CF504022

Overview
NameCF504022
Unique NameCF504022
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length309
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504022 vs. ExPASy Swiss-Prot
Match: PRDX3_HUMAN (Thioredoxin-dependent peroxide reductase, mitochondrial OS=Homo sapiens GN=PRDX3 PE=1 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 4.204e-22
Identity = 53/102 (51.96%), Postives = 67/102 (65.69%), Query Frame = 1
Query:    1 GSRSRKSFVVKASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQT 306
            GS   K F   +S   P +  + AP F   AV + EF ++ L D+ GK Y++LFFYPLDFTFVCPTEI AFSD+  EF  +N E++ VS DS FSHLAW+ T
Sbjct:   47 GSSQAKLFSTSSSCHAPAVTQH-APYFKGTAVVNGEFKDLSLDDFKGK-YLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHLAWINT 146          
BLAST of CF504022 vs. ExPASy Swiss-Prot
Match: TDX2_BRUMA (Thioredoxin peroxidase 2 OS=Brugia malayi GN=tsa-2 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 1.223e-21
Identity = 48/84 (57.14%), Postives = 60/84 (71.43%), Query Frame = 1
Query:   58 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTD 309
            +G  AP+F   AV + +F  + L  + GK YV+L FYPLDFTFVCPTEI AFSDR  EF++L+  ++  STDS FSHLAWV TD
Sbjct:   10 IGQPAPNFKTTAVVNGDFKEISLGQFKGK-YVVLLFYPLDFTFVCPTEIIAFSDRIAEFKQLDVAVMACSTDSHFSHLAWVNTD 92          
BLAST of CF504022 vs. ExPASy Swiss-Prot
Match: TDX_ONCMY (Peroxiredoxin OS=Oncorhynchus mykiss PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.598e-21
Identity = 49/84 (58.33%), Postives = 60/84 (71.43%), Query Frame = 1
Query:   58 VGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQT 306
            +G+ AP F A+AV  D +F ++ +SDY GK YV+ FFYPLDFTFVCPTEI AFSD   EF K+  E++G S DS F HLAW  T
Sbjct:    8 IGHLAPGFTAKAVMPDGQFKDISMSDYRGK-YVVFFFYPLDFTFVCPTEIIAFSDAAEEFRKIGCEVIGASVDSHFCHLAWTNT 90          
BLAST of CF504022 vs. ExPASy Swiss-Prot
Match: PRDX4_HUMAN (Peroxiredoxin-4 OS=Homo sapiens GN=PRDX4 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.598e-21
Identity = 47/83 (56.63%), Postives = 58/83 (69.88%), Query Frame = 1
Query:   58 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQT 306
            +   AP +   AV D EF  +KL+DY GK Y++ FFYPLDFTFVCPTEI AF DR  EF  +NTE++  S DS F+HLAW+ T
Sbjct:   81 ISKPAPYWEGTAVIDGEFKELKLTDYRGK-YLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINT 162          
BLAST of CF504022 vs. ExPASy Swiss-Prot
Match: PRDX3_RAT (Thioredoxin-dependent peroxide reductase, mitochondrial OS=Rattus norvegicus GN=Prdx3 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 1.598e-21
Identity = 49/85 (57.65%), Postives = 59/85 (69.41%), Query Frame = 1
Query:   52 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQT 306
            P V   AP F   AV + EF  + L D+ GK Y++LFFYPLDFTFVCPTEI AFSD+  EF  +N E++ VS DS FSHLAW+ T
Sbjct:   64 PAVTQHAPHFKGTAVVNGEFKELSLDDFKGK-YLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHLAWINT 147          
BLAST of CF504022 vs. ExPASy Swiss-Prot
Match: PRDX3_BOVIN (Thioredoxin-dependent peroxide reductase, mitochondrial OS=Bos taurus GN=PRDX3 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 1.598e-21
Identity = 53/102 (51.96%), Postives = 64/102 (62.75%), Query Frame = 1
Query:    1 GSRSRKSFVVKASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQT 306
            GS   K     +S    P V   AP F   AV   EF  + L D+ GK Y++LFFYPLDFTFVCPTEI AFSD+ +EF  +N E++ VS DS FSHLAW+ T
Sbjct:   47 GSDQAKFAFSTSSSYHAPAVTQHAPYFKGTAVVSGEFKEISLDDFKGK-YLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINT 147          
BLAST of CF504022 vs. ExPASy Swiss-Prot
