CF504033
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG1_DROME (Tubulin gamma-1 chain OS=Drosophila melanogaster GN=gammaTub23C PE=1 SV=2) HSP 1 Score: 90.5077 bits (223), Expect = 6.289e-18 Identity = 54/189 (28.57%), Postives = 96/189 (50.79%), Query Frame = 3 Query: 27 DRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSP-QVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQL------SVAEITNSAFEPSSM 572 D I + AD L+GF++ +++ Y KK F+V+P+ ++S VV+PYNS+L+ L D V+LDN A+ I L I+ P+++ +N LVS ++S T +LR+ +N ++ L+P P++HF+++ Y P+ S +QL +V ++ +P +M Sbjct: 120 DIIDREADGSDSLEGFILCHSIAGGTGSGMGSFIMERLADRYPKKLIQTFSVFPNQDEISDVVVQPYNSMLTLKRLTTAADSVVVLDNTALNRIACDRLHIQNPSFSQINNLVSTIMSVSTTTLRYPSYMNNNLIGLTAPLIPTPQLHFLMTGYTPLTSDSDIHTQQLVNVRKTTVLDVMRRLLQPKNM 308
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG_NEUCR (Tubulin gamma chain OS=Neurospora crassa GN=tub-4 PE=2 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 8.214e-18 Identity = 47/164 (28.66%), Postives = 88/164 (53.66%), Query Frame = 3 Query: 3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYP-SPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAP 491 +++ + ++ I + AD L+GF++ +++ + KK ++V+P + VV PYNS+L+ L ++ D V+LDN A+ I L ++ P++ N+LVS V+S+ T +LR+ G ++ D+ +L+P PR HF+++SY P Sbjct: 112 EQVHEEIMEMIEREADGSDSLEGFMMLHSIAGGTGSGLGSFLLERLNDRFPKKIIQTYSVFPDTTSAGDVVVHPYNSLLAMRRLTQNADSVVVLDNGALSHIAADRLHVQEPSFQQTNQLVSTVMSASTTTLRYPGYMHNDLVSILASLIPTPRCHFLMTSYTP 275
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG_EUPAE (Tubulin gamma chain OS=Euplotes aediculatus PE=2 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.073e-17 Identity = 52/169 (30.77%), Postives = 90/169 (53.25%), Query Frame = 3 Query: 3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEK 509 +++ D L+ I + AD L+GF++ +++ Y KK ++V+P + VV+PYN +LS L + D V+LDN A+ I L I +PT++ +N +VS V+++ T +LR+ G +N D+ +LVP PR HF+++ Y P+ +K Sbjct: 112 EKVQDEILEMIDREADGSDSLEGFVLTHSIAGGTGSGFGSYLLERINDHYPKKLIQTYSVFPIE--NDVVVQPYNCLLSIKRLTLNADCVVVLDNNALTSIAVDRLKILQPTFSQINSIVSTVMAASTTTLRYPGYMNNDMVGLIASLVPTPRCHFLMTGYTPLSLDQK 278
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG2_EUPOC (Tubulin gamma-2 chain OS=Euplotes octocarinatus PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.073e-17 Identity = 52/169 (30.77%), Postives = 90/169 (53.25%), Query Frame = 3 Query: 3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEK 509 +++ D L+ I + AD L+GF++ +++ Y KK ++V+P + VV+PYN +LS L + D V+LDN A+ I L I +PT++ +N +VS V+++ T +LR+ G +N D+ +LVP PR HF+++ Y P+ +K Sbjct: 112 EKVQDEILEMIDREADGSDSLEGFVLTHSIAGGTGSGFGSYLLERLNDHYPKKLIQTYSVFPIE--NDVVVQPYNCLLSIKRLTLNADCVVVLDNNALTSIAVDRLKILQPTFSQINSIVSTVMAASTTTLRYPGYMNNDMVGLIASLVPTPRCHFLMTGYTPLSLDQK 278
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG1_EUPOC (Tubulin gamma-1 chain OS=Euplotes octocarinatus PE=2 SV=2) HSP 1 Score: 89.7373 bits (221), Expect = 1.073e-17 Identity = 52/169 (30.77%), Postives = 90/169 (53.25%), Query Frame = 3 Query: 3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEK 509 +++ D L+ I + AD L+GF++ +++ Y KK ++V+P + VV+PYN +LS L + D V+LDN A+ I L I +PT++ +N +VS V+++ T +LR+ G +N D+ +LVP PR HF+++ Y P+ +K Sbjct: 112 EKVQDEILEMIDREADGSDSLEGFVLTHSIAGGTGSGFGSYLLERLNDHYPKKLIQTYSVFPIE--NDVVVQPYNCLLSIKRLTLNADCVVVLDNNALTSIAVDRLKILQPTFSQINSIVSTVMAASTTTLRYPGYMNNDMVGLIASLVPTPRCHFLMTGYTPLSLDQK 278
