CF504030

Overview
NameCF504030
Unique NameCF504030
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length286
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_LEIXX (Chaperone protein dnaK OS=Leifsonia xyli subsp. xyli GN=dnaK PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 9.903e-32
Identity = 65/94 (69.15%), Postives = 75/94 (79.79%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITG 283
            K+I RNT +PT +SE F+TA D Q SV I V QGEREF RDNK LG+F L GI PAPRG+PQ+EV FDIDANGI+ VSA DKGTGK+Q +TITG
Sbjct:  388 KLIERNTAIPTKRSETFTTADDNQPSVAIQVFQGEREFTRDNKPLGTFELTGIAPAPRGIPQVEVTFDIDANGIVHVSAKDKGTGKEQSMTITG 481          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_DESAA (Chaperone protein dnaK OS=Desulfatibacillum alkenivorans (strain AK-01) GN=dnaK PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 9.903e-32
Identity = 67/95 (70.53%), Postives = 78/95 (82.11%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGA 286
            K+I +NTT+PT KS+VFSTAAD Q +V I+VLQGERE    NK+LG F L GIPPAPRGVPQIEV FDIDANGI+SVSA D+GTGK+Q I IT +
Sbjct:  405 KLIEKNTTIPTKKSQVFSTAADNQPAVSIHVLQGEREMATGNKTLGRFELVGIPPAPRGVPQIEVTFDIDANGIVSVSAKDQGTGKEQSIKITAS 499          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_CHLL2 (Chaperone protein dnaK OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=dnaK PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 9.903e-32
Identity = 67/92 (72.83%), Postives = 75/92 (81.52%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITI 277
            ++I  NTT+PT K EVFSTAAD QTSVE++VLQGER    DNK+LG FHL  IPPAPRGVPQIEV FDID+NGILSVSA DK TGK+Q I I
Sbjct:  403 RLIEANTTIPTRKQEVFSTAADSQTSVEVHVLQGERPMASDNKTLGRFHLGDIPPAPRGVPQIEVTFDIDSNGILSVSAKDKATGKEQTIRI 494          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_PROA2 (Chaperone protein dnaK OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=dnaK PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.293e-31
Identity = 66/92 (71.74%), Postives = 74/92 (80.43%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITI 277
            K+I  NTT+PT K EVFSTAAD QTSVE++VLQGER    DNK+LG FHL  IPPAPRG+PQ+EV FDIDANGIL VSA DK TGK+Q I I
Sbjct:  403 KLIEANTTIPTKKQEVFSTAADNQTSVEVHVLQGERPMASDNKTLGRFHLGDIPPAPRGMPQVEVAFDIDANGILHVSAKDKATGKEQSIRI 494          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_PEDPA (Chaperone protein dnaK OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=dnaK PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.293e-31
Identity = 66/92 (71.74%), Postives = 77/92 (83.70%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITI 277
            K+I RNTT+PTSKS+VFSTAAD Q +V+I+VLQGER    DNK+LG F L  IP APRG+PQIEVKFDID NGI++VSA DKGTGK+Q ITI
Sbjct:  383 KLIDRNTTIPTSKSQVFSTAADNQPAVDIHVLQGERPMAADNKTLGRFQLTDIPAAPRGIPQIEVKFDIDKNGIVNVSATDKGTGKEQKITI 474          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_GEOKA (Chaperone protein dnaK OS=Geobacillus kaustophilus GN=dnaK PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.293e-31
Identity = 67/92 (72.83%), Postives = 76/92 (82.61%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITI 277
            K+I RNTT+PTSKS+VF+TAAD QT+V+I+VLQGER    DNKSLG F L GIPPAPRGVPQIEV FDIDANGI+ V A D GT K+Q ITI
Sbjct:  379 KLIERNTTIPTSKSQVFTTAADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPRGVPQIEVTFDIDANGIVHVRAKDLGTNKEQSITI 470          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_DICTD (Chaperone protein dnaK OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=dnaK PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.293e-31