Match: PRDX3_MOUSE (Thioredoxin-dependent peroxide reductase, mitochondrial OS=Mus musculus GN=Prdx3 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.725e-21
Identity = 49/85 (57.65%), Postives = 59/85 (69.41%), Query Frame = 1
Query:   52 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQT 306
            P V   AP F   AV + EF  + L D+ GK Y++LFFYPLDFTFVCPTEI AFSD+  EF  +N E++ VS DS FSHLAW+ T
Sbjct:   64 PAVTQHAPYFKGTAVVNGEFKELSLDDFKGK-YLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHLAWINT 147          
BLAST of CF504022 vs. ExPASy Swiss-Prot
Match: PRDX4_RAT (Peroxiredoxin-4 OS=Rattus norvegicus GN=Prdx4 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.648e-21
Identity = 46/83 (55.42%), Postives = 59/83 (71.08%), Query Frame = 1
Query:   58 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQT 306
            +   AP +   AV + EF  +KL+DY GK Y++ FFYPLDFTFVCPTEI AF DR  EF+ +NTE++  S DS F+HLAW+ T
Sbjct:   83 ISKPAPYWEGTAVINGEFKELKLTDYRGK-YLVFFFYPLDFTFVCPTEIIAFGDRIEEFKSINTEVVACSVDSQFTHLAWINT 164          
BLAST of CF504022 vs. ExPASy Swiss-Prot
Match: PRDX4_MOUSE (Peroxiredoxin-4 OS=Mus musculus GN=Prdx4 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.648e-21
Identity = 46/83 (55.42%), Postives = 59/83 (71.08%), Query Frame = 1
Query:   58 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQT 306
            +   AP +   AV + EF  +KL+DY GK Y++ FFYPLDFTFVCPTEI AF DR  EF+ +NTE++  S DS F+HLAW+ T
Sbjct:   84 ISKPAPYWEGTAVINGEFKELKLTDYRGK-YLVFFFYPLDFTFVCPTEIIAFGDRIEEFKSINTEVVACSVDSQFTHLAWINT 165          
BLAST of CF504022 vs. ExPASy Swiss-Prot
Match: PRDX4_BOVIN (Peroxiredoxin-4 OS=Bos taurus GN=PRDX4 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.071e-21
Identity = 46/83 (55.42%), Postives = 58/83 (69.88%), Query Frame = 1
Query:   58 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQT 306
            +   AP +   AV + EF  +KL+DY GK Y++ FFYPLDFTFVCPTEI AF DR  EF  +NTE++  S DS F+HLAW+ T
Sbjct:   84 ISKPAPYWEGTAVINGEFKELKLTDYRGK-YLVFFFYPLDFTFVCPTEIIAFGDRIDEFRSINTEVVACSVDSQFTHLAWINT 165          
The following BLAST results are available for this feature:
BLAST of CF504022 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
PRDX3_HUMAN4.204e-2251.96Thioredoxin-dependent peroxide reductase, mitochon... [more]
TDX2_BRUMA1.223e-2157.14Thioredoxin peroxidase 2 OS=Brugia malayi GN=tsa-2... [more]
TDX_ONCMY1.598e-2158.33Peroxiredoxin OS=Oncorhynchus mykiss PE=2 SV=1[more]
PRDX4_HUMAN1.598e-2156.63Peroxiredoxin-4 OS=Homo sapiens GN=PRDX4 PE=1 SV=1[more]
PRDX3_RAT1.598e-2157.65Thioredoxin-dependent peroxide reductase, mitochon... [more]
PRDX3_BOVIN1.598e-2151.96Thioredoxin-dependent peroxide reductase, mitochon... [more]
PRDX3_MOUSE2.725e-2157.65Thioredoxin-dependent peroxide reductase, mitochon... [more]
PRDX4_RAT4.648e-2155.42Peroxiredoxin-4 OS=Rattus norvegicus GN=Prdx4 PE=2... [more]
PRDX4_MOUSE4.648e-2155.42Peroxiredoxin-4 OS=Mus musculus GN=Prdx4 PE=1 SV=1[more]
PRDX4_BOVIN6.071e-2155.42Peroxiredoxin-4 OS=Bos taurus GN=PRDX4 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-510 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504022 ID=CF504022; Name=CF504022; organism=Citrus sinensis; type=EST; length=309bp
GGGTCCCGTTCTCGCAAGTCCTTCGTTGTCAAAGCATCCGTTGAAATACC
ACCATTGGTGGGCAACACGGCACCTGATTTTGCTGCAGAGGCTGTTTTCG
ATCAAGAGTTCATCAATGTCAAGCTTTCGGATTACATTGGGAAGAAATAT
GTGATTCTCTTTTTCTACCCGTTGGACTTCACATTTGTTTGCCCCACAGA
AATCACTGCTTTCAGCGACCGATATACTGAATTTGAGAAGCTAAACACAG
AGATATTGGGTGTCTCAACCGACAGTGTGTTTTCACACTTGGCATGGGTC
CAAACAGAC
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