CF504029

Overview
NameCF504029
Unique NameCF504029
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length445
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504029 vs. ExPASy Swiss-Prot
Match: RS4_CARGR (40S ribosomal protein S4 OS=Carabus granulatus GN=RpS4 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.016e-44
Identity = 85/120 (70.83%), Postives = 98/120 (81.67%), Query Frame = 3
Query:   54 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAK 413
            MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RE LPL++ LRNRLKYALT  EV  I+MQR + VDGKVRTD  YP+GFMDV++I KT E FRL+YD KGRF +H +  EEAK
Sbjct:    1 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRESLPLVIFLRNRLKYALTNSEVTKIVMQRLIKVDGKVRTDPNYPSGFMDVITIEKTGEFFRLIYDVKGRFTIHRITAEEAK 120          

HSP 2 Score: 21.9422 bits (45), Expect = 1.016e-44
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 1
Query:  412 KFKLCKVRSVQ 444
            K+KLCKV+ VQ
Sbjct:  120 KYKLCKVKRVQ 130          
BLAST of CF504029 vs. ExPASy Swiss-Prot
Match: RS4Y1_PONPY (40S ribosomal protein S4, Y isoform 1 OS=Pongo pygmaeus GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 1.195e-44
Identity = 87/120 (72.50%), Postives = 98/120 (81.67%), Query Frame = 3
Query:   54 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAK 413
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +  +  EEAK
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDITYPAGFMDVISIDKTGEHFRLVYDTKGRFAVQRITVEEAK 120          
BLAST of CF504029 vs. ExPASy Swiss-Prot
Match: RS4_DROME (40S ribosomal protein S4 OS=Drosophila melanogaster GN=RpS4 PE=2 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 2.943e-43
Identity = 85/120 (70.83%), Postives = 97/120 (80.83%), Query Frame = 3
Query:   54 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAK 413
            MARG KKHLKRL APK WMLDKLGG FAP+PS+GPHK RE LPL++ LRNRLKYAL   EV  I+MQR V VDGKVRTD TYPAG+MDV+++ KT E FRL+YD KGRF +H +  EEAK
Sbjct:    1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAK 120          
BLAST of CF504029 vs. ExPASy Swiss-Prot
Match: RS4Y2_HUMAN (40S ribosomal protein S4, Y isoform 2 OS=Homo sapiens GN=RPS4Y2 PE=1 SV=3)

HSP 1 Score: 172.17 bits (435), Expect = 8.563e-43
Identity = 84/120 (70.00%), Postives = 97/120 (80.83%), Query Frame = 3
Query:   54 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAK 413
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQ  + +DGKVR D TYPAGF+DV+SI KT E+FRL+Y+TKG F +H +  EEAK
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQHFLKIDGKVRVDITYPAGFIDVISIEKTGEHFRLVYNTKGCFAVHRITVEEAK 120          
BLAST of CF504029 vs. ExPASy Swiss-Prot
Match: RS4_CANAL (40S ribosomal protein S4 OS=Candida albicans GN=RPS4 PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 3.045e-40
Identity = 79/119 (66.39%), Postives = 92/119 (77.31%), Query Frame = 3
Query:   54 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEA 410
            M RG KKHLKRL AP HWML KL G +AP+PS+GPH  RE LPL + LRNRL YAL  REV AI+MQ+HV V GKVRTD TYPAGFMDV+++  TNE+FRL YD KG+F +H +  EEA
Sbjct:    1 MGRGPKKHLKRLAAPSHWMLXKLSGTYAPRPSAGPHXLRESLPLXVFLRNRLXYALCGREVKAIMMQQHVQVVGKVRTDTTYPAGFMDVITLEATNEHFRLAYDVKGKFAVHRISAEEA 119          
BLAST of CF504029 vs. ExPASy Swiss-Prot
Match: RS4_CAEEL (40S ribosomal protein S4 OS=Caenorhabditis elegans GN=rps-4 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 7.404e-39
Identity = 79/117 (67.52%), Postives = 89/117 (76.07%), Query Frame = 3
Query:   60 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEA 410
            RG KKHLKRL AP HWMLDKLGG FA +P+ GPHK RE LPL L LRNRLKYAL Y E   IL QR V VDGKVRT   +P GFMDVV+I +TNE FR+LYDTKGR+ +H ++  EA
Sbjct:    2 RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEA 118          

HSP 2 Score: 21.557 bits (44), Expect = 7.404e-39
Identity = 8/10 (80.00%), Postives = 10/10 (100.00%), Query Frame = 1
Query:  415 FKLCKVRSVQ 444
            FKLCKV+SV+
Sbjct:  120 FKLCKVKSVR 129          
BLAST of CF504029 vs. ExPASy Swiss-Prot
Match: RS4_HORSE (40S ribosomal protein S4 (Fragment) OS=Equus caballus GN=RPS4 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 5.122e-37
Identity = 74/101 (73.27%), Postives = 83/101 (82.18%), Query Frame = 3
Query:  111 LDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAK 413
            LDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVRTD TYPAGFMDV+SI KT ENFRL+YDTKGRF +H +  EEAK
Sbjct:    1 LDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAK 101          

