CF504030

Overview
NameCF504030
Unique NameCF504030
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length286
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig514 contig Csv1_Contig514:1..286. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_SALHS (Chaperone protein dnaK OS=Salmonella heidelberg (strain SL476) GN=dnaK PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.338e-28
Identity = 62/91 (68.13%), Postives = 75/91 (82.42%), Query Frame = 2
Query:    5 IIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITI 277
            +I +NTT+PT  S+VFSTA D Q++V I+VLQGER+   DNKSLG F+LDGI PAPRG+PQIEV FDIDA+GIL VSA DK +GK+Q ITI
Sbjct:  411 LITKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRASDNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITI 501          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_SALG2 (Chaperone protein dnaK OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=dnaK PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.338e-28
Identity = 62/91 (68.13%), Postives = 75/91 (82.42%), Query Frame = 2
Query:    5 IIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITI 277
            +I +NTT+PT  S+VFSTA D Q++V I+VLQGER+   DNKSLG F+LDGI PAPRG+PQIEV FDIDA+GIL VSA DK +GK+Q ITI
Sbjct:  411 LITKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRASDNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITI 501          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_SALEP (Chaperone protein dnaK OS=Salmonella enteritidis PT4 (strain P125109) GN=dnaK PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.338e-28
Identity = 62/91 (68.13%), Postives = 75/91 (82.42%), Query Frame = 2
Query:    5 IIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITI 277
            +I +NTT+PT  S+VFSTA D Q++V I+VLQGER+   DNKSLG F+LDGI PAPRG+PQIEV FDIDA+GIL VSA DK +GK+Q ITI
Sbjct:  411 LITKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRASDNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITI 501          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_SALDC (Chaperone protein dnaK OS=Salmonella dublin (strain CT_02021853) GN=dnaK PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.338e-28
Identity = 62/91 (68.13%), Postives = 75/91 (82.42%), Query Frame = 2
Query:    5 IIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITI 277
            +I +NTT+PT  S+VFSTA D Q++V I+VLQGER+   DNKSLG F+LDGI PAPRG+PQIEV FDIDA+GIL VSA DK +GK+Q ITI
Sbjct:  411 LITKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRASDNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITI 501          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_SALCH (Chaperone protein dnaK OS=Salmonella choleraesuis GN=dnaK PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.338e-28
Identity = 62/91 (68.13%), Postives = 75/91 (82.42%), Query Frame = 2
Query:    5 IIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITI 277
            +I +NTT+PT  S+VFSTA D Q++V I+VLQGER+   DNKSLG F+LDGI PAPRG+PQIEV FDIDA+GIL VSA DK +GK+Q ITI
Sbjct:  411 LITKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRASDNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITI 501          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_SALAR (Chaperone protein dnaK OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=dnaK PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.338e-28
Identity = 62/91 (68.13%), Postives = 75/91 (82.42%), Query Frame = 2
Query:    5 IIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITI 277
            +I +NTT+PT  S+VFSTA D Q++V I+VLQGER+   DNKSLG F+LDGI PAPRG+PQIEV FDIDA+GIL VSA DK +GK+Q ITI
Sbjct:  411 LISKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRASDNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITI 501          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_SALA4 (Chaperone protein dnaK OS=Salmonella agona (strain SL483) GN=dnaK PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.338e-28
Identity = 62/91 (68.13%), Postives = 75/91 (82.42%), Query Frame = 2
Query:    5 IIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITI 277
            +I +NTT+PT  S+VFSTA D Q++V I+VLQGER+   DNKSLG F+LDGI PAPRG+PQIEV FDIDA+GIL VSA DK +GK+Q ITI
Sbjct:  411 LITKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRASDNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITI 501          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_RHOPS (Chaperone protein dnaK OS=Rhodopseudomonas palustris (strain BisB5) GN=dnaK PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.338e-28
Identity = 62/92 (67.39%), Postives = 71/92 (77.17%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITI 277
            +II RNTT+PT KS+VFSTA D Q +V I V QGERE   DNK LG F L GIPP+PRG+PQIEV FDIDANGI++VSA DK T K+Q I I
Sbjct:  405 RIIERNTTIPTKKSQVFSTAEDNQNAVTIRVFQGEREMAADNKILGQFDLMGIPPSPRGMPQIEVTFDIDANGIVNVSAKDKATSKEQQIRI 496          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_RHILW (Chaperone protein dnaK OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=dnaK PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.338e-28
Identity = 61/92 (66.30%), Postives = 71/92 (77.17%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITI 277
            ++I RNTT+PT KS+ FSTA D Q +V I V QGERE   DNK LG F L G+PP+PRG+PQIEV FDIDANGI+ VSA DKGTGK+Q I I
Sbjct:  405 RLIERNTTIPTKKSQTFSTAEDNQQAVTIRVSQGEREMAADNKLLGQFDLVGLPPSPRGMPQIEVTFDIDANGIVQVSAKDKGTGKEQQIRI 496          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_RHIL3 (Chaperone protein dnaK OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=dnaK PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.338e-28
Identity = 61/92 (66.30%), Postives = 71/92 (77.17%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITI 277
            ++I RNTT+PT KS+ FSTA D Q +V I V QGERE   DNK LG F L G+PP+PRG+PQIEV FDIDANGI+ VSA DKGTGK+Q I I
Sbjct:  405 RLIERNTTIPTKKSQTFSTAEDNQQAVTIRVSQGEREMAADNKLLGQFDLVGLPPSPRGMPQIEVTFDIDANGIVQVSAKDKGTGKEQQIRI 496          
The following BLAST results are available for this feature:
BLAST of CF504030 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_SALHS1.338e-2868.13Chaperone protein dnaK OS=Salmonella heidelberg (s... [more]
DNAK_SALG21.338e-2868.13Chaperone protein dnaK OS=Salmonella gallinarum (s... [more]
DNAK_SALEP1.338e-2868.13Chaperone protein dnaK OS=Salmonella enteritidis P... [more]
DNAK_SALDC1.338e-2868.13Chaperone protein dnaK OS=Salmonella dublin (strai... [more]
DNAK_SALCH1.338e-2868.13Chaperone protein dnaK OS=Salmonella choleraesuis ... [more]
DNAK_SALAR1.338e-2868.13Chaperone protein dnaK OS=Salmonella arizonae (str... [more]
DNAK_SALA41.338e-2868.13Chaperone protein dnaK OS=Salmonella agona (strain... [more]
DNAK_RHOPS1.338e-2867.39Chaperone protein dnaK OS=Rhodopseudomonas palustr... [more]
DNAK_RHILW1.338e-2866.30Chaperone protein dnaK OS=Rhizobium leguminosarum ... [more]
DNAK_RHIL31.338e-2866.30Chaperone protein dnaK OS=Rhizobium leguminosarum ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-518 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504030 ID=CF504030; Name=CF504030; organism=Citrus sinensis; type=EST; length=286bp
CAAAATTATTCCTAGAAATACAACTTTGCCCACTTCCAAGTCAGAGGTGT
TCTCAACAGCTGCTGATGGTCAGACCAGTGTCGAGATCAATGTTCTCCAA
GGTGAAAGAGAATTCGTGAGGGACAACAAATCTCTTGGCAGCTTCCATCT
TGATGGCATCCCTCCAGCACCGCGTGGGGTTCCTCAAATTGAGGTTAAAT
TTGACATCGATGCCAATGGTATTCTTTCTGTCTCTGCTGTTGACAAAGGC
ACCGGAAAGAAACAAGACATCACCATTACTGGTGCT
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