CF504030

Overview
NameCF504030
Unique NameCF504030
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length286
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig514 contig Csv1_Contig514:1..286. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_GRATL (Chaperone protein dnaK OS=Gracilaria tenuistipitata var. liui GN=dnaK PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 7.828e-37
Identity = 76/95 (80.00%), Postives = 83/95 (87.37%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGA 286
            KII RNTT+PT KSE+FSTA D Q +VEI+VLQGEREF +DNKSLG+F LDGI PAPRGVPQIEV FDIDANGILSV A DKGTGK+Q ITITGA
Sbjct:  405 KIIDRNTTVPTKKSEIFSTAVDNQPNVEIHVLQGEREFTKDNKSLGTFRLDGIMPAPRGVPQIEVIFDIDANGILSVKAKDKGTGKEQSITITGA 499          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_CYAME (Chaperone protein dnaK OS=Cyanidioschyzon merolae GN=dnaK PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.335e-36
Identity = 72/95 (75.79%), Postives = 85/95 (89.47%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGA 286
            K+IPRNTT+PT K+E++STA D QT+VEI+VLQGERE  +DNKSLG+F LDGIPPAPRGVPQIEV FDIDANGILSV+A ++ TGK+Q ITITGA
Sbjct:  405 KMIPRNTTIPTRKTEIYSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGILSVTAKERSTGKQQSITITGA 499          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK2_PROMM (Chaperone protein dnaK2 OS=Prochlorococcus marinus (strain MIT 9313) GN=dnaK2 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.335e-36
Identity = 74/95 (77.89%), Postives = 84/95 (88.42%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGA 286
            K+I RNTT+PT KSE +STA DGQT+VEI+VLQGERE   DNKSLG+F LDGIPPAPRGVPQIEV FDIDANGILSV+A DKG+GK+Q I+ITGA
Sbjct:  404 KMITRNTTVPTKKSETYSTAVDGQTNVEIHVLQGEREMASDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGILSVNAKDKGSGKEQSISITGA 498          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_PROMT (Chaperone protein dnaK OS=Prochlorococcus marinus (strain NATL2A) GN=dnaK PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.975e-36
Identity = 73/95 (76.84%), Postives = 84/95 (88.42%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGA 286
            K+I RNTT+PT K+E +STA DGQT+VEI+VLQGERE   DNKSLG+F LDGIPPAPRGVPQIEV FDIDANGILSV+A DKG+GK+Q I+ITGA
Sbjct:  404 KMISRNTTVPTKKAETYSTAVDGQTNVEIHVLQGEREMASDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGILSVNAKDKGSGKEQSISITGA 498          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_CYACA (Chaperone protein dnaK OS=Cyanidium caldarium GN=dnaK PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.975e-36
Identity = 71/95 (74.74%), Postives = 85/95 (89.47%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGA 286
            K+IP+NTT+PT K+E++STA D QT+VEI+VLQGERE  +DNKSLG+F LDGIPPAPRGVPQIEV FDIDANGILSV+A +K TGK+Q +TITGA
Sbjct:  405 KMIPKNTTIPTRKTEIYSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGILSVTAKEKTTGKQQSVTITGA 499          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK2_SYNPX (Chaperone protein dnaK2 OS=Synechococcus sp. (strain WH8102) GN=dnaK2 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.975e-36
Identity = 73/95 (76.84%), Postives = 84/95 (88.42%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGA 286
            K+I RNTT+PT K+E +STA DGQT+VEI+VLQGERE   DNKSLG+F LDGIPPAPRGVPQIEV FDIDANGILSV+A DKG+GK+Q I+ITGA
Sbjct:  404 KMITRNTTVPTKKTETYSTAVDGQTNVEIHVLQGEREMASDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGILSVTAKDKGSGKEQSISITGA 498          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_GLOVI (Chaperone protein dnaK OS=Gloeobacter violaceus GN=dnaK PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.885e-36
