CF504030

Overview
NameCF504030
Unique NameCF504030
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length286
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig514 contig Csv1_Contig514:1..286. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_PORHA (Chaperone protein dnaK OS=Porphyra haitanensis GN=dnaK PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.655e-36
Identity = 74/95 (77.89%), Postives = 81/95 (85.26%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGA 286
            KIIPRNTT+PT KSEVFSTA D Q +VEI VLQGERE  +DNKSLG+F LDGI PAPRGVPQIEV FDIDANGILSV A +K TGK+Q ITI+GA
Sbjct:  404 KIIPRNTTIPTKKSEVFSTAVDNQPNVEIQVLQGERELTKDNKSLGTFRLDGIMPAPRGVPQIEVTFDIDANGILSVKAKEKATGKEQSITISGA 498          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_PROM5 (Chaperone protein dnaK OS=Prochlorococcus marinus (strain MIT 9515) GN=dnaK PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.130e-35
Identity = 73/95 (76.84%), Postives = 83/95 (87.37%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGA 286
            K+I RNTT+PT KSE +STA DGQT+VEI+VLQGERE   DNKSLG+F LDGIP APRGVPQIEV FDIDANGILSV+A DKG+GK+Q I+ITGA
Sbjct:  404 KMITRNTTVPTKKSETYSTAVDGQTNVEIHVLQGEREMASDNKSLGTFRLDGIPSAPRGVPQIEVTFDIDANGILSVTAKDKGSGKEQSISITGA 498          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK2_PROMP (Chaperone protein dnaK2 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=dnaK2 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.130e-35
Identity = 73/95 (76.84%), Postives = 83/95 (87.37%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGA 286
            K+I RNTT+PT KSE +STA DGQT+VEI+VLQGERE   DNKSLG+F LDGIP APRGVPQIEV FDIDANGILSV+A DKG+GK+Q I+ITGA
Sbjct:  404 KMITRNTTVPTKKSETYSTAVDGQTNVEIHVLQGEREMASDNKSLGTFRLDGIPSAPRGVPQIEVTFDIDANGILSVTAKDKGSGKEQSISITGA 498          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_PORYE (Chaperone protein dnaK OS=Porphyra yezoensis GN=dnaK PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.295e-35
Identity = 73/95 (76.84%), Postives = 80/95 (84.21%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGA 286
            KIIPRNTT+PT KSEVFSTA D   +VEI VLQGERE  +DNKSLG+F LDGI PAPRGVPQIEV FDIDANGILSV A +K TGK+Q ITI+GA
Sbjct:  404 KIIPRNTTIPTKKSEVFSTAVDNPPNVEIQVLQGERELTKDNKSLGTFRLDGIMPAPRGVPQIEVTFDIDANGILSVKAKEKATGKEQSITISGA 498          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_EUBE2 (Chaperone protein dnaK OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=dnaK PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.327e-35
Identity = 70/93 (75.27%), Postives = 82/93 (88.17%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITIT 280
            ++I RNTT+PT KS++FSTAAD QT+V+INV+QGER+F RDNKSLG F LDGIPPA RGVPQIEV FDIDANGI++VSA D GTGK+Q ITIT
Sbjct:  383 RLIERNTTIPTKKSQIFSTAADNQTAVDINVVQGERQFARDNKSLGQFRLDGIPPARRGVPQIEVTFDIDANGIVNVSAKDLGTGKEQHITIT 475          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_AMOA5 (Chaperone protein dnaK OS=Amoebophilus asiaticus (strain 5a2) GN=dnaK PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 9.569e-35
Identity = 70/92 (76.09%), Postives = 80/92 (86.96%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITI 277
            K+I  NTT+PT KSEVFSTAAD Q+SVEI+VLQGER   RDN+++G FHLDGIPPAPRG+PQIEV FDIDANGIL+VSA DKGTGK+Q I I
Sbjct:  406 KLIEANTTIPTKKSEVFSTAADSQSSVEIHVLQGERAMARDNRTIGKFHLDGIPPAPRGIPQIEVTFDIDANGILNVSAKDKGTGKEQKIRI 497          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_METI4 (Chaperone protein dnaK OS=Methylacidiphilum infernorum (isolate V4) GN=dnaK PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.632e-34
