CF504033

Overview
NameCF504033
Unique NameCF504033
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG_DICDI (Tubulin gamma chain OS=Dictyostelium discoideum GN=tubC PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.497e-19
Identity = 57/187 (30.48%), Postives = 98/187 (52.41%), Query Frame = 3
Query:   15 DLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV-ISAEKAFHEQLSVAEITNSAFEPSSM 572
            D   D I + AD    L+GFL+ +++                   + KK    ++V+P    S+ VV+ YNSVL+   L+E+ D  V+LDN A++ I   +L I++PT    N LVS V+S+ T +LR+ G +N D+     +L+P P+ HF+++ Y P+ I  +     + SV ++     +P ++
Sbjct:  116 DDIFDMIDREADGSESLEGFLLTHSISGGTGSGMGSYILERLNDRFPKKIIQTYSVFPDD--SSVVVQQYNSVLTLKRLIENADSTVVLDNNALHRIVGENLRIDQPTMDQTNSLVSTVMSASTTTLRYPGYMNNDLVGMLASLIPTPKCHFLITGYTPLSIDRQTESVRKTSVLDVMRRLLQPQNI 300          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG1_CANFA (Tubulin gamma-1 chain OS=Canis familiaris GN=TUBG1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.553e-19
Identity = 52/184 (28.26%), Postives = 100/184 (54.35%), Query Frame = 3
Query:   27 DRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSP-QVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEK-AFHEQLSVAEITNSAFEPSSM 572
            D I + AD    L+GF++ +++                   Y KK    ++V+P+  ++S  VV+PYNS+L+   L ++ D  V+LDN  +  I    L I+ P++  +N+LVS ++S+ T +LR+ G +N D+     +L+P PR+HF+++ Y P+ + +  A   + +V ++     +P ++
Sbjct:  120 DIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTTLNRIATNRLHIQNPSFFQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNV 303          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG2_DROME (Tubulin gamma-2 chain OS=Drosophila melanogaster GN=gammaTub37C PE=1 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 5.688e-19
Identity = 52/193 (26.94%), Postives = 102/193 (52.85%), Query Frame = 3
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSP-QVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVIS--AEKAFHEQLSVAEITNSAFEPSSM 572
            +++ +   D + + AD    L+GF++ +++                   + KK    ++V+P+  ++S  VV+PYNS+L+   L +  D  V+LDN A+  I    L I+ PT+T +N LVS ++S  T +LR+   +N ++     +L+P P++HF+++ Y P++S    K    + +V ++     +P +M
Sbjct:  112 EKVQEEVFDILDREADGSDSLEGFVLCHSIAGGTGSGMGSYVLERLSERFPKKLIQTYSVFPNQDEISDVVVQPYNSILTLKRLTKCADSVVVLDNTALNRIATERLHIQTPTFTQINNLVSTIMSLSTTTLRYPSYMNNNLIGLTASLIPTPQLHFLMTGYTPLMSDCETKTSVRKTTVLDVMRRLLQPKNM 304          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG2_ARATH (Tubulin gamma-2 chain OS=Arabidopsis thaliana GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.688e-19
Identity = 53/171 (30.99%), Postives = 89/171 (52.05%), Query Frame = 3
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSP-QVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKA 512
            K + +  +D I + AD    L+GF++ +++                   Y KK    ++V+P+  + S  VV+PYNS+L+   L  + D  V+LDN A+  I    L +  PT+   N LVS V+S+ T +LR+ G +N D+     +L+P PR HF+++ Y P+    +A
Sbjct:  112 KGVEEEIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLTNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQA 282          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG_PHYPA (Tubulin gamma chain OS=Physcomitrella patens GN=TUBG1 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.429e-19
Identity = 53/171 (30.99%), Postives = 90/171 (52.63%), Query Frame = 3
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSP-QVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKA 512
            +++ +  +D I + AD    L+GF++ +++                   Y KK    ++V+P+  + S  VV+PYNS+L+   L  + D  V+LDN A+  I    L I  PT+   N LVS V+S+ T +LR+ G +N D+     +L+P PR HF+++ Y P+    +A
Sbjct:  112 EQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHIPNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLVASLIPTPRCHFLMTGYTPLTVERQA 282          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG1_ARATH (Tubulin gamma-1 chain OS=Arabidopsis thaliana GN=TUBG1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.429e-19
Identity = 53/171 (30.99%), Postives = 89/171 (52.05%), Query Frame = 3
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSP-QVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKA 512
            K + +  +D I + AD    L+GF++ +++                   Y KK    ++V+P+  + S  VV+PYNS+L+   L  + D  V+LDN A+  I    L +  PT+   N LVS V+S+ T +LR+ G +N D+     +L+P PR HF+++ Y P+    +A
Sbjct:  112 KGVEEEIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALGRIAVERLHLTNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQA 282          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG_SCHJP (Tubulin gamma chain OS=Schizosaccharomyces japonicus GN=tug1 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.703e-19
