CF504030

Overview
NameCF504030
Unique NameCF504030
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length286
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_HELPS (Chaperone protein dnaK OS=Helicobacter pylori (strain Shi470) GN=dnaK PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.206e-31
Identity = 67/95 (70.53%), Postives = 75/95 (78.95%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGA 286
            K+I R TT+P  KS+VFSTA D Q +V I VLQGERE  RDNKSLG F L GI PAPRGVPQIEV FDIDANGIL+VSA DK TGK Q+I I+G+
Sbjct:  404 KVIDRGTTIPAKKSQVFSTAEDNQPAVSIMVLQGERELARDNKSLGKFDLQGIAPAPRGVPQIEVTFDIDANGILTVSAQDKNTGKSQEIKISGS 498          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_HELPH (Chaperone protein dnaK OS=Helicobacter pylori (strain HPAG1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.206e-31
Identity = 67/95 (70.53%), Postives = 75/95 (78.95%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGA 286
            K+I R TT+P  KS+VFSTA D Q +V I VLQGERE  RDNKSLG F L GI PAPRGVPQIEV FDIDANGIL+VSA DK TGK Q+I I+G+
Sbjct:  404 KVIDRGTTIPAKKSQVFSTAEDNQPAVSIMVLQGERELARDNKSLGKFDLQGIAPAPRGVPQIEVTFDIDANGILTVSAQDKNTGKSQEIKISGS 498          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_HELPG (Chaperone protein dnaK OS=Helicobacter pylori (strain G27) GN=dnaK PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.206e-31
Identity = 67/95 (70.53%), Postives = 75/95 (78.95%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGA 286
            K+I R TT+P  KS+VFSTA D Q +V I VLQGERE  RDNKSLG F L GI PAPRGVPQIEV FDIDANGIL+VSA DK TGK Q+I I+G+
Sbjct:  404 KVIDRGTTIPAKKSQVFSTAEDNQPAVSIMVLQGERELARDNKSLGKFDLQGIAPAPRGVPQIEVTFDIDANGILTVSAQDKNTGKSQEIKISGS 498          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_HELP2 (Chaperone protein dnaK OS=Helicobacter pylori (strain P12) GN=dnaK PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.206e-31
Identity = 67/95 (70.53%), Postives = 75/95 (78.95%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGA 286
            K+I R TT+P  KS+VFSTA D Q +V I VLQGERE  RDNKSLG F L GI PAPRGVPQIEV FDIDANGIL+VSA DK TGK Q+I I+G+
Sbjct:  404 KVIDRGTTIPAKKSQVFSTAEDNQPAVSIMVLQGERELARDNKSLGKFDLQGIAPAPRGVPQIEVTFDIDANGILTVSAQDKNTGKSQEIKISGS 498          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_RHOS5 (Chaperone protein dnaK OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=dnaK PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.881e-31
Identity = 65/92 (70.65%), Postives = 75/92 (81.52%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITI 277
            ++I RNTT+PT KS+VFSTA D Q +V I V QGERE   DNK LG F+L+ IPPAPRG+PQIEV FDIDANGI+SVSA DKGTGK Q+ITI
Sbjct:  406 RLIDRNTTIPTKKSQVFSTAEDNQNAVTIRVFQGEREMAADNKMLGQFNLEDIPPAPRGMPQIEVTFDIDANGIVSVSAKDKGTGKSQNITI 497          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_FINM2 (Chaperone protein dnaK OS=Finegoldia magna (strain ATCC 29328) GN=dnaK PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.881e-31
Identity = 67/95 (70.53%), Postives = 78/95 (82.11%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGA 286
            K+I RNTT+PT KS+VF+TAADGQTSVEI VLQGERE   DN  LG F+L  IP APRGVPQIEV FDIDANGI++VSA D G+GK+Q +TIT +
Sbjct:  382 KLIERNTTIPTKKSQVFTTAADGQTSVEIKVLQGEREMAADNTLLGQFNLTEIPAAPRGVPQIEVTFDIDANGIVNVSAKDLGSGKQQAMTITSS 476          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_EXISA (Chaperone protein dnaK OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=dnaK PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.881e-31
