTGCTTACTATGTTCT
TAAAGAAGATGCCTCCCCCTGCATTTTTGGCTCTATTGAGAAGCAGAGGT
GGTCGTATGCATGTGCAAAGCAATTGATTGAAAGGCTGATTTATGCTGAG
GGTGCAGAGAATGGTCTTGAGTTCACCATTGTGAGGCCCTTTAACTGGAT
TGGTCCGAGGATGGACTTCATTCCCGGCATTGATGGTCCAAGTGAGGGTG
TTCCAAGGGTTCTGGCATGCTTT
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