Identity = 54/169 (31.95%), Postives = 91/169 (53.85%), Query Frame = 3
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQ-VSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAE 506
            ++I +  +D I + A+    L+GF + +++                   + KK    ++V+P+ + VS  VV+PYNS+L+   L  + D  V+LDN A+  I    L I+ PT+   N+LVS V+S+ T +LR+ G +N D+     +L+P PR HF+ +SY P  S +
Sbjct:  112 EKIFEDIVDMIDREAEGSDSLEGFSLLHSIAGGTGSGLGSYLLERLNDRFPKKIVQTYSVFPNNRSVSDVVVQPYNSLLTLKRLTLNADAVVVLDNAALAHIAADRLHIQNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPTPRCHFLSTSYTPFTSQQ 280          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG_CHLRE (Tubulin gamma chain OS=Chlamydomonas reinhardtii GN=TUBG PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.703e-19
Identity = 52/169 (30.77%), Postives = 90/169 (53.25%), Query Frame = 3
Query:    9 IVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVV-EPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKA 512
            + +  LD I + A+ C  L+GF + +++                   Y KK    ++V+P+   S+ VV +PYNS+L+   L  H D  V+LDN A+  I    L + +P    +N L++ V+++ T +LR+ G +N D+     +L+P PR HF+++ Y P ++AE A
Sbjct:  114 VQETLLDMIDREAEYCDSLEGFNMCHSIAGGTGSGMGSYMLELISDRYSKKLIQTYSVFPNQSESSDVVVQPYNSLLTLKRLTLHADAVVVLDNTALDKIAVERLHLHKPDVQQINSLIATVMAASTTTLRYPGYMNNDLVGLVASLIPTPRCHFLMTGYTP-LTAENA 281          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG_PLAFO (Tubulin gamma chain OS=Plasmodium falciparum (isolate NF54) GN=G-TUB PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.267e-18
Identity = 48/159 (30.19%), Postives = 88/159 (55.35%), Query Frame = 3
Query:   24 LDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYP--SPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV 494
            +D I +  DN   L+GF++ +++                  +Y KK    F+V+P  + + S  VV+PYNS+L+   L+  TD  V++DN ++  I    L +  PT+   N ++S V+S+ T +LR+ G++N D+    ++L+  P+ HF+++SY P+
Sbjct:  119 IDMIDREVDNSDNLEGFILSHSIAGGTGSGMGSYLLELLNDNYSKKMIQTFSVFPLLTNESSDVVVQPYNSILTLKRLILSTDSVVVIDNTSLNRIFVERLKLNNPTFQQTNTIISNVMSASTTTLRYPGSMNNDMISLISSLIINPKCHFLITSYTPI 277          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG_ANEPH (Tubulin gamma chain OS=Anemia phyllitidis GN=TUBG PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.289e-18
Identity = 53/172 (30.81%), Postives = 91/172 (52.91%), Query Frame = 3
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSP-QVSTSVVEPYNSVLSTHSLLE-HTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKA 512
            +++ +  +D I + AD    L+GF++ +++                   Y KK    ++V+P+  + S  VV+PYNS+L+ +  L  + D  V+LDN A+  I    L I  PT+   N LVS V+S+ T +LR+ G +N D+     +L+P PR HF+++ Y P+    +A
Sbjct:  112 EQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLNKRLTINADCVVVLDNTALNRIAVDRLHIPNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLVASLIPTPRCHFLMTGYTPLTVERQA 283          
The following BLAST results are available for this feature:
BLAST of CF504033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 419
Match NameE-valueIdentityDescription
TBG_DICDI1.497e-1930.48Tubulin gamma chain OS=Dictyostelium discoideum GN... [more]
TBG1_CANFA2.553e-1928.26Tubulin gamma-1 chain OS=Canis familiaris GN=TUBG1... [more]
TBG2_DROME5.688e-1926.94Tubulin gamma-2 chain OS=Drosophila melanogaster G... [more]
TBG2_ARATH5.688e-1930.99Tubulin gamma-2 chain OS=Arabidopsis thaliana GN=T... [more]
TBG_PHYPA7.429e-1930.99Tubulin gamma chain OS=Physcomitrella patens GN=TU... [more]
TBG1_ARATH7.429e-1930.99Tubulin gamma-1 chain OS=Arabidopsis thaliana GN=T... [more]
TBG_SCHJP9.703e-1931.95Tubulin gamma chain OS=Schizosaccharomyces japonic... [more]
TBG_CHLRE9.703e-1930.77Tubulin gamma chain OS=Chlamydomonas reinhardtii G... [more]
TBG_PLAFO1.267e-1830.19Tubulin gamma chain OS=Plasmodium falciparum (isol... [more]
TBG_ANEPH6.289e-1830.81Tubulin gamma chain OS=Anemia phyllitidis GN=TUBG ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-521 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504033 ID=CF504033; Name=CF504033; organism=Citrus sinensis; type=EST; length=574bp
GGAAGGAGATTGTTGATCTATGCTTGGACCGGATCAGAAAACTTGCTGAT
AATTGCACTGGGCTACAAGGGTTCCTGGTTTTCAATGCTGTTGGAGGTGG
TACTGGCTCTGGACTTGGGTCACTTCTCTTGGAGCGTCTCTCTGTTGACT
ATGGAAAGAAATCAAAGCTTGGTTTCACTGTGTATCCTTCACCTCAGGTT
TCCACATCAGTTGTGGAACCTTACAACAGTGTTCTTTCAACACATTCCCT
CCTTGAGCACACCGATGTTGCTGTGCTTCTTGATAATGAAGCCATCTATG
ATATCTGCAGGCGCTCTCTTGACATTGAGCGCCCCACTTACACCAATCTC
AACCGACTTGTCTCTCAGGTGATCTCATCCCTCACTGCCTCTTTGAGGTT
TGATGGAGCTCTGAATGTGGATGTGACTGAGTTCCAGACCAATTTGGTTC
CCTATCCAAGGATCCATTTCATGCTCTCCTCTTATGCCCCAGTTATCTCT
GCAGAGAAGGCATTCCATGAGCAACTTTCAGTTGCTGAGATCACCAACAG
TGCTTTTGAGCCATCATCCATGAT
back to top