HSP 2 Score: 21.1718 bits (43), Expect = 5.122e-37
Identity = 7/10 (70.00%), Postives = 9/10 (90.00%), Query Frame = 1
Query:  412 KFKLCKVRSV 441
            K+KLCKVR +
Sbjct:  101 KYKLCKVRKI 110          
BLAST of CF504029 vs. ExPASy Swiss-Prot
Match: RS4_TETTH (40S ribosomal protein S4 OS=Tetrahymena thermophila PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 2.043e-36
Identity = 78/126 (61.90%), Postives = 94/126 (74.60%), Query Frame = 3
Query:   57 ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQR--HVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKIQALQ 428
            ARG KKHLKR+NAPK WML+KLGG +A +PS GPHK RE LPL ++L+ RL YAL  R+V  IL  +  +V VD KVR DK YP G MDVV I KT+++FR+LYDTKGRF L SL  EEAK + L+
Sbjct:    1 ARGPKKHLKRINAPKSWMLNKLGGIWATRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEGNVFVDQKVRRDKGYPTGLMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLK 126          
BLAST of CF504029 vs. ExPASy Swiss-Prot
Match: RS4_ENCCU (40S ribosomal protein S4 OS=Encephalitozoon cuniculi GN=RPS4 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 4.126e-29
Identity = 59/119 (49.58%), Postives = 81/119 (68.07%), Query Frame = 3
Query:   54 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEA 410
            M  G + HLKR  APK WMLDK GG FA  P+SGPHK  EC+PL  ++   L+YA  ++E+  IL ++++ V+G+VRT+  +P G  DVVSI KT E+FR+LY+   +F LH +  EEA
Sbjct:    1 MPTGHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSIILAEKNIKVNGRVRTNSHFPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEA 119          
BLAST of CF504029 vs. ExPASy Swiss-Prot
Match: RS4E_PYRKO (30S ribosomal protein S4e OS=Pyrococcus kodakaraensis GN=rps4e PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.720e-25
Identity = 55/120 (45.83%), Postives = 80/120 (66.67%), Query Frame = 3
Query:   60 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKIQ 419
            +G K+HLKRL AP  W + +    +A +PS GPH  +  +PLI ++R+ L YA T RE   IL +  +LVDG+VR D  +P G MDVVSIP+T E++R+L +  G+  LH + +EEAK++
Sbjct:    4 KGPKRHLKRLAAPTSWYIHRKAYKWAVRPSPGPHSMKTSIPLIYIVRDYLGYAKTAREARKILNEGKILVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEAKLK 123          
The following BLAST results are available for this feature:
BLAST of CF504029 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
RS4_CARGR1.016e-4470.8340S ribosomal protein S4 OS=Carabus granulatus GN=... [more]
RS4Y1_PONPY1.195e-4472.5040S ribosomal protein S4, Y isoform 1 OS=Pongo pyg... [more]
RS4_DROME2.943e-4370.8340S ribosomal protein S4 OS=Drosophila melanogaste... [more]
RS4Y2_HUMAN8.563e-4370.0040S ribosomal protein S4, Y isoform 2 OS=Homo sapi... [more]
RS4_CANAL3.045e-4066.3940S ribosomal protein S4 OS=Candida albicans GN=RP... [more]
RS4_CAEEL7.404e-3967.5240S ribosomal protein S4 OS=Caenorhabditis elegans... [more]
RS4_HORSE5.122e-3773.2740S ribosomal protein S4 (Fragment) OS=Equus cabal... [more]
RS4_TETTH2.043e-3661.9040S ribosomal protein S4 OS=Tetrahymena thermophil... [more]
RS4_ENCCU4.126e-2949.5840S ribosomal protein S4 OS=Encephalitozoon cunicu... [more]
RS4E_PYRKO4.720e-2545.8330S ribosomal protein S4e OS=Pyrococcus kodakaraen... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-517 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_E07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504029 ID=CF504029; Name=CF504029; organism=Citrus sinensis; type=EST; length=445bp
CAAAGAGAACAGACAAGCAGCCGCAGCGAGGCAGCAGCTTCAAACTCACA
AAAATGGCTAGAGGATTGAAGAAGCACTTGAAGAGGCTCAATGCCCCTAA
GCACTGGATGCTTGACAAGCTTGGTGGTGCATTTGCACCTAAGCCATCAT
CTGGTCCCCACAAGTCAAGGGAATGCTTGCCATTGATCCTTGTATTGCGA
AACCGTTTGAAATATGCTCTCACATATCGTGAAGTTATTGCTATTCTGAT
GCAACGACATGTTCTTGTTGATGGGAAGGTTAGGACAGATAAGACCTACC
CTGCTGGTTTCATGGATGTTGTGTCAATTCCCAAGACCAACGAGAACTTC
CGTCTCCTTTATGACACCAAGGGTCGCTTCCGTCTCCATTCCCTCAGAGA
TGAGGAGGCAAAAATTCAAGCTTTGCAAAGTTAGATCAGTCCAGT
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