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG_RETFI (Tubulin gamma chain OS=Reticulomyxa filosa PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 4.077e-17 Identity = 49/177 (27.68%), Postives = 94/177 (53.11%), Query Frame = 3 Query: 48 DNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVV-EPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAP-VISAEKAFHEQLSVAEITNSAFEPSSM 572 DN L+GF++ +++ Y KK ++V+P+ +SVV PYNSVL+ L+ + D V++DN +++ I L ++ ++ N ++S V+++ T +LR+ G +N D+ +LVP PR HF+++S+ P VI + ++ SV ++ +P ++ Sbjct: 126 DNSDSLEGFVLTHSIAGGTGSGFGSHMLEQLTDRYPKKIIQTYSVFPNDSERSSVVVHPYNSVLALKRLILNADAVVVIDNTSLHRIADERLQLDFASFKETNSIISTVMAASTTTLRYPGYMNNDLVGLIASLVPTPRAHFLMTSFTPLVIKGAQRRIQKTSVLDVMRRLLQPKNI 302
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG_COCHE (Tubulin gamma chain (Fragment) OS=Cochliobolus heterostrophus GN=TUB4 PE=3 SV=2) HSP 1 Score: 87.4261 bits (215), Expect = 5.324e-17 Identity = 48/153 (31.37%), Postives = 81/153 (52.94%), Query Frame = 3 Query: 27 DRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSY 485 D I + AD L+GF++ +++ + KK ++V+P+ Q VV+PYNS+LS L ++ D V+LDN A+ I L + P++ N+LVS V+S+ T +LR+ + D+ +L+P PR HF+++SY Sbjct: 55 DMIDREADGSDSLEGFMMLHSIAGGTGSGLGSYMLERLNDRFPKKLIQTYSVFPNTQDGDIVVQPYNSLLSMRRLTQNADSVVVLDNGALTRIAADRLHVMTPSFEQTNQLVSTVMSASTTTLRYPAYSHNDLVGIVASLIPTPRCHFLMTSY 207
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG1_EUPCR (Tubulin gamma-1 chain OS=Euplotes crassus PE=2 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 5.324e-17 Identity = 48/164 (29.27%), Postives = 89/164 (54.27%), Query Frame = 3 Query: 3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV 494 +++ + ++ I + AD L+GF++ +++ Y KK ++V+P+ + VV+PYN +LS L+ + D V+LDN A+ I L + +PT+ +N +VS V+++ T +LR+ G +N D+ +LVP PR HF+++ Y P+ Sbjct: 112 EKVQEEIIEMIDREADGSDSLEGFVLTHSIAGGTGSGFGSYLLERLNDHYPKKLIQTYSVFPNE--NDVVVQPYNCLLSMKRLILNADCVVVLDNTALTSIAVDRLKLLQPTFPQINSIVSTVMAASTTTLRYPGYMNNDLVGLIASLVPTPRCHFLMTGYTPL 273
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG2_EUPCR (Tubulin gamma-2 chain OS=Euplotes crassus PE=2 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 6.954e-17 Identity = 49/157 (31.21%), Postives = 84/157 (53.50%), Query Frame = 3 Query: 24 LDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV 494 ++ I + AD L+GF++ +++ Y KK ++V+P+ + VV+PYN +LS L+ + D V+LDN AI I L + PT + +N +VS V+++ T +LR+ G +N D+ +LVP PR HF+++ Y P+ Sbjct: 119 IEMIDREADGSDSLEGFVLTHSIAGGTGSGFGSYLLEKLNDHYPKKLVQTYSVFPND--NDIVVQPYNCILSMKRLVLNADCVVVLDNTAITSIAVDRLKLLHPTISQVNSIVSTVMAASTTTLRYPGYMNNDLVGLIASLVPTPRCHFLMTGYTPL 273
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG_ENCCU (Tubulin gamma chain OS=Encephalitozoon cuniculi GN=TUB4 PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 9.082e-17 Identity = 47/162 (29.01%), Postives = 88/162 (54.32%), Query Frame = 3 Query: 24 LDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVV-EPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAE 506 +D I++ A+ C L+ FL+ +++ ++ KK ++++P+ S+ VV +PYNSVL+ H L+E++D V++DN ++ SL I PT+ ++N L+S V+++ T+++RF G + LVP + F++ SY P + E Sbjct: 112 IDMIQREAEGCDALETFLLLHSIAGGTGSGFGSLLLERIKEEFPKKIVQTYSIFPNNDESSDVVVQPYNSVLTLHRLIENSDCIVVMDNSSLGRYTLDSLRIGTPTFDHINLLISTVMAASTSTIRFPGYMYCTHQSINNCLVPLDPLKFVVPSYTPFVCDE 273 The following BLAST results are available for this feature:
BLAST of CF504033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 419
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504033 ID=CF504033; Name=CF504033; organism=Citrus sinensis; type=EST; length=574bpback to top |