Identity = 67/92 (72.83%), Postives = 76/92 (82.61%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITI 277
            K+I RNTT+PTSKS+VFSTAAD Q +V+I+VLQGER    DNK+LG F L  IPPAPRGVPQIEVKFDIDANGI+ VSA D GT K+Q ITI
Sbjct:  379 KLIDRNTTIPTSKSQVFSTAADNQPAVDIHVLQGERPMAPDNKTLGRFQLTDIPPAPRGVPQIEVKFDIDANGIVHVSAKDLGTNKEQSITI 470          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_CHLPB (Chaperone protein dnaK OS=Chlorobium phaeobacteroides (strain BS1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.881e-31
Identity = 66/92 (71.74%), Postives = 74/92 (80.43%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITI 277
            K+I  NTT+P+ K EVFSTAAD QTSVE++VLQGER    DNK+LG FHL  IPPAPRGVPQIEV FDID+NGIL VSA DK TGK+Q I I
Sbjct:  403 KLIEANTTIPSKKQEVFSTAADNQTSVEVHVLQGERPMASDNKTLGRFHLGDIPPAPRGVPQIEVAFDIDSNGILHVSAKDKATGKEQSIRI 494          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_CHLCH (Chaperone protein dnaK OS=Chlorobium chlorochromatii (strain CaD3) GN=dnaK PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.881e-31
Identity = 65/92 (70.65%), Postives = 74/92 (80.43%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITI 277
            K+I  NTT+PT K EVFSTA+D QTSVE++VLQGER    DNK+LG FHL  IPPAPRG+PQ+EV FDIDANGIL VSA DK TGK+Q I I
Sbjct:  403 KLIEANTTIPTKKQEVFSTASDNQTSVEVHVLQGERPMAADNKTLGRFHLGDIPPAPRGIPQVEVIFDIDANGILHVSAKDKATGKEQSIRI 494          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_ARTS2 (Chaperone protein dnaK OS=Arthrobacter sp. (strain FB24) GN=dnaK PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.881e-31
Identity = 65/93 (69.89%), Postives = 74/93 (79.57%), Query Frame = 2
Query:    5 IIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITG 283
            +I RNT +PT +SE F+TA D Q SV I V QGEREF RDNK LG+F L GI PAPRGVPQ+EV FDIDANGI+ VSA DKGTGK+Q +TITG
Sbjct:  388 LIERNTAIPTKRSETFTTADDNQPSVAIQVFQGEREFTRDNKPLGTFELTGIAPAPRGVPQVEVTFDIDANGIVHVSAKDKGTGKEQSMTITG 480          
The following BLAST results are available for this feature:
BLAST of CF504030 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_HELPS2.206e-3170.53Chaperone protein dnaK OS=Helicobacter pylori (str... [more]
DNAK_HELPH2.206e-3170.53Chaperone protein dnaK OS=Helicobacter pylori (str... [more]
DNAK_HELPG2.206e-3170.53Chaperone protein dnaK OS=Helicobacter pylori (str... [more]
DNAK_HELP22.206e-3170.53Chaperone protein dnaK OS=Helicobacter pylori (str... [more]
DNAK_RHOS52.881e-3170.65Chaperone protein dnaK OS=Rhodobacter sphaeroides ... [more]
DNAK_FINM22.881e-3170.53Chaperone protein dnaK OS=Finegoldia magna (strain... [more]
DNAK_EXISA2.881e-3172.83Chaperone protein dnaK OS=Exiguobacterium sp. (str... [more]
DNAK_CHLPB2.881e-3171.74Chaperone protein dnaK OS=Chlorobium phaeobacteroi... [more]
DNAK_CHLCH2.881e-3170.65Chaperone protein dnaK OS=Chlorobium chlorochromat... [more]
DNAK_ARTS22.881e-3169.89Chaperone protein dnaK OS=Arthrobacter sp. (strain... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-518 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504030 ID=CF504030; Name=CF504030; organism=Citrus sinensis; type=EST; length=286bp
CAAAATTATTCCTAGAAATACAACTTTGCCCACTTCCAAGTCAGAGGTGT
TCTCAACAGCTGCTGATGGTCAGACCAGTGTCGAGATCAATGTTCTCCAA
GGTGAAAGAGAATTCGTGAGGGACAACAAATCTCTTGGCAGCTTCCATCT
TGATGGCATCCCTCCAGCACCGCGTGGGGTTCCTCAAATTGAGGTTAAAT
TTGACATCGATGCCAATGGTATTCTTTCTGTCTCTGCTGTTGACAAAGGC
ACCGGAAAGAAACAAGACATCACCATTACTGGTGCT
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