CF504029

Overview
NameCF504029
Unique NameCF504029
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length445
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504029 vs. ExPASy Swiss-Prot
Match: RS4Y1_PANPA (40S ribosomal protein S4, Y isoform 1 OS=Pan paniscus GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 1.081e-45
Identity = 88/120 (73.33%), Postives = 99/120 (82.50%), Query Frame = 3
Query:   54 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAK 413
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H +  EEAK
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAK 120          
BLAST of CF504029 vs. ExPASy Swiss-Prot
Match: RS4Y1_HUMAN (40S ribosomal protein S4, Y isoform 1 OS=Homo sapiens GN=RPS4Y1 PE=2 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 1.081e-45
Identity = 88/120 (73.33%), Postives = 99/120 (82.50%), Query Frame = 3
Query:   54 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAK 413
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H +  EEAK
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAK 120          
BLAST of CF504029 vs. ExPASy Swiss-Prot
Match: RS4Y1_GORGO (40S ribosomal protein S4, Y isoform 1 OS=Gorilla gorilla gorilla GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 1.081e-45
Identity = 88/120 (73.33%), Postives = 99/120 (82.50%), Query Frame = 3
Query:   54 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAK 413
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H +  EEAK
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAK 120          
BLAST of CF504029 vs. ExPASy Swiss-Prot
Match: RS4Y2_PANTR (40S ribosomal protein S4, Y isoform 2 OS=Pan troglodytes GN=RPS4Y2 PE=2 SV=3)

HSP 1 Score: 181.415 bits (459), Expect = 1.411e-45
Identity = 88/120 (73.33%), Postives = 99/120 (82.50%), Query Frame = 3
Query:   54 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAK 413
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H +  EEAK
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAK 120          
BLAST of CF504029 vs. ExPASy Swiss-Prot
Match: RS4_IXOSC (40S ribosomal protein S4 OS=Ixodes scapularis GN=RpS4 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 2.408e-45
Identity = 90/120 (75.00%), Postives = 98/120 (81.67%), Query Frame = 3
Query:   54 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAK 413
            MARG KKHLKRLNAPK WMLDKLGG FAP+PS+GPHK RE LPLI++LRNRLKYALT  EV  I+ QR + VDGKVRTD  YPAGFMDVV+I KT E FRLLYD KGRF LH +  EEAK
Sbjct:    1 MARGPKKHLKRLNAPKSWMLDKLGGVFAPRPSTGPHKLRESLPLIIMLRNRLKYALTGAEVKKIVKQRLIKVDGKVRTDTNYPAGFMDVVTIEKTGEFFRLLYDVKGRFTLHRITPEEAK 120          
BLAST of CF504029 vs. ExPASy Swiss-Prot
Match: RS4_LYSTE (40S ribosomal protein S4 OS=Lysiphlebus testaceipes GN=RpS4 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.702e-45
Identity = 86/120 (71.67%), Postives = 97/120 (80.83%), Query Frame = 3
Query:   54 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAK 413
            MARG KKHLKRLNAPK WML KLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT  EV  I MQR + VDGKVRTD  YP GFMDVV+I KT E FRL+YD KGRF +H + +EEAK
Sbjct:    1 MARGPKKHLKRLNAPKSWMLGKLGGVYAPRPSTGPHKLRECLPLLIFLRNRLKYALTNCEVTKITMQRLIKVDGKVRTDSNYPLGFMDVVTIEKTGEFFRLIYDVKGRFSIHRISNEEAK 120          

HSP 2 Score: 23.0978 bits (48), Expect = 2.702e-45
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 1
Query:  412 KFKLCKVRSVQ 444
            K+KLCKVR VQ
Sbjct:  120 KYKLCKVRRVQ 130          
BLAST of CF504029 vs. ExPASy Swiss-Prot
Match: RS4C_SCHPO (40S ribosomal protein S4-C OS=Schizosaccharomyces pombe GN=rps4c PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 3.521e-45
Identity = 85/120 (70.83%), Postives = 98/120 (81.67%), Query Frame = 3
Query:   54 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAK 413
            M RG KKHLKR+ AP HW+LDKL G +APKPS GPHK+RECLPLI+ LRNRLKYAL  REV AILMQR + VDGKVRTD T+P GFMDV+S+ KT E+FRL+YD KGRF +H +  EEAK
Sbjct:    1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAK 120          

HSP 2 Score: 21.9422 bits (45), Expect = 3.521e-45
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 1
Query:  412 KFKLCKVRSVQ 444
            K+KLCKV+ VQ
Sbjct:  120 KYKLCKVKRVQ 130          
BLAST of CF504029 vs. ExPASy Swiss-Prot
Match: RS4B_SCHPO (40S ribosomal protein S4-B OS=Schizosaccharomyces pombe GN=rps4b PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 3.521e-45
Identity = 85/120 (70.83%), Postives = 98/120 (81.67%), Query Frame = 3
Query:   54 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAK 413
            M RG KKHLKR+ AP HW+LDKL G +APKPS GPHK+RECLPLI+ LRNRLKYAL  REV AILMQR + VDGKVRTD T+P GFMDV+S+ KT E+FRL+YD KGRF +H +  EEAK
Sbjct:    1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIQVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAK 120          

