CF504033

Overview
NameCF504033
Unique NameCF504033
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG1_DROME (Tubulin gamma-1 chain OS=Drosophila melanogaster GN=gammaTub23C PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 6.289e-18
Identity = 54/189 (28.57%), Postives = 96/189 (50.79%), Query Frame = 3
Query:   27 DRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSP-QVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQL------SVAEITNSAFEPSSM 572
            D I + AD    L+GF++ +++                   Y KK    F+V+P+  ++S  VV+PYNS+L+   L    D  V+LDN A+  I    L I+ P+++ +N LVS ++S  T +LR+   +N ++      L+P P++HF+++ Y P+ S      +QL      +V ++     +P +M
Sbjct:  120 DIIDREADGSDSLEGFILCHSIAGGTGSGMGSFIMERLADRYPKKLIQTFSVFPNQDEISDVVVQPYNSMLTLKRLTTAADSVVVLDNTALNRIACDRLHIQNPSFSQINNLVSTIMSVSTTTLRYPSYMNNNLIGLTAPLIPTPQLHFLMTGYTPLTSDSDIHTQQLVNVRKTTVLDVMRRLLQPKNM 308          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG_NEUCR (Tubulin gamma chain OS=Neurospora crassa GN=tub-4 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.214e-18
Identity = 47/164 (28.66%), Postives = 88/164 (53.66%), Query Frame = 3
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYP-SPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAP 491
            +++ +  ++ I + AD    L+GF++ +++                   + KK    ++V+P +      VV PYNS+L+   L ++ D  V+LDN A+  I    L ++ P++   N+LVS V+S+ T +LR+ G ++ D+     +L+P PR HF+++SY P
Sbjct:  112 EQVHEEIMEMIEREADGSDSLEGFMMLHSIAGGTGSGLGSFLLERLNDRFPKKIIQTYSVFPDTTSAGDVVVHPYNSLLAMRRLTQNADSVVVLDNGALSHIAADRLHVQEPSFQQTNQLVSTVMSASTTTLRYPGYMHNDLVSILASLIPTPRCHFLMTSYTP 275          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG_EUPAE (Tubulin gamma chain OS=Euplotes aediculatus PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.073e-17
Identity = 52/169 (30.77%), Postives = 90/169 (53.25%), Query Frame = 3
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEK 509
            +++ D  L+ I + AD    L+GF++ +++                   Y KK    ++V+P    +  VV+PYN +LS   L  + D  V+LDN A+  I    L I +PT++ +N +VS V+++ T +LR+ G +N D+     +LVP PR HF+++ Y P+   +K
Sbjct:  112 EKVQDEILEMIDREADGSDSLEGFVLTHSIAGGTGSGFGSYLLERINDHYPKKLIQTYSVFPIE--NDVVVQPYNCLLSIKRLTLNADCVVVLDNNALTSIAVDRLKILQPTFSQINSIVSTVMAASTTTLRYPGYMNNDMVGLIASLVPTPRCHFLMTGYTPLSLDQK 278          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG2_EUPOC (Tubulin gamma-2 chain OS=Euplotes octocarinatus PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.073e-17
Identity = 52/169 (30.77%), Postives = 90/169 (53.25%), Query Frame = 3
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEK 509
            +++ D  L+ I + AD    L+GF++ +++                   Y KK    ++V+P    +  VV+PYN +LS   L  + D  V+LDN A+  I    L I +PT++ +N +VS V+++ T +LR+ G +N D+     +LVP PR HF+++ Y P+   +K
Sbjct:  112 EKVQDEILEMIDREADGSDSLEGFVLTHSIAGGTGSGFGSYLLERLNDHYPKKLIQTYSVFPIE--NDVVVQPYNCLLSIKRLTLNADCVVVLDNNALTSIAVDRLKILQPTFSQINSIVSTVMAASTTTLRYPGYMNNDMVGLIASLVPTPRCHFLMTGYTPLSLDQK 278          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG1_EUPOC (Tubulin gamma-1 chain OS=Euplotes octocarinatus PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.073e-17
