CF504030

Overview
NameCF504030
Unique NameCF504030
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length286
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK1_SYNE7 (Chaperone protein dnaK1 OS=Synechococcus elongatus (strain PCC 7942) GN=dnaK1 PE=3 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 4.445e-32
Identity = 66/93 (70.97%), Postives = 79/93 (84.95%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITIT 280
            KII RNTT+PTS+++VF+TA DGQ  VE++VLQGER  V+DNKSLG F L GIPPAPRGVPQIE+ FDIDA+GIL+VSA D+GTG+ Q I IT
Sbjct:  409 KIIERNTTIPTSRTQVFTTATDGQVMVEVHVLQGERALVKDNKSLGRFQLTGIPPAPRGVPQIELAFDIDADGILNVSARDRGTGRAQGIRIT 501          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_THERP (Chaperone protein dnaK OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=dnaK PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 5.806e-32
Identity = 66/94 (70.21%), Postives = 79/94 (84.04%), Query Frame = 2
Query:    5 IIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGA 286
            IIPRNTT+PT KS++F+TA+D QT VEI+V+QGER    DNK+LG F LDGIPPAPRGVP+IEV FDIDANGIL+VSA D  TG++Q ITIT +
Sbjct:  406 IIPRNTTIPTRKSQIFTTASDNQTQVEIHVVQGERPMAADNKTLGRFILDGIPPAPRGVPKIEVTFDIDANGILTVSARDLATGREQKITITAS 499          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_METBF (Chaperone protein dnaK OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=dnaK PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.806e-32
Identity = 67/91 (73.63%), Postives = 76/91 (83.52%), Query Frame = 2
Query:    5 IIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITI 277
            +IPRNTT+PT KS+VFSTAAD Q SVEI+VLQGER    +NK+LG F LDGIPPAPRG+PQIEV FDIDANGIL V A D GTGK+Q I+I
Sbjct:  385 LIPRNTTIPTKKSQVFSTAADNQPSVEIHVLQGERGVASENKTLGRFTLDGIPPAPRGIPQIEVTFDIDANGILHVGAKDLGTGKEQSISI 475          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_CLAMS (Chaperone protein dnaK OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=dnaK PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.806e-32
Identity = 65/94 (69.15%), Postives = 76/94 (80.85%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITG 283
            K+I RNT +PT +SE F+TA D Q SV I V QGEREF RDNK+LG+F L GI PAPRG+PQ+EV FDIDANGI+ VSA DKGTGK+Q +TITG
Sbjct:  387 KLIERNTAIPTKRSETFTTADDNQPSVAIQVFQGEREFTRDNKNLGTFELTGIAPAPRGIPQVEVTFDIDANGIVHVSAKDKGTGKEQSMTITG 480          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_CLAM3 (Chaperone protein dnaK OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=dnaK PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.806e-32
Identity = 65/94 (69.15%), Postives = 76/94 (80.85%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITG 283
            K+I RNT +PT +SE F+TA D Q SV I V QGEREF RDNK+LG+F L GI PAPRG+PQ+EV FDIDANGI+ VSA DKGTGK+Q +TITG
Sbjct:  387 KLIERNTAIPTKRSETFTTADDNQPSVAIQVFQGEREFTRDNKNLGTFELTGIAPAPRGIPQVEVTFDIDANGIVHVSAKDKGTGKEQSMTITG 480          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_BACLD (Chaperone protein dnaK OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=dnaK PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.806e-32
Identity = 67/92 (72.83%), Postives = 78/92 (84.78%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITI 277
            K+I RNTT+PTSKS+VFSTAAD QT+V+I+VLQGER    DNK+LG F L  IPPAPRGVPQIEV FDID NGI++VSA D GTGK+Q+ITI
Sbjct:  380 KLIERNTTIPTSKSQVFSTAADNQTAVDIHVLQGERPMAADNKTLGRFQLTDIPPAPRGVPQIEVSFDIDKNGIVNVSAKDLGTGKEQNITI 471          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_SALRD (Chaperone protein dnaK OS=Salinibacter ruber (strain DSM 13855) GN=dnaK PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.582e-32