Identity = 74/94 (78.72%), Postives = 81/94 (86.17%), Query Frame = 2
Query:    5 IIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGA 286
            IIPRNTT+PT KSE FSTAADGQTSVEI+V+QGER    DNKSLG F LDGIPPAPRGVPQ+EV FDIDANGILSV+A DK +GK Q I+ITGA
Sbjct:  405 IIPRNTTIPTRKSETFSTAADGQTSVEIHVIQGERSMAGDNKSLGRFRLDGIPPAPRGVPQVEVTFDIDANGILSVTAKDKASGKAQTISITGA 498          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK2_PROMA (Chaperone protein dnaK2 OS=Prochlorococcus marinus GN=dnaK2 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.627e-36
Identity = 72/95 (75.79%), Postives = 84/95 (88.42%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGA 286
            K+I RNTT+PT K+E +STA DGQT+VEI+VLQGERE   DNKSLG+F LDGIPP+PRGVPQIEV FDIDANGILSV+A DKG+GK+Q I+ITGA
Sbjct:  404 KMITRNTTVPTKKTETYSTAVDGQTNVEIHVLQGEREMASDNKSLGTFRLDGIPPSPRGVPQIEVTFDIDANGILSVTAKDKGSGKEQSISITGA 498          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_PORUM (Chaperone protein dnaK OS=Porphyra umbilicalis GN=dnaK PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.655e-36
Identity = 74/95 (77.89%), Postives = 81/95 (85.26%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGA 286
            KIIPRNTT+PT KSEVFSTA D Q +VEI VLQGERE  +DNKSLG+F LDGI PAPRGVPQIEV FDIDANGILSV A +K TGK+Q ITI+GA
Sbjct:  403 KIIPRNTTIPTKKSEVFSTAVDNQPNVEIQVLQGERELTKDNKSLGTFRLDGIMPAPRGVPQIEVTFDIDANGILSVKAKEKATGKEQSITISGA 497          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_PORPU (Chaperone protein dnaK OS=Porphyra purpurea GN=dnaK PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.655e-36
Identity = 74/95 (77.89%), Postives = 81/95 (85.26%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGA 286
            KIIPRNTT+PT KSEVFSTA D Q +VEI VLQGERE  +DNKSLG+F LDGI PAPRGVPQIEV FDIDANGILSV A +K TGK+Q ITI+GA
Sbjct:  403 KIIPRNTTIPTKKSEVFSTAVDNQPNVEIQVLQGERELTKDNKSLGTFRLDGIMPAPRGVPQIEVTFDIDANGILSVKAKEKATGKEQSITISGA 497          
The following BLAST results are available for this feature:
BLAST of CF504030 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_GRATL7.828e-3780.00Chaperone protein dnaK OS=Gracilaria tenuistipitat... [more]
DNAK_CYAME1.335e-3675.79Chaperone protein dnaK OS=Cyanidioschyzon merolae ... [more]
DNAK2_PROMM1.335e-3677.89Chaperone protein dnaK2 OS=Prochlorococcus marinus... [more]
DNAK_PROMT2.975e-3676.84Chaperone protein dnaK OS=Prochlorococcus marinus ... [more]
DNAK_CYACA2.975e-3674.74Chaperone protein dnaK OS=Cyanidium caldarium GN=d... [more]
DNAK2_SYNPX2.975e-3676.84Chaperone protein dnaK2 OS=Synechococcus sp. (stra... [more]
DNAK_GLOVI3.885e-3678.72Chaperone protein dnaK OS=Gloeobacter violaceus GN... [more]
DNAK2_PROMA6.627e-3675.79Chaperone protein dnaK2 OS=Prochlorococcus marinus... [more]
DNAK_PORUM8.655e-3677.89Chaperone protein dnaK OS=Porphyra umbilicalis GN=... [more]
DNAK_PORPU8.655e-3677.89Chaperone protein dnaK OS=Porphyra purpurea GN=dna... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-518 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504030 ID=CF504030; Name=CF504030; organism=Citrus sinensis; type=EST; length=286bp
CAAAATTATTCCTAGAAATACAACTTTGCCCACTTCCAAGTCAGAGGTGT
TCTCAACAGCTGCTGATGGTCAGACCAGTGTCGAGATCAATGTTCTCCAA
GGTGAAAGAGAATTCGTGAGGGACAACAAATCTCTTGGCAGCTTCCATCT
TGATGGCATCCCTCCAGCACCGCGTGGGGTTCCTCAAATTGAGGTTAAAT
TTGACATCGATGCCAATGGTATTCTTTCTGTCTCTGCTGTTGACAAAGGC
ACCGGAAAGAAACAAGACATCACCATTACTGGTGCT
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