Identity = 52/169 (30.77%), Postives = 90/169 (53.25%), Query Frame = 3
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEK 509
            +++ D  L+ I + AD    L+GF++ +++                   Y KK    ++V+P    +  VV+PYN +LS   L  + D  V+LDN A+  I    L I +PT++ +N +VS V+++ T +LR+ G +N D+     +LVP PR HF+++ Y P+   +K
Sbjct:  112 EKVQDEILEMIDREADGSDSLEGFVLTHSIAGGTGSGFGSYLLERLNDHYPKKLIQTYSVFPIE--NDVVVQPYNCLLSIKRLTLNADCVVVLDNNALTSIAVDRLKILQPTFSQINSIVSTVMAASTTTLRYPGYMNNDMVGLIASLVPTPRCHFLMTGYTPLSLDQK 278          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG_RETFI (Tubulin gamma chain OS=Reticulomyxa filosa PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.077e-17
Identity = 49/177 (27.68%), Postives = 94/177 (53.11%), Query Frame = 3
Query:   48 DNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVV-EPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAP-VISAEKAFHEQLSVAEITNSAFEPSSM 572
            DN   L+GF++ +++                   Y KK    ++V+P+    +SVV  PYNSVL+   L+ + D  V++DN +++ I    L ++  ++   N ++S V+++ T +LR+ G +N D+     +LVP PR HF+++S+ P VI   +   ++ SV ++     +P ++
Sbjct:  126 DNSDSLEGFVLTHSIAGGTGSGFGSHMLEQLTDRYPKKIIQTYSVFPNDSERSSVVVHPYNSVLALKRLILNADAVVVIDNTSLHRIADERLQLDFASFKETNSIISTVMAASTTTLRYPGYMNNDLVGLIASLVPTPRAHFLMTSFTPLVIKGAQRRIQKTSVLDVMRRLLQPKNI 302          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG_COCHE (Tubulin gamma chain (Fragment) OS=Cochliobolus heterostrophus GN=TUB4 PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 5.324e-17
Identity = 48/153 (31.37%), Postives = 81/153 (52.94%), Query Frame = 3
Query:   27 DRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSY 485
            D I + AD    L+GF++ +++                   + KK    ++V+P+ Q    VV+PYNS+LS   L ++ D  V+LDN A+  I    L +  P++   N+LVS V+S+ T +LR+    + D+     +L+P PR HF+++SY
Sbjct:   55 DMIDREADGSDSLEGFMMLHSIAGGTGSGLGSYMLERLNDRFPKKLIQTYSVFPNTQDGDIVVQPYNSLLSMRRLTQNADSVVVLDNGALTRIAADRLHVMTPSFEQTNQLVSTVMSASTTTLRYPAYSHNDLVGIVASLIPTPRCHFLMTSY 207          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG1_EUPCR (Tubulin gamma-1 chain OS=Euplotes crassus PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.324e-17
Identity = 48/164 (29.27%), Postives = 89/164 (54.27%), Query Frame = 3
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV 494
            +++ +  ++ I + AD    L+GF++ +++                   Y KK    ++V+P+   +  VV+PYN +LS   L+ + D  V+LDN A+  I    L + +PT+  +N +VS V+++ T +LR+ G +N D+     +LVP PR HF+++ Y P+
Sbjct:  112 EKVQEEIIEMIDREADGSDSLEGFVLTHSIAGGTGSGFGSYLLERLNDHYPKKLIQTYSVFPNE--NDVVVQPYNCLLSMKRLILNADCVVVLDNTALTSIAVDRLKLLQPTFPQINSIVSTVMAASTTTLRYPGYMNNDLVGLIASLVPTPRCHFLMTGYTPL 273          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG2_EUPCR (Tubulin gamma-2 chain OS=Euplotes crassus PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.954e-17
Identity = 49/157 (31.21%), Postives = 84/157 (53.50%), Query Frame = 3