Identity = 64/91 (70.33%), Postives = 78/91 (85.71%), Query Frame = 2
Query:    5 IIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITI 277
            +I  NTT+PT +SEVFSTAAD QTSVE++VLQG+RE  +DN++LG FHLDGIPPAPRG PQIEV FDI+A+GIL+VSA DK TGK+Q I +
Sbjct:  404 LIEANTTIPTKESEVFSTAADNQTSVEVHVLQGDREMAKDNRTLGRFHLDGIPPAPRGTPQIEVTFDINADGILNVSAEDKDTGKEQSIRV 494          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_PROAC (Chaperone protein dnaK OS=Propionibacterium acnes GN=dnaK PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.582e-32
Identity = 66/94 (70.21%), Postives = 76/94 (80.85%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITG 283
            KII RNTT+PT +SEVF+TA D Q SV I V QGEREFVRDNKSLG+F L G+ PAPRG+PQIEV FDIDANGI+ V A D  TGK+Q +T+TG
Sbjct:  382 KIIERNTTIPTKRSEVFTTAEDNQPSVMIQVFQGEREFVRDNKSLGNFELTGLMPAPRGIPQIEVSFDIDANGIVHVHAKDMATGKEQSMTVTG 475          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_BIFA0 (Chaperone protein dnaK OS=Bifidobacterium animalis subsp. lactis (strain AD011) GN=dnaK PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.582e-32
Identity = 67/94 (71.28%), Postives = 75/94 (79.79%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITG 283
            K+I RNT +P  +SE+FSTA D Q SV I V QGEREF RDNK LG+F L GI PAPRGVPQIEV FDIDANGI+ VSA DKGTGK+Q +TITG
Sbjct:  389 KLIERNTAIPAKRSEIFSTAEDNQPSVLIQVYQGEREFARDNKPLGTFELTGIAPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGKEQSMTITG 482          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: HSP7F_CAEEL (Heat shock 70 kDa protein F, mitochondrial OS=Caenorhabditis elegans GN=hsp-6 PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 9.903e-32
Identity = 66/92 (71.74%), Postives = 75/92 (81.52%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITI 277
            K+I RNTT+PT KS+VFSTAADGQT V+I V QGERE    NK LG F L GIPPAPRGVPQ+EV FDIDANGI++VSA D+GTGK+Q I I
Sbjct:  435 KLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNKLLGQFSLVGIPPAPRGVPQVEVTFDIDANGIVNVSARDRGTGKEQQIVI 526          
The following BLAST results are available for this feature:
BLAST of CF504030 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK1_SYNE74.445e-3270.97Chaperone protein dnaK1 OS=Synechococcus elongatus... [more]
DNAK_THERP5.806e-3270.21Chaperone protein dnaK OS=Thermomicrobium roseum (... [more]
DNAK_METBF5.806e-3273.63Chaperone protein dnaK OS=Methanosarcina barkeri (... [more]
DNAK_CLAMS5.806e-3269.15Chaperone protein dnaK OS=Clavibacter michiganensi... [more]
DNAK_CLAM35.806e-3269.15Chaperone protein dnaK OS=Clavibacter michiganensi... [more]
DNAK_BACLD5.806e-3272.83Chaperone protein dnaK OS=Bacillus licheniformis (... [more]
DNAK_SALRD7.582e-3270.33Chaperone protein dnaK OS=Salinibacter ruber (stra... [more]
DNAK_PROAC7.582e-3270.21Chaperone protein dnaK OS=Propionibacterium acnes ... [more]
DNAK_BIFA07.582e-3271.28Chaperone protein dnaK OS=Bifidobacterium animalis... [more]
HSP7F_CAEEL9.903e-3271.74Heat shock 70 kDa protein F, mitochondrial OS=Caen... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-518 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504030 ID=CF504030; Name=CF504030; organism=Citrus sinensis; type=EST; length=286bp
CAAAATTATTCCTAGAAATACAACTTTGCCCACTTCCAAGTCAGAGGTGT
TCTCAACAGCTGCTGATGGTCAGACCAGTGTCGAGATCAATGTTCTCCAA
GGTGAAAGAGAATTCGTGAGGGACAACAAATCTCTTGGCAGCTTCCATCT
TGATGGCATCCCTCCAGCACCGCGTGGGGTTCCTCAAATTGAGGTTAAAT
TTGACATCGATGCCAATGGTATTCTTTCTGTCTCTGCTGTTGACAAAGGC
ACCGGAAAGAAACAAGACATCACCATTACTGGTGCT
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