CF504033

Overview
NameCF504033
Unique NameCF504033
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBA2_CHICK (Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 7.080e-70
Identity = 124/189 (65.61%), Postives = 157/189 (83.07%), Query Frame = 3
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSS 569
            K+ VD+  DRIRKLAD+C+GLQGFL+F++                  V+YGKKSKL F +YP+PQ S++VVEPYNSVL+TH+ LEH+D   ++DNEAIYDIC R+LDIERPTYTNLNRL+SQ++SS+TASLRFDGALNVD+TEFQTNLVP+PRIHF L +YAP+IS+++A+HEQLSVAEIT+S FEP++
Sbjct:  109 KDKVDMVSDRIRKLADSCSGLQGFLIFHSFGGGTGSGFTSLLMERLSVEYGKKSKLEFAIYPAPQASSAVVEPYNSVLTTHTTLEHSDCVFMVDNEAIYDICHRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPFPRIHFPLVTYAPIISSDRAYHEQLSVAEITSSCFEPNN 297          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBA2_HOMAM (Tubulin alpha-2 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 1.577e-69
Identity = 122/189 (64.55%), Postives = 154/189 (81.48%), Query Frame = 3
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSS 569
            KE VD+ LDRIRKLAD CTGLQGFL+F +                  V+YGKKSKL   +YP+PQ +TSVVEPYNS+L+TH+ LEH+D   ++DNEAI+DIC+R+LD+ RPTYTNLNRL+ Q++SS+TASLRF+GALNVD+TEFQTNLVPYPRIHF L++Y+P+ISAEKA+HEQLSV EIT++ FEP++
Sbjct:  112 KEYVDIVLDRIRKLADQCTGLQGFLIFRSFGGGTGSGFASLLMERLSVEYGKKSKLEIAIYPAPQSATSVVEPYNSILTTHTTLEHSDCCFMVDNEAIFDICQRNLDVSRPTYTNLNRLIGQIVSSITASLRFEGALNVDLTEFQTNLVPYPRIHFPLTTYSPIISAEKAYHEQLSVGEITSACFEPAN 300          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBA_DICDI (Tubulin alpha chain OS=Dictyostelium discoideum GN=tubA PE=1 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 2.518e-67
Identity = 125/191 (65.45%), Postives = 153/191 (80.10%), Query Frame = 3
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYG-KKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            KE++D+C+DRIR+LAD C GLQGFLVF++V                 +DYG KKSKL F VYPSPQVSTSVVEPYNSVLSTHSLLEHTDV+ +LDNEAIY+IC+ SLDIE+PTYTNLNRL++QVISSLT+SLRF G LN+D+ + QTNLVP+PR+HF+L SYAPVIS EKA HE ++V  IT++ F   ++
Sbjct:  118 KELIDVCVDRIRRLADQCDGLQGFLVFHSVGGGTGSGFGSLLLQKLALDYGGKKSKLDFCVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSFMLDNEAIYNICKNSLDIEKPTYTNLNRLIAQVISSLTSSLRFPGQLNLDINDIQTNLVPFPRLHFVLCSYAPVISREKAHHETITVDNITSAVFSEKNI 308          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBA_DICPU (Tubulin alpha chain (Fragment) OS=Dictyostelium purpureum GN=tuba PE=3 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 3.289e-67
Identity = 125/191 (65.45%), Postives = 154/191 (80.63%), Query Frame = 3
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYG-KKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            KE++++C DRIRKLAD C GLQGFLVF++V                 ++YG KKSKL F VYPSPQVSTSVVEPYNSVLSTHSLLEHTDV+ +LDNEAIY+IC++SLDIE+PTYTNLNRL++QVISSLT+SLRF G LN+D+ + QTNLVP+PR+HF+L SYAPVIS EK+ HE ++V  ITNS F  +++
Sbjct:   20 KELIEVCADRIRKLADQCEGLQGFLVFHSVGGGTGSGFGSLLLQRLALEYGGKKSKLDFCVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSFMLDNEAIYNICKKSLDIEKPTYTNLNRLIAQVISSLTSSLRFPGPLNLDINDIQTNLVPFPRLHFVLCSYAPVISKEKSEHENITVDAITNSVFSENNI 210          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBA8_CHICK (Tubulin alpha-8 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 3.289e-67
