CF504030

Overview
NameCF504030
Unique NameCF504030
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length286
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_CHLTE (Chaperone protein dnaK OS=Chlorobium tepidum GN=dnaK PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.404e-32
Identity = 67/92 (72.83%), Postives = 75/92 (81.52%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITI 277
            K+I  NTT+PT K E+FSTAAD QTSVE++VLQGER    DNK+LG FHL  IPPAPRGVPQIEV FDIDANGIL+VSA DK TGK+Q I I
Sbjct:  403 KLIEANTTIPTRKQEIFSTAADNQTSVEVHVLQGERPMASDNKTLGRFHLSDIPPAPRGVPQIEVTFDIDANGILNVSAKDKATGKEQSIKI 494          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_BACSK (Chaperone protein dnaK OS=Bacillus clausii (strain KSM-K16) GN=dnaK PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.404e-32
Identity = 68/95 (71.58%), Postives = 78/95 (82.11%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGA 286
            K+I RNTT+PTSKS+VFSTAAD Q SV+I+VLQGERE   DNK+LG F L  IPPAPRGVPQIEV FDIDANGI++V A D GT K+Q ITIT +
Sbjct:  379 KLIERNTTIPTSKSQVFSTAADNQPSVDIHVLQGEREMAADNKTLGRFQLTDIPPAPRGVPQIEVTFDIDANGIVNVKAKDLGTNKEQSITITSS 473          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: GRP75_CRIGR (Stress-70 protein, mitochondrial OS=Cricetulus griseus GN=HSPA9 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.445e-32
Identity = 68/92 (73.91%), Postives = 75/92 (81.52%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITI 277
            K+I RNTT+PT KS+VFSTAADGQT VEI V QGERE   DNK LG F L GIPPAPRGVPQIEV FD+DANGI+ VSA DKGTG++Q I I
Sbjct:  456 KLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQGEREMAGDNKLLGQFTLIGIPPAPRGVPQIEVTFDLDANGIVHVSAKDKGTGREQQIVI 547          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_WOLSU (Chaperone protein dnaK OS=Wolinella succinogenes GN=dnaK PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.445e-32
Identity = 69/95 (72.63%), Postives = 75/95 (78.95%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGA 286
            KII R TT+P  KS+VFSTA D Q +V I VLQGERE  RDNKSLG F L GIP APRGVPQIEV FDIDANGIL+VSA DK TGK Q+I ITG+
Sbjct:  404 KIIDRGTTIPVKKSQVFSTAEDNQPAVTIQVLQGERELARDNKSLGMFELSGIPAAPRGVPQIEVTFDIDANGILTVSAKDKATGKSQEIKITGS 498          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_METTE (Chaperone protein dnaK OS=Methanosarcina thermophila GN=dnaK PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.445e-32
Identity = 67/91 (73.63%), Postives = 77/91 (84.62%), Query Frame = 2
Query:    5 IIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITI 277
            +IPRNTT+PT KS++FSTAAD Q SVEI+VLQGER    +NK+LG F LDGIPPAPRGVPQIEV FDIDANGIL VSA D GTG++Q I+I
Sbjct:  385 LIPRNTTIPTRKSQIFSTAADNQPSVEIHVLQGERGIASENKTLGRFTLDGIPPAPRGVPQIEVTFDIDANGILHVSAKDLGTGREQSISI 475          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_KOCRD (Chaperone protein dnaK OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=dnaK PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.445e-32
Identity = 66/94 (70.21%), Postives = 76/94 (80.85%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITG 283
            K+I RNT +PT +SE F+TA D Q SV I V QGEREF RDNK+LG+F L GI PAPRG+PQIEV FDIDANGI+ VSA DKGTGK+Q +TITG
Sbjct:  387 KLIERNTAIPTKRSETFTTAEDNQPSVSIQVFQGEREFTRDNKNLGTFELTGIAPAPRGMPQIEVTFDIDANGIVHVSAKDKGTGKEQSMTITG 480          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_CYTH3 (Chaperone protein dnaK OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=dnaK PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.445e-32
