CF504019

Overview
NameCF504019
Unique NameCF504019
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2111 contig Csv1_Contig2111:78..618. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504019 vs. ExPASy Swiss-Prot
Match: UBC2_NECHA (Ubiquitin-conjugating enzyme E2 2 OS=Nectria haematococca GN=UBC2 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.737e-32
Identity = 62/149 (41.61%), Postives = 94/149 (63.09%), Query Frame = 3
Query:  108 VETMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKY-----ETTARSW 539
            + T A +R++++ K +Q DPP   SA PV +++  W A I+GP D+P+  G F + + F   YP KPP+V F +++FHPN+ + G +CLDIL+ +WSP   ++ VL SI SLL DPN   P   E +++YK +R +Y     ET  +SW
Sbjct:    1 MSTAARRRLMRDFKRMQTDPPAGVSASPVPDNVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISEMFHPNVYATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRKEYTKRVRETVEKSW 149          
BLAST of CF504019 vs. ExPASy Swiss-Prot
Match: UBE2N_MACFA (Ubiquitin-conjugating enzyme E2 N OS=Macaca fascicularis GN=UBE2N PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.268e-32
Identity = 64/138 (46.38%), Postives = 90/138 (65.22%), Query Frame = 3
Query:  126 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSW 539
            +RI+KE + L  +P     A P   +  ++   I GP DSP+ GG F + +  P +YP   PKV F TK++HPN++ +G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +KT+  +   TAR+W
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKSGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAW 143          
BLAST of CF504019 vs. ExPASy Swiss-Prot
Match: UBC2_NEUCR (Ubiquitin-conjugating enzyme E2 2 OS=Neurospora crassa GN=mus-8 PE=3 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 2.963e-32
Identity = 62/149 (41.61%), Postives = 93/149 (62.42%), Query Frame = 3
Query:  108 VETMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKY-----ETTARSW 539
            + T A +R++++ K +Q DPP   SA PV +++  W A I+GP D+P+  G F + +HF   YP KPP V F +++FHPN+ + G +CLDIL+ +WSP   ++ VL SI SLL DPN       E +++YK +R +Y     ET  +SW
Sbjct:    1 MSTAARRRLMRDFKRMQTDPPAGVSASPVPDNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPSVKFISEMFHPNVYATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSRANVEASNLYKDNRKEYHKRVRETVEKSW 149          
BLAST of CF504019 vs. ExPASy Swiss-Prot
Match: UBC2_CANAL (Ubiquitin-conjugating enzyme E2 2 OS=Candida albicans GN=UBC2 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.963e-32
Identity = 61/149 (40.94%), Postives = 95/149 (63.76%), Query Frame = 3
Query:  108 VETMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKY-----ETTARSW 539
            + T A +R++++ K +Q+DPP+  SA P+ +++  W A I+GP D+P+  G F + + F   YP KPP+V F +++FHPN+ ++G +CLDIL+ +WSP   +S +L S+ SLL DPN   P   E A++YK  R+ Y     ET   SW
Sbjct:    1 MSTPARRRLMRDFKRMQQDPPSGVSASPLPDNVMKWNAVIIGPSDTPFEDGTFRLLLSFDEQYPNKPPQVKFISEMFHPNVYASGELCLDILQNRWSPTYDVSSILTSVQSLLNDPNISSPANVEAANLYKDHRSLYVKRVRETVENSW 149          
BLAST of CF504019 vs. ExPASy Swiss-Prot
Match: UBE2A_MOUSE (Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 3.869e-32
Identity = 60/138 (43.48%), Postives = 90/138 (65.22%), Query Frame = 3
Query:  108 VETMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYE 521
            + T A +R++++ K LQ+DPP   S  P   ++  W A I GP  +P+  G F +TI F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ ++ +YE
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          
BLAST of CF504019 vs. ExPASy Swiss-Prot
Match: UBE2A_HUMAN (Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens GN=UBE2A PE=2 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 3.869e-32
Identity = 60/138 (43.48%), Postives = 90/138 (65.22%), Query Frame = 3
Query:  108 VETMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYE 521
            + T A +R++++ K LQ+DPP   S  P   ++  W A I GP  +P+  G F +TI F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ ++ +YE
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          
