CF504030

Overview
NameCF504030
Unique NameCF504030
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length286
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_SHESW (Chaperone protein dnaK OS=Shewanella sp. (strain W3-18-1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.338e-28
Identity = 63/92 (68.48%), Postives = 74/92 (80.43%), Query Frame = 2 
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITI 277
            K+I +NTT+PT   +VFSTA D Q++V I+VLQGER+    NKSLG F+LDGI PAPRG PQIEV FDIDA+GIL VSA DK TGKKQ+ITI
Sbjct:  409 KLIEKNTTIPTKAQQVFSTADDNQSAVTIHVLQGERKQASANKSLGQFNLDGIEPAPRGQPQIEVMFDIDADGILHVSATDKKTGKKQNITI 500
[Close]
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_SHEPC (Chaperone protein dnaK OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=dnaK PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.338e-28
Identity = 63/92 (68.48%), Postives = 74/92 (80.43%), Query Frame = 2 
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITI 277
            K+I +NTT+PT   +VFSTA D Q++V I+VLQGER+    NKSLG F+LDGI PAPRG PQIEV FDIDA+GIL VSA DK TGKKQ+ITI
Sbjct:  409 KLIEKNTTIPTKAQQVFSTADDNQSAVTIHVLQGERKQASANKSLGQFNLDGIEPAPRGQPQIEVMFDIDADGILHVSATDKKTGKKQNITI 500
[Close]
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_SALTY (Chaperone protein dnaK OS=Salmonella typhimurium GN=dnaK PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 1.338e-28
Identity = 62/91 (68.13%), Postives = 75/91 (82.42%), Query Frame = 2 
Query:    5 IIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITI 277
            +I +NTT+PT  S+VFSTA D Q++V I+VLQGER+   DNKSLG F+LDGI PAPRG+PQIEV FDIDA+GIL VSA DK +GK+Q ITI
Sbjct:  411 LITKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRASDNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITI 501
[Close]
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_SALTI (Chaperone protein dnaK OS=Salmonella typhi GN=dnaK PE=2 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 1.338e-28
Identity = 62/91 (68.13%), Postives = 75/91 (82.42%), Query Frame = 2 
Query:    5 IIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITI 277
            +I +NTT+PT  S+VFSTA D Q++V I+VLQGER+   DNKSLG F+LDGI PAPRG+PQIEV FDIDA+GIL VSA DK +GK+Q ITI
Sbjct:  411 LITKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRASDNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITI 501
[Close]
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_SALSV (Chaperone protein dnaK OS=Salmonella schwarzengrund (strain CVM19633) GN=dnaK PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.338e-28
Identity = 62/91 (68.13%), Postives = 75/91 (82.42%), Query Frame = 2 
Query:    5 IIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITI 277
            +I +NTT+PT  S+VFSTA D Q++V I+VLQGER+   DNKSLG F+LDGI PAPRG+PQIEV FDIDA+GIL VSA DK +GK+Q ITI
Sbjct:  411 LITKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRASDNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITI 501
[Close]
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_SALPK (Chaperone protein dnaK OS=Salmonella paratyphi A (strain AKU_12601) GN=dnaK PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.338e-28
Identity = 62/91 (68.13%), Postives = 75/91 (82.42%), Query Frame = 2 
Query:    5 IIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITI 277
            +I +NTT+PT  S+VFSTA D Q++V I+VLQGER+   DNKSLG F+LDGI PAPRG+PQIEV FDIDA+GIL VSA DK +GK+Q ITI
Sbjct:  411 LITKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRASDNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITI 501
[Close]
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_SALPC (Chaperone protein dnaK OS=Salmonella paratyphi C (strain RKS4594) GN=dnaK PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.338e-28
Identity = 62/91 (68.13%), Postives = 75/91 (82.42%), Query Frame = 2 
Query:    5 IIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITI 277
            +I +NTT+PT  S+VFSTA D Q++V I+VLQGER+   DNKSLG F+LDGI PAPRG+PQIEV FDIDA+GIL VSA DK +GK+Q ITI
Sbjct:  411 LITKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRASDNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITI 501
[Close]
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_SALPB (Chaperone protein dnaK OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=dnaK PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.338e-28
Identity = 62/91 (68.13%), Postives = 75/91 (82.42%), Query Frame = 2 
Query:    5 IIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITI 277
            +I +NTT+PT  S+VFSTA D Q++V I+VLQGER+   DNKSLG F+LDGI PAPRG+PQIEV FDIDA+GIL VSA DK +GK+Q ITI
Sbjct:  411 LITKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRASDNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITI 501
[Close]
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_SALPA (Chaperone protein dnaK OS=Salmonella paratyphi A GN=dnaK PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.338e-28
Identity = 62/91 (68.13%), Postives = 75/91 (82.42%), Query Frame = 2 
Query:    5 IIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITI 277
            +I +NTT+PT  S+VFSTA D Q++V I+VLQGER+   DNKSLG F+LDGI PAPRG+PQIEV FDIDA+GIL VSA DK +GK+Q ITI
Sbjct:  411 LITKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRASDNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITI 501
[Close]
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_SALNS (Chaperone protein dnaK OS=Salmonella newport (strain SL254) GN=dnaK PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.338e-28
Identity = 62/91 (68.13%), Postives = 75/91 (82.42%), Query Frame = 2 
Query:    5 IIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITI 277
            +I +NTT+PT  S+VFSTA D Q++V I+VLQGER+   DNKSLG F+LDGI PAPRG+PQIEV FDIDA+GIL VSA DK +GK+Q ITI
Sbjct:  411 LITKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRASDNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITI 501
The following BLAST results are available for this feature:
BLAST of CF504030 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_SHESW1.338e-2868.48Chaperone protein dnaK OS=Shewanella sp. (strain W... [more]
DNAK_SHEPC1.338e-2868.48Chaperone protein dnaK OS=Shewanella putrefaciens ... [more]
DNAK_SALTY1.338e-2868.13Chaperone protein dnaK OS=Salmonella typhimurium G... [more]
DNAK_SALTI1.338e-2868.13Chaperone protein dnaK OS=Salmonella typhi GN=dnaK... [more]
DNAK_SALSV1.338e-2868.13Chaperone protein dnaK OS=Salmonella schwarzengrun... [more]
DNAK_SALPK1.338e-2868.13Chaperone protein dnaK OS=Salmonella paratyphi A (... [more]
DNAK_SALPC1.338e-2868.13Chaperone protein dnaK OS=Salmonella paratyphi C (... [more]
DNAK_SALPB1.338e-2868.13Chaperone protein dnaK OS=Salmonella paratyphi B (... [more]
DNAK_SALPA1.338e-2868.13Chaperone protein dnaK OS=Salmonella paratyphi A G... [more]
DNAK_SALNS1.338e-2868.13Chaperone protein dnaK OS=Salmonella newport (stra... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-518 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504030 ID=CF504030; Name=CF504030; organism=Citrus sinensis; type=EST; length=286bp
CAAAATTATTCCTAGAAATACAACTTTGCCCACTTCCAAGTCAGAGGTGT
TCTCAACAGCTGCTGATGGTCAGACCAGTGTCGAGATCAATGTTCTCCAA
GGTGAAAGAGAATTCGTGAGGGACAACAAATCTCTTGGCAGCTTCCATCT
TGATGGCATCCCTCCAGCACCGCGTGGGGTTCCTCAAATTGAGGTTAAAT
TTGACATCGATGCCAATGGTATTCTTTCTGTCTCTGCTGTTGACAAAGGC
ACCGGAAAGAAACAAGACATCACCATTACTGGTGCT
back to top