Identity = 120/174 (68.97%), Postives = 145/174 (83.33%), Query Frame = 3
Query:   48 DNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSS 569
            D CTGLQGFL+F++                  VDYGKKSKL F +YP+PQVST+VVEPYNS+L+TH+ LE +D A ++DNEAIYDICRR+LDIERPTYTNLNRL+ Q++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +Y+P+ISAEKA+HEQLSV+EITN+ FEPS+
Sbjct:    2 DQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEQSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYSPIISAEKAYHEQLSVSEITNACFEPSN 175          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBA4_CHICK (Tubulin alpha-4 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 7.327e-67
Identity = 120/175 (68.57%), Postives = 147/175 (84.00%), Query Frame = 3
Query:   45 ADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSS 569
            AD C+GLQGFL+F++                  VDYGKKSKL F +YP+PQVST+VVEPYNS+L+TH+ LEH+D A ++DNEAIYDIC R+LDIERPTYTNLNRL+SQ++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAP+IS+E+A+HEQLSVAEIT+S FEP++
Sbjct:    1 ADACSGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICCRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISSERAYHEQLSVAEITSSCFEPNN 175          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBA2_NEUCR (Tubulin alpha-B chain OS=Neurospora crassa GN=tba-2 PE=2 SV=2)

HSP 1 Score: 249.98 bits (637), Expect = 6.202e-66
Identity = 120/189 (63.49%), Postives = 149/189 (78.84%), Query Frame = 3
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSS 569
            KE++D  LD++R++ADNC+GLQGFLVF++                  VDYGKKSKL F VYP+PQ +TSVVEPYNS+L+TH+ LEH D + ++DNEAIYDICRR+L +ERP Y NLNRL++QV+SS+TASLRFDG+LNVD+ EFQTNLVPYPRIHF L +YAPVISA KA HE  SV E+T S FEP++
Sbjct:  112 KELIDQVLDKVRRVADNCSGLQGFLVFHSFGGGTGSGFGALLMERLSVDYGKKSKLEFCVYPAPQTATSVVEPYNSILTTHTTLEHADCSFMVDNEAIYDICRRNLGLERPNYENLNRLIAQVVSSITASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVAYAPVISAAKAAHEANSVQEMTMSCFEPNN 300          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBA_MYCGR (Tubulin alpha chain OS=Mycosphaerella graminicola PE=3 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 8.101e-66
Identity = 120/189 (63.49%), Postives = 149/189 (78.84%), Query Frame = 3
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSS 569
            KE++D  LD++R +ADNC+GLQGFLVF++                  VDYGKK KL F VYP+PQV+TSVVEPYNS+L+TH+ LEH+D + ++DNEAIYDICRR+L IERP Y NLNRL++QV+SS+TASLRFDG+LNVD+ EFQTNLVPYPRIHF L +YAP++SA KA HE  SV EI+ S FEP+S
Sbjct:  112 KELIDQVLDKVRHVADNCSGLQGFLVFHSFGGGTGSGFGALLMERLSVDYGKKCKLEFCVYPAPQVATSVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLGIERPNYENLNRLIAQVVSSITASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVAYAPIVSAAKAAHEANSVQEISMSCFEPNS 300          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBA1_SCHPO (Tubulin alpha-1 chain OS=Schizosaccharomyces pombe GN=nda2 PE=2 SV=2)

HSP 1 Score: 249.21 bits (635), Expect = 1.058e-65