BLAST of CF504019 vs. ExPASy Swiss-Prot
Match: UBC2_YARLI (Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipolytica GN=UBC2 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 3.869e-32
Identity = 59/142 (41.55%), Postives = 91/142 (64.08%), Query Frame = 3
Query:  108 VETMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTAR 533
            + T A +R++++ K +Q+DPP   SA PVA+++  W A I+GP ++P+  G F + + F   YP KPP V F +++FHPN+ S+G +CLDIL+ +WSP   ++ +L S+ SLL DPN   P   E + +YK  R +YE   R
Sbjct:    1 MSTTARRRLMRDFKRMQQDPPQGVSASPVADNVLTWNAVIIGPAETPFEDGTFRMVLQFDEQYPNKPPAVKFVSQMFHPNVYSSGELCLDILQNRWSPTYDVAAILTSVQSLLNDPNTSSPANVEASMLYKDHRQQYEKRVR 142          
BLAST of CF504019 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.054e-32
Identity = 59/138 (42.75%), Postives = 89/138 (64.49%), Query Frame = 3
Query:  108 VETMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYE 521
            + T A +R++++ K LQ+DPP   S  P   ++  W A I GP  +P+  G F + I F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ ++ +YE
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          
BLAST of CF504019 vs. ExPASy Swiss-Prot
Match: UBE2B_RABIT (Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus cuniculus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.054e-32
Identity = 59/138 (42.75%), Postives = 89/138 (64.49%), Query Frame = 3
Query:  108 VETMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYE 521
            + T A +R++++ K LQ+DPP   S  P   ++  W A I GP  +P+  G F + I F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ ++ +YE
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          
BLAST of CF504019 vs. ExPASy Swiss-Prot
Match: UBE2B_MOUSE (Ubiquitin-conjugating enzyme E2 B OS=Mus musculus GN=Ube2b PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.054e-32
Identity = 59/138 (42.75%), Postives = 89/138 (64.49%), Query Frame = 3
Query:  108 VETMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYE 521
            + T A +R++++ K LQ+DPP   S  P   ++  W A I GP  +P+  G F + I F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ ++ +YE
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          
The following BLAST results are available for this feature:
BLAST of CF504019 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBC2_NECHA1.737e-3241.61Ubiquitin-conjugating enzyme E2 2 OS=Nectria haema... [more]
UBE2N_MACFA2.268e-3246.38Ubiquitin-conjugating enzyme E2 N OS=Macaca fascic... [more]
UBC2_NEUCR2.963e-3241.61Ubiquitin-conjugating enzyme E2 2 OS=Neurospora cr... [more]
UBC2_CANAL2.963e-3240.94Ubiquitin-conjugating enzyme E2 2 OS=Candida albic... [more]
UBE2A_MOUSE3.869e-3243.48Ubiquitin-conjugating enzyme E2 A OS=Mus musculus ... [more]
UBE2A_HUMAN3.869e-3243.48Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens ... [more]
UBC2_YARLI3.869e-3241.55Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipo... [more]
UBE2B_RAT5.054e-3242.75Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg... [more]
UBE2B_RABIT5.054e-3242.75Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus c... [more]
UBE2B_MOUSE5.054e-3242.75Ubiquitin-conjugating enzyme E2 B OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-507 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504019 ID=CF504019; Name=CF504019; organism=Citrus sinensis; type=EST; length=541bp
ATTTTTTTAAGTATCTCAGTTTTTGTTTCTAATTTTCCCGATCTCCCTGT
CTCCCTCACGAATCCACATATTGCAAGGCCAAATCAGGAGGATCTGCTGC
TTCTCAGGTTGAAACTATGGCGTCGAAACGGATCTTGAAGGAGCTCAAAG
ATTTGCAGAAGGATCCTCCTACATCATGCAGTGCCGGTCCTGTTGCTGAA
GACATGTTTCATTGGCAGGCGACAATCATGGGTCCTCCAGATAGTCCGTA
TGCTGGGGGTGTTTTTCTAGTTACCATCCATTTTCCCCCAGACTATCCAT
TCAAGCCTCCCAAGGTAGCATTCAGGACAAAGGTATTTCATCCTAACATA
AATAGCAATGGGAGCATTTGCCTTGACATCTTGAAGGAACAATGGAGTCC
TGCTCTTACCATTTCCAAGGTGTTGCTATCAATCTGTTCATTATTGACGG
ATCCAAATCCCGATGATCCGTTGGTACCAGAAATTGCTCACATGTACAAG
ACCGACAGGAACAAGTACGAGACAACTGCAAGGAGCTGGAC
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