HSP 2 Score: 21.9422 bits (45), Expect = 3.521e-45
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 1
Query:  412 KFKLCKVRSVQ 444
            K+KLCKV+ VQ
Sbjct:  120 KYKLCKVKRVQ 130          
BLAST of CF504029 vs. ExPASy Swiss-Prot
Match: RS4A_SCHPO (40S ribosomal protein S4-A OS=Schizosaccharomyces pombe GN=rps4a PE=2 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 3.521e-45
Identity = 85/120 (70.83%), Postives = 98/120 (81.67%), Query Frame = 3
Query:   54 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAK 413
            M RG KKHLKR+ AP HW+LDKL G +APKPS GPHK+RECLPLI+ LRNRLKYAL  REV AILMQR + VDGKVRTD T+P GFMDV+S+ KT E+FRL+YD KGRF +H +  EEAK
Sbjct:    1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAK 120          

HSP 2 Score: 21.9422 bits (45), Expect = 3.521e-45
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 1
Query:  412 KFKLCKVRSVQ 444
            K+KLCKV+ VQ
Sbjct:  120 KYKLCKVKRVQ 130          
BLAST of CF504029 vs. ExPASy Swiss-Prot
Match: RS4_YARLI (40S ribosomal protein S4 OS=Yarrowia lipolytica GN=RPS4 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 9.149e-45
Identity = 86/119 (72.27%), Postives = 97/119 (81.51%), Query Frame = 3
Query:   54 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEA 410
            MARG KKHLKRL AP HWMLDKL G +AP+ S+GPHK RE LPL++ LRNRLKYAL  REV AILMQR V VDGKVRTD T+PAGFMDV+ + KT ENFRL+YD KGRF +H + DEEA
Sbjct:    1 MARGPKKHLKRLAAPSHWMLDKLSGTYAPRSSAGPHKLRESLPLVIFLRNRLKYALNGREVNAILMQRLVKVDGKVRTDSTFPAGFMDVIQLEKTGENFRLVYDVKGRFAVHRITDEEA 119          
The following BLAST results are available for this feature:
BLAST of CF504029 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
RS4Y1_PANPA1.081e-4573.3340S ribosomal protein S4, Y isoform 1 OS=Pan panis... [more]
RS4Y1_HUMAN1.081e-4573.3340S ribosomal protein S4, Y isoform 1 OS=Homo sapi... [more]
RS4Y1_GORGO1.081e-4573.3340S ribosomal protein S4, Y isoform 1 OS=Gorilla g... [more]
RS4Y2_PANTR1.411e-4573.3340S ribosomal protein S4, Y isoform 2 OS=Pan trogl... [more]
RS4_IXOSC2.408e-4575.0040S ribosomal protein S4 OS=Ixodes scapularis GN=R... [more]
RS4_LYSTE2.702e-4571.6740S ribosomal protein S4 OS=Lysiphlebus testaceipe... [more]
RS4C_SCHPO3.521e-4570.8340S ribosomal protein S4-C OS=Schizosaccharomyces ... [more]
RS4B_SCHPO3.521e-4570.8340S ribosomal protein S4-B OS=Schizosaccharomyces ... [more]
RS4A_SCHPO3.521e-4570.8340S ribosomal protein S4-A OS=Schizosaccharomyces ... [more]
RS4_YARLI9.149e-4572.2740S ribosomal protein S4 OS=Yarrowia lipolytica GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-517 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_E07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504029 ID=CF504029; Name=CF504029; organism=Citrus sinensis; type=EST; length=445bp
CAAAGAGAACAGACAAGCAGCCGCAGCGAGGCAGCAGCTTCAAACTCACA
AAAATGGCTAGAGGATTGAAGAAGCACTTGAAGAGGCTCAATGCCCCTAA
GCACTGGATGCTTGACAAGCTTGGTGGTGCATTTGCACCTAAGCCATCAT
CTGGTCCCCACAAGTCAAGGGAATGCTTGCCATTGATCCTTGTATTGCGA
AACCGTTTGAAATATGCTCTCACATATCGTGAAGTTATTGCTATTCTGAT
GCAACGACATGTTCTTGTTGATGGGAAGGTTAGGACAGATAAGACCTACC
CTGCTGGTTTCATGGATGTTGTGTCAATTCCCAAGACCAACGAGAACTTC
CGTCTCCTTTATGACACCAAGGGTCGCTTCCGTCTCCATTCCCTCAGAGA
TGAGGAGGCAAAAATTCAAGCTTTGCAAAGTTAGATCAGTCCAGT
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