Identity = 67/92 (72.83%), Postives = 77/92 (83.70%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITI 277
            K+I  NTT+P+ KSEVFSTA+D Q SVEI+VLQGER F +DN+S+G FHL  IPPAPR VPQIEV FDIDANGIL+VSA DKGTGK+Q I I
Sbjct:  404 KLIEANTTIPSKKSEVFSTASDNQPSVEIHVLQGERAFAKDNRSIGRFHLGDIPPAPRNVPQIEVTFDIDANGILNVSAKDKGTGKEQKIRI 495          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_BACHD (Chaperone protein dnaK OS=Bacillus halodurans GN=dnaK PE=2 SV=3)

HSP 1 Score: 136.346 bits (342), Expect = 4.445e-32
Identity = 67/95 (70.53%), Postives = 78/95 (82.11%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGA 286
            K+I RNTT+PTSKS++FSTAAD Q SV+I+VLQGERE   DNK+LG F L  IPPAPRGVPQIEV FDIDANGI++V A D GT K+Q ITIT +
Sbjct:  379 KLIERNTTIPTSKSQIFSTAADNQPSVDIHVLQGEREMAADNKTLGRFQLTDIPPAPRGVPQIEVTFDIDANGIVNVKAKDLGTNKEQSITITSS 473          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_ACIBL (Chaperone protein dnaK OS=Acidobacteria bacterium (strain Ellin345) GN=dnaK PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.445e-32
Identity = 66/94 (70.21%), Postives = 76/94 (80.85%), Query Frame = 2
Query:    5 IIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGA 286
            +IPRNTT+PT K+E FSTAAD Q SVEI+VLQGER     N++LG FHL G+PPAPRGVPQIEV FDIDANGIL+V+A D  TGK Q ITIT +
Sbjct:  405 MIPRNTTIPTKKTETFSTAADNQNSVEIHVLQGERPMAGQNRTLGKFHLTGLPPAPRGVPQIEVTFDIDANGILNVTAKDNATGKDQKITITSS 498          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK3_SYNP6 (Chaperone protein dnaK 3 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=dnaK3 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.445e-32
Identity = 66/93 (70.97%), Postives = 79/93 (84.95%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITIT 280
            KII RNTT+PTS+++VF+TA DGQ  VE++VLQGER  V+DNKSLG F L GIPPAPRGVPQIE+ FDIDA+GIL+VSA D+GTG+ Q I IT
Sbjct:  409 KIIERNTTIPTSRTQVFTTATDGQVMVEVHVLQGERALVKDNKSLGRFQLTGIPPAPRGVPQIELAFDIDADGILNVSARDRGTGRAQGIRIT 501          
The following BLAST results are available for this feature:
BLAST of CF504030 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_CHLTE3.404e-3272.83Chaperone protein dnaK OS=Chlorobium tepidum GN=dn... [more]
DNAK_BACSK3.404e-3271.58Chaperone protein dnaK OS=Bacillus clausii (strain... [more]
GRP75_CRIGR4.445e-3273.91Stress-70 protein, mitochondrial OS=Cricetulus gri... [more]
DNAK_WOLSU4.445e-3272.63Chaperone protein dnaK OS=Wolinella succinogenes G... [more]
DNAK_METTE4.445e-3273.63Chaperone protein dnaK OS=Methanosarcina thermophi... [more]
DNAK_KOCRD4.445e-3270.21Chaperone protein dnaK OS=Kocuria rhizophila (stra... [more]
DNAK_CYTH34.445e-3272.83Chaperone protein dnaK OS=Cytophaga hutchinsonii (... [more]
DNAK_BACHD4.445e-3270.53Chaperone protein dnaK OS=Bacillus halodurans GN=d... [more]
DNAK_ACIBL4.445e-3270.21Chaperone protein dnaK OS=Acidobacteria bacterium ... [more]
DNAK3_SYNP64.445e-3270.97Chaperone protein dnaK 3 OS=Synechococcus sp. (str... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-518 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504030 ID=CF504030; Name=CF504030; organism=Citrus sinensis; type=EST; length=286bp
CAAAATTATTCCTAGAAATACAACTTTGCCCACTTCCAAGTCAGAGGTGT
TCTCAACAGCTGCTGATGGTCAGACCAGTGTCGAGATCAATGTTCTCCAA
GGTGAAAGAGAATTCGTGAGGGACAACAAATCTCTTGGCAGCTTCCATCT
TGATGGCATCCCTCCAGCACCGCGTGGGGTTCCTCAAATTGAGGTTAAAT
TTGACATCGATGCCAATGGTATTCTTTCTGTCTCTGCTGTTGACAAAGGC
ACCGGAAAGAAACAAGACATCACCATTACTGGTGCT
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