Identity = 68/95 (71.58%), Postives = 78/95 (82.11%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGA 286
            KII RNT +P SKS++F+TAAD QTSVEI+VLQGER   +DN SLG F LDGIPPAPRGVPQIEV FDID NGI+ VSA DK TG++Q ITI+ A
Sbjct:  381 KIIERNTPIPVSKSQIFTTAADYQTSVEIHVLQGERALAKDNISLGRFILDGIPPAPRGVPQIEVTFDIDVNGIVHVSAKDKATGREQRITISNA 475          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_AZOC5 (Chaperone protein dnaK OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=dnaK PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.293e-31
Identity = 67/92 (72.83%), Postives = 74/92 (80.43%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITI 277
            ++I RNTT+PT KS+VFSTA DGQT+V I V QGERE   DNK LG F L GIPPAPRGVPQIEV FDIDANGI+ VSA DKGTGK+Q I I
Sbjct:  405 RLIDRNTTIPTKKSQVFSTAEDGQTAVTIRVFQGEREMAADNKILGQFDLVGIPPAPRGVPQIEVTFDIDANGIVQVSAKDKGTGKEQQIRI 496          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: HSP7M_PHAVU (Heat shock 70 kDa protein, mitochondrial OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.689e-31
Identity = 67/92 (72.83%), Postives = 75/92 (81.52%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITI 277
            ++I RNTT+PT KS+VFSTAAD QT V I VLQGERE   DNK LG F L GIPPAPRG+PQIEV FDIDANGI++VSA DK TGK+Q ITI
Sbjct:  453 RLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKMLGEFDLVGIPPAPRGLPQIEVTFDIDANGIVTVSAKDKSTGKEQQITI 544          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_PICTO (Chaperone protein dnaK OS=Picrophilus torridus GN=dnaK PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.689e-31
Identity = 65/92 (70.65%), Postives = 79/92 (85.87%), Query Frame = 2
Query:    5 IIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITIT 280
            +IP NTT+PT KS++F+TAAD QT+V I+V+QGER   +D+ SLG F+LDGIPPAPRGVPQIEV FDIDANGIL+VSA D GTGK+Q I+IT
Sbjct:  387 LIPANTTIPTKKSQIFTTAADMQTTVTIHVVQGERPLAKDDVSLGMFNLDGIPPAPRGVPQIEVTFDIDANGILNVSAKDLGTGKQQSISIT 478          
The following BLAST results are available for this feature:
BLAST of CF504030 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_LEIXX9.903e-3269.15Chaperone protein dnaK OS=Leifsonia xyli subsp. xy... [more]
DNAK_DESAA9.903e-3270.53Chaperone protein dnaK OS=Desulfatibacillum alkeni... [more]
DNAK_CHLL29.903e-3272.83Chaperone protein dnaK OS=Chlorobium limicola (str... [more]
DNAK_PROA21.293e-3171.74Chaperone protein dnaK OS=Prosthecochloris aestuar... [more]
DNAK_PEDPA1.293e-3171.74Chaperone protein dnaK OS=Pediococcus pentosaceus ... [more]
DNAK_GEOKA1.293e-3172.83Chaperone protein dnaK OS=Geobacillus kaustophilus... [more]
DNAK_DICTD1.293e-3171.58Chaperone protein dnaK OS=Dictyoglomus turgidum (s... [more]
DNAK_AZOC51.293e-3172.83Chaperone protein dnaK OS=Azorhizobium caulinodans... [more]
HSP7M_PHAVU1.689e-3172.83Heat shock 70 kDa protein, mitochondrial OS=Phaseo... [more]
DNAK_PICTO1.689e-3170.65Chaperone protein dnaK OS=Picrophilus torridus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-518 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504030 ID=CF504030; Name=CF504030; organism=Citrus sinensis; type=EST; length=286bp
CAAAATTATTCCTAGAAATACAACTTTGCCCACTTCCAAGTCAGAGGTGT
TCTCAACAGCTGCTGATGGTCAGACCAGTGTCGAGATCAATGTTCTCCAA
GGTGAAAGAGAATTCGTGAGGGACAACAAATCTCTTGGCAGCTTCCATCT
TGATGGCATCCCTCCAGCACCGCGTGGGGTTCCTCAAATTGAGGTTAAAT
TTGACATCGATGCCAATGGTATTCTTTCTGTCTCTGCTGTTGACAAAGGC
ACCGGAAAGAAACAAGACATCACCATTACTGGTGCT
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