CF504019

Overview
NameCF504019
Unique NameCF504019
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504019 vs. ExPASy Swiss-Prot
Match: UB2G2_PONAB (Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.575e-25
Identity = 57/152 (37.50%), Postives = 87/152 (57.24%), Query Frame = 3
Query:  120 ASKRILKELKDLQKDPPTSCSAGPVAED-MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTAR 533
            A KR++ E K L  +PP    AGP+ E+  F W+A IMGP D+ +  GVF   + FP DYP  PPK+ F  ++FHPNI  +G +C+ IL              E+WSP  ++ K+LLS+ S+L +PN +     + + M++ DR ++   A+
Sbjct:    5 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAK 156          
BLAST of CF504019 vs. ExPASy Swiss-Prot
Match: UB2G2_MOUSE (Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus GN=Ube2g2 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.575e-25
Identity = 57/152 (37.50%), Postives = 87/152 (57.24%), Query Frame = 3
Query:  120 ASKRILKELKDLQKDPPTSCSAGPVAED-MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTAR 533
            A KR++ E K L  +PP    AGP+ E+  F W+A IMGP D+ +  GVF   + FP DYP  PPK+ F  ++FHPNI  +G +C+ IL              E+WSP  ++ K+LLS+ S+L +PN +     + + M++ DR ++   A+
Sbjct:    5 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAK 156          
BLAST of CF504019 vs. ExPASy Swiss-Prot
Match: UB2G2_HUMAN (Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens GN=UBE2G2 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.575e-25
Identity = 57/152 (37.50%), Postives = 87/152 (57.24%), Query Frame = 3
Query:  120 ASKRILKELKDLQKDPPTSCSAGPVAED-MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTAR 533
            A KR++ E K L  +PP    AGP+ E+  F W+A IMGP D+ +  GVF   + FP DYP  PPK+ F  ++FHPNI  +G +C+ IL              E+WSP  ++ K+LLS+ S+L +PN +     + + M++ DR ++   A+
Sbjct:    5 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAK 156          
BLAST of CF504019 vs. ExPASy Swiss-Prot
Match: UBE2T_HUMAN (Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens GN=UBE2T PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.057e-25
Identity = 56/143 (39.16%), Postives = 87/143 (60.84%), Query Frame = 3
Query:  123 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSW 539
            + R+ +EL  L  +PP   +     + M   +A I+G  ++PY  GVF + +  P  YPF+PP++ F T ++HPNI+S G ICLD+L    K  W P+L I+ VL SI  L+++PNPDDPL+ +I+  +K ++  +   AR W
Sbjct:    4 ASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQW 146          
BLAST of CF504019 vs. ExPASy Swiss-Prot
Match: UB2L3_PONAB (Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii GN=UBE2L3 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.057e-25
Identity = 54/135 (40.00%), Postives = 86/135 (63.70%), Query Frame = 3
Query:  120 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKY 518
            AS+R++KEL++++K    +     V E ++  WQ  I+ P + PY  G F + I+FP +YPFKPPK+ F+TK++HPNI+  G +CL ++  E W PA    +V+ S+ +L+ DP P+ PL  ++A  Y  DR K+
Sbjct:    3 ASRRLMKELEEIRKCGMKNFRNIRVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKF 136          
BLAST of CF504019 vs. ExPASy Swiss-Prot
Match: UBE2T_MOUSE (Ubiquitin-conjugating enzyme E2 T OS=Mus musculus GN=Ube2t PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.686e-25
Identity = 57/143 (39.86%), Postives = 87/143 (60.84%), Query Frame = 3
Query:  123 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSW 539
            + R+ KEL  L  +PP   +     + +   +A I+G  ++PY  GVF + +  P  YPF+PP+V F T ++HPNI+S+G ICLDIL    K  W P+L I+ VL SI  L+ +PNPDDPL+ +I+  +K ++  +   A+ W
Sbjct:    4 ASRLKKELHMLAIEPPPGITCWQEKDQVADLRAQILGGANTPYEKGVFTLEVIIPERYPFEPPQVRFLTPIYHPNIDSSGRICLDILKLPPKGAWRPSLNIATVLTSIQLLMAEPNPDDPLMADISSEFKYNKIAFLKKAKQW 146          
BLAST of CF504019 vs. ExPASy Swiss-Prot
Match: UE2NL_HUMAN (Putative ubiquitin-conjugating enzyme E2 N-like OS=Homo sapiens GN=UBE2NL PE=5 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.581e-25
Identity = 59/138 (42.75%), Postives = 81/138 (58.70%), Query Frame = 3
Query:  129 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPP-DSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSW 539
            RI+KE + L  +P     A P   +  ++   I G   DSP+ GG F   +    +YP   PKV F TK++HPN++    I LDILK++WSPAL I  VLLSI +LL  PNPDDPL  ++   +KT+  +   TAR+W
