CF504019

Overview
NameCF504019
Unique NameCF504019
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504019 vs. ExPASy Swiss-Prot
Match: UBE2N_DROME (Ubiquitin-conjugating enzyme E2 N OS=Drosophila melanogaster GN=ben PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.920e-31
Identity = 62/138 (44.93%), Postives = 90/138 (65.22%), Query Frame = 3
Query:  126 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSW 539
            +RI+KE + L ++P    +A P   +  ++   + GP DSP+ GGVF + +  P DYP   PKV F TK++HPNI+  G ICLD+LK++WSPAL I  +LLSI +LL+ PNPDDPL  ++A ++K +  +    AR W
Sbjct:    6 RRIIKETQRLMQEPVPGINAIPDENNARYFHVIVTGPNDSPFEGGVFKLELFLPEDYPMSAPKVRFITKIYHPNIDRLGRICLDVLKDKWSPALQIRTILLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAREW 143          
BLAST of CF504019 vs. ExPASy Swiss-Prot
Match: UBC1_CAEEL (Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans GN=ubc-1 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.920e-31
Identity = 57/136 (41.91%), Postives = 91/136 (66.91%), Query Frame = 3
Query:  114 TMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYE 521
            T + +R++++ K LQ+DPP   S  P  +++  W+A I GP ++P+  G F +++ F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   ++ +L SI SLL +PNP+ P     A +Y+ +R +YE
Sbjct:    3 TPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYE 138          
BLAST of CF504019 vs. ExPASy Swiss-Prot
Match: UBC13_YEAST (Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyces cerevisiae GN=UBC13 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.508e-31
Identity = 64/138 (46.38%), Postives = 88/138 (63.77%), Query Frame = 3
Query:  126 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSW 539
            KRI+KE + L  DP    +A P  +++ ++Q TI GP  SPY  G+F + ++ P DYP + PKV F TK++HPNI+  G ICLD+LK  WSPAL I  VLLSI +LL  PNP+DPL  ++A  +  +    +  AR W
Sbjct:    6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREW 143          
BLAST of CF504019 vs. ExPASy Swiss-Prot
Match: UBC2_USTMA (Ubiquitin-conjugating enzyme E2 2 OS=Ustilago maydis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.276e-31
Identity = 61/149 (40.94%), Postives = 89/149 (59.73%), Query Frame = 3
Query:  108 VETMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKY-----ETTARSW 539
            + T + KR++++ K L  DPP   S  P A+++  W A I GP D+P+  G F + + F   YP KPP V F +K+FHPN+ +NG +CLDIL+ +WSP   ++ +L SI SLL DPNP+ P   E A +Y+ +  +Y      T   SW
Sbjct:    1 MSTPSKKRLIRDFKRLSTDPPGGISGAPCADNLMIWNAVIFGPADTPFEDGTFKLVLTFDESYPNKPPTVKFLSKMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLHDPNPNSPANAEAASLYRENMKEYVRRVKATVEASW 149          
BLAST of CF504019 vs. ExPASy Swiss-Prot
Match: UBC2_YEAST (Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces cerevisiae GN=RAD6 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.278e-31
Identity = 59/149 (39.60%), Postives = 94/149 (63.09%), Query Frame = 3
Query:  108 VETMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKY-----ETTARSW 539
            + T A +R++++ K +++D P   SA P+ +++  W A I+GP D+PY  G F + + F  +YP KPP V F +++FHPN+ +NG ICLDIL+ +W+P   ++ +L SI SL  DPNP  P   E A ++K  +++Y     ET  +SW
Sbjct:    1 MSTPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSW 149          
BLAST of CF504019 vs. ExPASy Swiss-Prot
Match: UBC2_DICDI (Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium discoideum GN=ubc2 PE=3 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 4.278e-31
Identity = 62/149 (41.61%), Postives = 92/149 (61.74%), Query Frame = 3
Query:  108 VETMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKY-----ETTARSW 539
            + T A +R++++ K LQ DPP   S  P+  ++  WQA I GP DS + G  F +++ F  +YP   P V F +K+FHPN+ ++GSICLDIL+ QWSP   I+ +L SI SLL DPNP+ P   E A +++ ++ +Y     E   +SW
Sbjct:    1 MSTAARRRLMRDFKRLQSDPPAGISGAPLENNILMWQAVIFGPDDSIWEGATFKLSLQFSEEYPNDAPTVKFLSKMFHPNVYADGSICLDILQNQWSPIYDIAAILTSIQSLLCDPNPNSPANSESARLFRENKREYNRKVKEIVEQSW 149          
BLAST of CF504019 vs. ExPASy Swiss-Prot
Match: UBC2_ASHGO (Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossypii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.278e-31
Identity = 59/149 (39.60%), Postives = 94/149 (63.09%), Query Frame = 3