Identity = 71/94 (75.53%), Postives = 79/94 (84.04%), Query Frame = 2
Query:    5 IIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGA 286
            +IPRNTT+PT KS++FST +D Q SVEI VLQGER   RDNK LG FHLDGIPPAPRGVPQIEV FDIDANGIL VSA D GTG++Q ITITG+
Sbjct:  408 MIPRNTTIPTRKSQIFSTFSDNQPSVEIKVLQGERPMARDNKLLGVFHLDGIPPAPRGVPQIEVTFDIDANGILHVSAKDLGTGREQKITITGS 501          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_CAMHC (Chaperone protein dnaK OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=dnaK PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.632e-34
Identity = 71/95 (74.74%), Postives = 82/95 (86.32%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGA 286
            K+I + TT+PT KS+VFSTA D Q++V INVLQGEREF RDNKSLG+F+LDGI PAPRGVPQIEV+FDIDANGIL+VSA DK TGK  DI ITG+
Sbjct:  404 KLIDKGTTIPTKKSQVFSTAEDNQSAVTINVLQGEREFARDNKSLGNFNLDGIMPAPRGVPQIEVEFDIDANGILTVSAKDKATGKATDIKITGS 498          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_MOOTA (Chaperone protein dnaK OS=Moorella thermoacetica (strain ATCC 39073) GN=dnaK PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.784e-34
Identity = 71/95 (74.74%), Postives = 81/95 (85.26%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGA 286
            K+I RNTT+PTSKS++FSTAAD QT+VEI+VLQGER    DNK+LG F L GIPPAPRGVPQIEVKFDIDANGI+ VSA D GTGK+Q ITIT +
Sbjct:  381 KLIERNTTIPTSKSQIFSTAADNQTTVEIHVLQGERAMAADNKTLGRFQLTGIPPAPRGVPQIEVKFDIDANGIVHVSAKDLGTGKQQAITITSS 475          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_CAMJR (Chaperone protein dnaK OS=Campylobacter jejuni (strain RM1221) GN=dnaK PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.784e-34
Identity = 70/95 (73.68%), Postives = 82/95 (86.32%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGA 286
            KII + TT+PT K +VFSTA D Q++V INVLQGEREF RDNKSLG+F+L+GIPPAPRG+PQIEV FDIDANGIL+VSA DK TGK Q+I ITG+
Sbjct:  404 KIIEKGTTIPTKKEQVFSTAEDNQSAVTINVLQGEREFSRDNKSLGNFNLEGIPPAPRGMPQIEVTFDIDANGILTVSAKDKATGKAQEIKITGS 498          
The following BLAST results are available for this feature:
BLAST of CF504030 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_PORHA8.655e-3677.89Chaperone protein dnaK OS=Porphyra haitanensis GN=... [more]
DNAK_PROM51.130e-3576.84Chaperone protein dnaK OS=Prochlorococcus marinus ... [more]
DNAK2_PROMP1.130e-3576.84Chaperone protein dnaK2 OS=Prochlorococcus marinus... [more]
DNAK_PORYE4.295e-3576.84Chaperone protein dnaK OS=Porphyra yezoensis GN=dn... [more]
DNAK_EUBE27.327e-3575.27Chaperone protein dnaK OS=Eubacterium eligens (str... [more]
DNAK_AMOA59.569e-3576.09Chaperone protein dnaK OS=Amoebophilus asiaticus (... [more]
DNAK_METI41.632e-3475.53Chaperone protein dnaK OS=Methylacidiphilum infern... [more]
DNAK_CAMHC1.632e-3474.74Chaperone protein dnaK OS=Campylobacter hominis (s... [more]
DNAK_MOOTA2.784e-3474.74Chaperone protein dnaK OS=Moorella thermoacetica (... [more]
DNAK_CAMJR2.784e-3473.68Chaperone protein dnaK OS=Campylobacter jejuni (st... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-518 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504030 ID=CF504030; Name=CF504030; organism=Citrus sinensis; type=EST; length=286bp
CAAAATTATTCCTAGAAATACAACTTTGCCCACTTCCAAGTCAGAGGTGT
TCTCAACAGCTGCTGATGGTCAGACCAGTGTCGAGATCAATGTTCTCCAA
GGTGAAAGAGAATTCGTGAGGGACAACAAATCTCTTGGCAGCTTCCATCT
TGATGGCATCCCTCCAGCACCGCGTGGGGTTCCTCAAATTGAGGTTAAAT
TTGACATCGATGCCAATGGTATTCTTTCTGTCTCTGCTGTTGACAAAGGC
ACCGGAAAGAAACAAGACATCACCATTACTGGTGCT
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