Query:   24 LDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV 494
            ++ I + AD    L+GF++ +++                   Y KK    ++V+P+   +  VV+PYN +LS   L+ + D  V+LDN AI  I    L +  PT + +N +VS V+++ T +LR+ G +N D+     +LVP PR HF+++ Y P+
Sbjct:  119 IEMIDREADGSDSLEGFVLTHSIAGGTGSGFGSYLLEKLNDHYPKKLVQTYSVFPND--NDIVVQPYNCILSMKRLVLNADCVVVLDNTAITSIAVDRLKLLHPTISQVNSIVSTVMAASTTTLRYPGYMNNDLVGLIASLVPTPRCHFLMTGYTPL 273          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG_ENCCU (Tubulin gamma chain OS=Encephalitozoon cuniculi GN=TUB4 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.082e-17
Identity = 47/162 (29.01%), Postives = 88/162 (54.32%), Query Frame = 3
Query:   24 LDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVV-EPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAE 506
            +D I++ A+ C  L+ FL+ +++                  ++ KK    ++++P+   S+ VV +PYNSVL+ H L+E++D  V++DN ++      SL I  PT+ ++N L+S V+++ T+++RF G +          LVP   + F++ SY P +  E
Sbjct:  112 IDMIQREAEGCDALETFLLLHSIAGGTGSGFGSLLLERIKEEFPKKIVQTYSIFPNNDESSDVVVQPYNSVLTLHRLIENSDCIVVMDNSSLGRYTLDSLRIGTPTFDHINLLISTVMAASTSTIRFPGYMYCTHQSINNCLVPLDPLKFVVPSYTPFVCDE 273          
The following BLAST results are available for this feature:
BLAST of CF504033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 419
Match NameE-valueIdentityDescription
TBG1_DROME6.289e-1828.57Tubulin gamma-1 chain OS=Drosophila melanogaster G... [more]
TBG_NEUCR8.214e-1828.66Tubulin gamma chain OS=Neurospora crassa GN=tub-4 ... [more]
TBG_EUPAE1.073e-1730.77Tubulin gamma chain OS=Euplotes aediculatus PE=2 S... [more]
TBG2_EUPOC1.073e-1730.77Tubulin gamma-2 chain OS=Euplotes octocarinatus PE... [more]
TBG1_EUPOC1.073e-1730.77Tubulin gamma-1 chain OS=Euplotes octocarinatus PE... [more]
TBG_RETFI4.077e-1727.68Tubulin gamma chain OS=Reticulomyxa filosa PE=2 SV... [more]
TBG_COCHE5.324e-1731.37Tubulin gamma chain (Fragment) OS=Cochliobolus het... [more]
TBG1_EUPCR5.324e-1729.27Tubulin gamma-1 chain OS=Euplotes crassus PE=2 SV=... [more]
TBG2_EUPCR6.954e-1731.21Tubulin gamma-2 chain OS=Euplotes crassus PE=2 SV=... [more]
TBG_ENCCU9.082e-1729.01Tubulin gamma chain OS=Encephalitozoon cuniculi GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-521 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504033 ID=CF504033; Name=CF504033; organism=Citrus sinensis; type=EST; length=574bp
GGAAGGAGATTGTTGATCTATGCTTGGACCGGATCAGAAAACTTGCTGAT
AATTGCACTGGGCTACAAGGGTTCCTGGTTTTCAATGCTGTTGGAGGTGG
TACTGGCTCTGGACTTGGGTCACTTCTCTTGGAGCGTCTCTCTGTTGACT
ATGGAAAGAAATCAAAGCTTGGTTTCACTGTGTATCCTTCACCTCAGGTT
TCCACATCAGTTGTGGAACCTTACAACAGTGTTCTTTCAACACATTCCCT
CCTTGAGCACACCGATGTTGCTGTGCTTCTTGATAATGAAGCCATCTATG
ATATCTGCAGGCGCTCTCTTGACATTGAGCGCCCCACTTACACCAATCTC
AACCGACTTGTCTCTCAGGTGATCTCATCCCTCACTGCCTCTTTGAGGTT
TGATGGAGCTCTGAATGTGGATGTGACTGAGTTCCAGACCAATTTGGTTC
CCTATCCAAGGATCCATTTCATGCTCTCCTCTTATGCCCCAGTTATCTCT
GCAGAGAAGGCATTCCATGAGCAACTTTCAGTTGCTGAGATCACCAACAG
TGCTTTTGAGCCATCATCCATGAT
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