Query:  108 VETMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKY-----ETTARSW 539
            + T A +R++++ K +++D P   SA P+ +++  W A I+GP D+PY  G F + + F  +YP KPP V F +++FHPN+ +NG ICLDIL+ +W+P   ++ +L SI SL  DPNP  P   E A ++K  +++Y     ET  +SW
Sbjct:    1 MSTPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSW 149          
BLAST of CF504019 vs. ExPASy Swiss-Prot
Match: UBC2_SCHPO (Ubiquitin-conjugating enzyme E2 2 OS=Schizosaccharomyces pombe GN=rhp6 PE=1 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 9.531e-31
Identity = 59/149 (39.60%), Postives = 93/149 (62.42%), Query Frame = 3
Query:  108 VETMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKY-----ETTARSW 539
            + T A +R++++ K +Q+DPP   SA PV++++  W A I+GP D+P+  G F + + F   YP KPP V F + +FHPN+ +NG +CLDIL+ +WSP   ++ +L SI SLL DPN   P   E A +++ ++ +Y     +T   SW
Sbjct:    1 MSTTARRRLMRDFKRMQQDPPAGVSASPVSDNVMLWNAVIIGPADTPFEDGTFKLVLSFDEQYPNKPPLVKFVSTMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNNASPANAEAAQLHRENKKEYVRRVRKTVEDSW 149          
BLAST of CF504019 vs. ExPASy Swiss-Prot
Match: UBC13_SCHPO (Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccharomyces pombe GN=ubc13 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 9.531e-31
Identity = 61/138 (44.20%), Postives = 88/138 (63.77%), Query Frame = 3
Query:  126 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSW 539
            KRI+KE++ L +DPP    A P  +++ +++ T+ GP  S Y GG F + +  P +YP  PP V F TK++HPN++  G ICL  LK+ WSPAL I  VLLSI +L+  PNPDDPL  ++A ++K +  +    AR W
Sbjct:    5 KRIIKEIETLTRDPPPGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMMPPNVRFLTKIYHPNVDKLGRICLSTLKKDWSPALQIRTVLLSIQALMGAPNPDDPLDNDVAKIWKENEPQAIANAREW 142          
BLAST of CF504019 vs. ExPASy Swiss-Prot
Match: UBC2_KLULA (Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces lactis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.245e-30
Identity = 58/149 (38.93%), Postives = 94/149 (63.09%), Query Frame = 3
Query:  108 VETMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKY-----ETTARSW 539
            + T A +R++++ K +++D P   SA P+ +++  W A I+GP D+PY  G F + + F  +YP KPP V F +++FHPN+ +NG ICLDIL+ +W+P   ++ +L SI SL  DPNP  P   E A +++  +++Y     ET  +SW
Sbjct:    1 MSTPARRRLMRDFKRMKEDSPPGVSASPLPDNVMIWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFQDHKSQYVKRVKETVEKSW 149          
The following BLAST results are available for this feature:
BLAST of CF504019 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBE2N_DROME1.920e-3144.93Ubiquitin-conjugating enzyme E2 N OS=Drosophila me... [more]
UBC1_CAEEL1.920e-3141.91Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditi... [more]
UBC13_YEAST2.508e-3146.38Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyce... [more]
UBC2_USTMA3.276e-3140.94Ubiquitin-conjugating enzyme E2 2 OS=Ustilago mayd... [more]
UBC2_YEAST4.278e-3139.60Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces... [more]
UBC2_DICDI4.278e-3141.61Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium... [more]
UBC2_ASHGO4.278e-3139.60Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossyp... [more]
UBC2_SCHPO9.531e-3139.60Ubiquitin-conjugating enzyme E2 2 OS=Schizosacchar... [more]
UBC13_SCHPO9.531e-3144.20Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccha... [more]
UBC2_KLULA1.245e-3038.93Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-507 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504019 ID=CF504019; Name=CF504019; organism=Citrus sinensis; type=EST; length=541bp
ATTTTTTTAAGTATCTCAGTTTTTGTTTCTAATTTTCCCGATCTCCCTGT
CTCCCTCACGAATCCACATATTGCAAGGCCAAATCAGGAGGATCTGCTGC
TTCTCAGGTTGAAACTATGGCGTCGAAACGGATCTTGAAGGAGCTCAAAG
ATTTGCAGAAGGATCCTCCTACATCATGCAGTGCCGGTCCTGTTGCTGAA
GACATGTTTCATTGGCAGGCGACAATCATGGGTCCTCCAGATAGTCCGTA
TGCTGGGGGTGTTTTTCTAGTTACCATCCATTTTCCCCCAGACTATCCAT
TCAAGCCTCCCAAGGTAGCATTCAGGACAAAGGTATTTCATCCTAACATA
AATAGCAATGGGAGCATTTGCCTTGACATCTTGAAGGAACAATGGAGTCC
TGCTCTTACCATTTCCAAGGTGTTGCTATCAATCTGTTCATTATTGACGG
ATCCAAATCCCGATGATCCGTTGGTACCAGAAATTGCTCACATGTACAAG
ACCGACAGGAACAAGTACGAGACAACTGCAAGGAGCTGGAC
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