Identity = 119/187 (63.64%), Postives = 149/187 (79.68%), Query Frame = 3
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEP 563
            KE++D  L+RIR++ADNC+GLQGFLVF++                  ++YGKKS L F+VYP+PQVSTSVVEPYNSVL+TH+ L+++D   ++DNEA YDICRR+LDIERPTY NLNRL++QV+SS+TASLRF G+LNVD+ EFQTNLVPYPRIHF L +Y+P++SA KAFHE  SV EITN  FEP
Sbjct:  116 KEMIDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEP 302          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBA_GIBZE (Tubulin alpha chain OS=Gibberella zeae GN=TUB1 PE=3 SV=2)

HSP 1 Score: 248.44 bits (633), Expect = 1.805e-65
Identity = 120/189 (63.49%), Postives = 149/189 (78.84%), Query Frame = 3
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSS 569
            KE++D  LD+IR++ADNC GLQGFLVF++                  VDYGKKSKL F VYP+PQ +TSVVEPYNS+L+TH+ LEH+D + ++DNEAIYDICRR+L +ERP Y NLNRL++QV+SS+TASLRFDG+LNVD+ EFQTNLVPYPRIHF L +Y+PVISA KA HE  SV E+T S FEP++
Sbjct:  112 KELIDGVLDKIRRVADNCAGLQGFLVFHSFGGGTGSGFGALLMERLSVDYGKKSKLEFCVYPAPQTATSVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLGLERPNYENLNRLIAQVVSSITASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVAYSPVISAAKAAHEANSVQEMTMSCFEPNN 300          
The following BLAST results are available for this feature:
BLAST of CF504033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 419
Match NameE-valueIdentityDescription
TBA2_CHICK7.080e-7065.61Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1[more]
TBA2_HOMAM1.577e-6964.55Tubulin alpha-2 chain OS=Homarus americanus PE=2 S... [more]
TBA_DICDI2.518e-6765.45Tubulin alpha chain OS=Dictyostelium discoideum GN... [more]
TBA_DICPU3.289e-6765.45Tubulin alpha chain (Fragment) OS=Dictyostelium pu... [more]
TBA8_CHICK3.289e-6768.97Tubulin alpha-8 chain (Fragment) OS=Gallus gallus ... [more]
TBA4_CHICK7.327e-6768.57Tubulin alpha-4 chain (Fragment) OS=Gallus gallus ... [more]
TBA2_NEUCR6.202e-6663.49Tubulin alpha-B chain OS=Neurospora crassa GN=tba-... [more]
TBA_MYCGR8.101e-6663.49Tubulin alpha chain OS=Mycosphaerella graminicola ... [more]
TBA1_SCHPO1.058e-6563.64Tubulin alpha-1 chain OS=Schizosaccharomyces pombe... [more]
TBA_GIBZE1.805e-6563.49Tubulin alpha chain OS=Gibberella zeae GN=TUB1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-521 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504033 ID=CF504033; Name=CF504033; organism=Citrus sinensis; type=EST; length=574bp
GGAAGGAGATTGTTGATCTATGCTTGGACCGGATCAGAAAACTTGCTGAT
AATTGCACTGGGCTACAAGGGTTCCTGGTTTTCAATGCTGTTGGAGGTGG
TACTGGCTCTGGACTTGGGTCACTTCTCTTGGAGCGTCTCTCTGTTGACT
ATGGAAAGAAATCAAAGCTTGGTTTCACTGTGTATCCTTCACCTCAGGTT
TCCACATCAGTTGTGGAACCTTACAACAGTGTTCTTTCAACACATTCCCT
CCTTGAGCACACCGATGTTGCTGTGCTTCTTGATAATGAAGCCATCTATG
ATATCTGCAGGCGCTCTCTTGACATTGAGCGCCCCACTTACACCAATCTC
AACCGACTTGTCTCTCAGGTGATCTCATCCCTCACTGCCTCTTTGAGGTT
TGATGGAGCTCTGAATGTGGATGTGACTGAGTTCCAGACCAATTTGGTTC
CCTATCCAAGGATCCATTTCATGCTCTCCTCTTATGCCCCAGTTATCTCT
GCAGAGAAGGCATTCCATGAGCAACTTTCAGTTGCTGAGATCACCAACAG
TGCTTTTGAGCCATCATCCATGAT
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