CF504023

Overview
NameCF504023
Unique NameCF504023
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length428
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF504023 vs. ExPASy Swiss-Prot
Match: LAX3_MEDTR (Auxin transporter-like protein 3 OS=Medicago truncatula GN=LAX3 PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 6.750e-63
Identity = 114/136 (83.82%), Postives = 123/136 (90.44%), Query Frame = 2 
Query:   20 EGVTHSGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKSIYLLATLYVFTLTIPSAAAVYWAFGDQLLTHSNAFSLLPRSRWRDVAVILMLIHQFITFGFACTPLYFVWEKVVGMHDTKSICLRALARL 427
            E V HSGP+ LVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFK IYL+ATLYV TLT+PSAAAVYWAFGD LLTHSNA SLLPR+ +RD AVILMLIHQFITFGFACTPLYFVWEK +G+H+TKS+  RAL RL
Sbjct:  215 EDVKHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKMIYLIATLYVMTLTLPSAAAVYWAFGDNLLTHSNALSLLPRTGFRDTAVILMLIHQFITFGFACTPLYFVWEKFLGVHETKSLLKRALVRL 350
[Close]
BLAST of CF504023 vs. ExPASy Swiss-Prot
Match: LAX3_ARATH (Auxin transporter-like protein 3 OS=Arabidopsis thaliana GN=LAX3 PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 1.504e-62
Identity = 112/142 (78.87%), Postives = 130/142 (91.55%), Query Frame = 2 
Query:    2 LVPNRHEGVTHSGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKSIYLLATLYVFTLTIPSAAAVYWAFGDQLLTHSNAFSLLPRSRWRDVAVILMLIHQFITFGFACTPLYFVWEKVVGMHDTKSICLRALARL 427
            L+  + E V HSGP+T+VLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFK+IYLLAT+YV TLT+PSA+AVYWAFGD+LLTHSNA SLLP++ +RD AVILMLIHQFITFGFA TPLYFVWEK++G+H+TKS+  RA+ARL
Sbjct:  214 LLHGQAEDVKHSGPTTMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKAIYLLATIYVLTLTLPSASAVYWAFGDKLLTHSNALSLLPKTGFRDTAVILMLIHQFITFGFASTPLYFVWEKLIGVHETKSMFKRAMARL 355
[Close]
BLAST of CF504023 vs. ExPASy Swiss-Prot
Match: LAX4_ORYSJ (Putative auxin transporter-like protein 4 OS=Oryza sativa subsp. japonica GN=Os11g0169200 PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 2.103e-56
Identity = 102/132 (77.27%), Postives = 115/132 (87.12%), Query Frame = 2 
Query:   35 SGPS-TLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKSIYLLATLYVFTLTIPSAAAVYWAFGDQLLTHSNAFSLLPRSRWRDVAVILMLIHQFITFGFACTPLYFVWEKVVGMHDTKSICLRALARL 427
            +GPS T+VLYFTGATNILYTFGGHAVTVEIMHAMW+P++FK IYL AT YV TLT+PSAAA+YWAFGD LL HSNAF+LLPR+ WRD AV+LMLIHQFITFGFACTPLYFVWEK +G+H    +  RA ARL
Sbjct:  235 AGPSKTMVLYFTGATNILYTFGGHAVTVEIMHAMWRPRRFKMIYLAATAYVLTLTLPSAAAMYWAFGDALLDHSNAFALLPRTPWRDAAVVLMLIHQFITFGFACTPLYFVWEKAIGVHGGAGVLRRAAARL 366
The following BLAST results are available for this feature:
BLAST of CF504023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
LAX3_MEDTR6.750e-6383.82Auxin transporter-like protein 3 OS=Medicago trunc... [more]
LAX3_ARATH1.504e-6278.87Auxin transporter-like protein 3 OS=Arabidopsis th... [more]
LAX4_ORYSJ2.103e-5677.27Putative auxin transporter-like protein 4 OS=Oryza... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-511 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504023 ID=CF504023; Name=CF504023; organism=Citrus sinensis; type=EST; length=428bp
CCTCGTGCCGAATCGGCACGAGGGTGTGACTCACTCAGGCCCAAGCACGT
TGGTTTTGTACTTCACCGGCGCCACCAATATACTCTATACTTTTGGCGGA
CATGCAGTGACTGTAGAAATTATGCATGCTATGTGGAAGCCACAGAAATT
CAAGTCCATATATCTTCTTGCCACCCTGTATGTGTTCACTCTAACCATTC
CTTCTGCTGCCGCTGTTTACTGGGCTTTTGGTGATCAACTCCTCACACAT
TCAAATGCCTTCTCACTGCTTCCACGAAGTCGATGGCGTGATGTTGCAGT
AATCCTAATGCTTATTCACCAGTTCATAACATTTGGCTTTGCATGCACTC
CACTATATTTTGTGTGGGAGAAAGTGGTGGGAATGCATGATACAAAGAGC
ATATGTTTGAGGGCACTTGCCCGGTTGC
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