Sbjct:    7 RIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGESKDSPFEGGTFKRELLLAEEYPMAAPKVRFMTKIYHPNVDKLERISLDILKDKWSPALQIRTVLLSIQALLNAPNPDDPLANDVVEQWKTNEAQAIETARAW 144          
BLAST of CF504019 vs. ExPASy Swiss-Prot
Match: UBE2C_SPISO (Ubiquitin-conjugating enzyme E2 C OS=Spisula solidissima GN=UBE2C PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.581e-25
Identity = 59/157 (37.58%), Postives = 88/157 (56.05%), Query Frame = 3
Query:   75 KAKSGGSAASQVETMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMY-------KTDRNKYET 524
            K +      S+     SKR+ +EL+ L        +A P  +++F W AT+ GP D+ Y    + +T+ FP DYP+KPP V F T  +HPN++ +G+ICLDILKE W+ +  +  +LLS+ SLL +PN   PL  + A M+       K    KY+T
Sbjct:   16 KERPRDMTTSKERHSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMWSNQTEYKKVLHEKYKT 172          
BLAST of CF504019 vs. ExPASy Swiss-Prot
Match: UBC37_ARATH (Probable ubiquitin carrier protein E2 37 OS=Arabidopsis thaliana GN=UBC37 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.581e-25
Identity = 66/150 (44.00%), Postives = 89/150 (59.33%), Query Frame = 3
Query:  123 SKRILKELKDLQKDPPTSCS------AGPVAEDMFHWQ---ATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTAR 533
            S R+ KELK L  DPP   S      A   + D   +    A I GP D+ YA G+F + I  P  YPF+PP V+F T ++HPNI+++G ICLDIL    K  W P+L IS VL S+  LL++PNPDD L+ E++  YK +R  ++  AR
Sbjct:    8 SLRMQKELKLLLSDPPHGASFPHLSSAANGSGDFSTFSTIDAQIEGPEDTVYANGIFNLKIQIPERYPFQPPIVSFATPIYHPNIDNSGRICLDILNLPPKGAWQPSLNISTVLTSMRLLLSEPNPDDGLMCEVSREYKYNRQTFDYKAR 157          
BLAST of CF504019 vs. ExPASy Swiss-Prot
Match: UBC11_SCHPO (Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosaccharomyces pombe GN=ubc11 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 5.984e-25
Identity = 55/159 (34.59%), Postives = 95/159 (59.75%), Query Frame = 3
Query:   51 LPHESTYCKAKSGGSAASQVETMA-SKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYE 521
            + +++ +  +K+  SA   V+  + +KR+  EL  L        SA P ++ ++ HW  TI GP D+ Y G  F +++ FP +YP+ PP + F + ++HPN++ +G+ICLDILK++WS    +  +LLS+ SLL +PN   PL  + A ++  D  +Y+
Sbjct:    5 MQNQNPHTNSKNSSSAGMAVDGHSVTKRLRSELMSLMMSNTPGISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNVDMSGNICLDILKDKWSAVYNVQTILLSLQSLLGEPNNASPLNAQAAELWSKDPIEYK 163          
The following BLAST results are available for this feature:
BLAST of CF504019 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UB2G2_PONAB1.575e-2537.50Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii... [more]
UB2G2_MOUSE1.575e-2537.50Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus... [more]
UB2G2_HUMAN1.575e-2537.50Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens... [more]
UBE2T_HUMAN2.057e-2539.16Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens ... [more]
UB2L3_PONAB2.057e-2540.00Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii... [more]
UBE2T_MOUSE2.686e-2539.86Ubiquitin-conjugating enzyme E2 T OS=Mus musculus ... [more]
UE2NL_HUMAN4.581e-2542.75Putative ubiquitin-conjugating enzyme E2 N-like OS... [more]
UBE2C_SPISO4.581e-2537.58Ubiquitin-conjugating enzyme E2 C OS=Spisula solid... [more]
UBC37_ARATH4.581e-2544.00Probable ubiquitin carrier protein E2 37 OS=Arabid... [more]
UBC11_SCHPO5.984e-2534.59Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosa... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-507 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504019 ID=CF504019; Name=CF504019; organism=Citrus sinensis; type=EST; length=541bp
ATTTTTTTAAGTATCTCAGTTTTTGTTTCTAATTTTCCCGATCTCCCTGT
CTCCCTCACGAATCCACATATTGCAAGGCCAAATCAGGAGGATCTGCTGC
TTCTCAGGTTGAAACTATGGCGTCGAAACGGATCTTGAAGGAGCTCAAAG
ATTTGCAGAAGGATCCTCCTACATCATGCAGTGCCGGTCCTGTTGCTGAA
GACATGTTTCATTGGCAGGCGACAATCATGGGTCCTCCAGATAGTCCGTA
TGCTGGGGGTGTTTTTCTAGTTACCATCCATTTTCCCCCAGACTATCCAT
TCAAGCCTCCCAAGGTAGCATTCAGGACAAAGGTATTTCATCCTAACATA
AATAGCAATGGGAGCATTTGCCTTGACATCTTGAAGGAACAATGGAGTCC
TGCTCTTACCATTTCCAAGGTGTTGCTATCAATCTGTTCATTATTGACGG
ATCCAAATCCCGATGATCCGTTGGTACCAGAAATTGCTCACATGTACAAG
ACCGACAGGAACAAGTACGAGACAACTGCAAGGAGCTGGAC
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