CF504033

Overview
NameCF504033
Unique NameCF504033
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBA1_EMENI (Tubulin alpha-1 chain OS=Emericella nidulans GN=tubA PE=3 SV=2)

HSP 1 Score: 248.44 bits (633), Expect = 1.805e-65
Identity = 119/189 (62.96%), Postives = 152/189 (80.42%), Query Frame = 3
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSS 569
            KE++D  LD++R++AD+C+GLQGFLVF++                  VDYGKKSKL F VYP+PQ +TSVVEPYNS+L+TH+ LEH+D + ++DNEAIYDICRR+L IERP+Y NLNRL++QV+SS+TASLRFDG+LNVD+ EFQTNLVPYPRIHF L +Y+PVISA+KA HE  SV +IT S FEP++
Sbjct:  112 KEMIDQVLDKVRRMADSCSGLQGFLVFHSFGGGTGSGFGALLMERLSVDYGKKSKLEFCVYPAPQNATSVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLGIERPSYENLNRLIAQVVSSITASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVAYSPVISADKASHEANSVQDITMSCFEPNN 300          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBA8_CAEEL (Tubulin alpha-8 chain OS=Caenorhabditis elegans GN=tba-8 PE=2 SV=2)

HSP 1 Score: 245.743 bits (626), Expect = 1.170e-64
Identity = 117/189 (61.90%), Postives = 152/189 (80.42%), Query Frame = 3
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSS 569
            KE++D+ LDRIRK  +NC GLQGFLVF++                  V++GKKSKL F+VYP+PQVSTSVVEPYNS+L+TH+ LE +D + ++DNEAIYD+CR+ L +ERP+Y+NLNRL++QV+SS+TASLRFDGALNVD+ EFQTNLVPYPRIHF L++YAPVISA++A HE LSV +IT+  FE ++
Sbjct:  115 KELIDVVLDRIRKQTENCEGLQGFLVFHSFGGGTGSGFSSLLMERLSVEFGKKSKLEFSVYPAPQVSTSVVEPYNSILTTHTTLELSDCSFMVDNEAIYDLCRQKLHVERPSYSNLNRLIAQVVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPVISADRAHHEPLSVQDITHMCFEKAN 303          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBA2_SCHPO (Tubulin alpha-2 chain OS=Schizosaccharomyces pombe GN=tub1 PE=1 SV=2)

HSP 1 Score: 244.973 bits (624), Expect = 1.995e-64
Identity = 118/187 (63.10%), Postives = 147/187 (78.61%), Query Frame = 3
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEP 563
            KE+VD   D+IR++ADNC+GLQGFLVF++                  ++Y KKSKL F+VYP+PQVSTSVVEPYNSVL+TH+ L+  D   ++DNE+ YDICRR+LDIERP+Y NLNRL++QV+SS+TASLRF+G+LNVD+ EFQTNLVPYPRIHF L +YAP++SA KAFHE  SV EITN  FEP
Sbjct:  112 KELVDEVTDKIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTHATLDLADCTFMVDNESCYDICRRNLDIERPSYENLNRLIAQVVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEP 298          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBA1_YEAST (Tubulin alpha-1 chain OS=Saccharomyces cerevisiae GN=TUB1 PE=1 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 2.881e-63
Identity = 117/189 (61.90%), Postives = 145/189 (76.72%), Query Frame = 3
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSS 569
            +EI+   LDRIRKLAD C GLQGFL  +++                  +YGKKSKL F VYP+PQVSTSVVEPYN+VL+TH+ LEH D   ++DNEAIYD+C+R+LDI RP++ NLN L++QV+SS+TASLRFDG+LNVD+ EFQTNLVPYPRIHF L SY+PV+S  KAFHE  SV+EITN+ FEP +
Sbjct:  113 REILGDVLDRIRKLADQCDGLQGFLFTHSLGGGTGSGLGSLLLEELSAEYGKKSKLEFAVYPAPQVSTSVVEPYNTVLTTHTTLEHADCTFMVDNEAIYDMCKRNLDIPRPSFANLNNLIAQVVSSVTASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVSYSPVLSKSKAFHESNSVSEITNACFEPGN 301          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBA_SORMA (Tubulin alpha chain OS=Sordaria macrospora GN=TUBA PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 8.383e-63
Identity = 116/189 (61.38%), Postives = 147/189 (77.78%), Query Frame = 3
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSS 569
            KE++D  LD++R++ADNC+GLQGFLVF++                  VDYGKKSKL F VYP+PQ +TSVVEPY++ L+T++ LE  D + ++DNEAIYDICRR+L +ERP Y NLNRL++QV+SS+TASLRFDG+LNVD+ EFQTNLVPYPRIHF L +YAPVISA KA HE  SV E+T S FEP++
Sbjct:  112 KELIDQVLDKVRRVADNCSGLQGFLVFHSFGGGTGSGFGALLMERLSVDYGKKSKLEFCVYPAPQTATSVVEPYHNFLTTNTTLEQADCSFMVDNEAIYDICRRNLGLERPNYENLNRLIAQVVSSITASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVAYAPVISAAKAAHEANSVQEMTMSCFEPNN 300          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBA_ASHGO (Tubulin alpha chain OS=Ashbya gossypii GN=TUB1 PE=3 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.095e-62
Identity = 113/189 (59.79%), Postives = 145/189 (76.72%), Query Frame = 3
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSS 569
            +E++D  LDRIRK++D C GLQGFL  +++                 +DYGKKSKL F VYP+PQVSTSVVEPYN+VL+TH+ LEH D   ++DNEAIY++C+++LDI RP++ NLN L++QV+SS+TASLRFDG+LNVD+ EFQTNLVPYPRIHF L SYAP++S  KA HE  SV EITN+ FEP +
Sbjct:  114 RELLDDILDRIRKISDQCDGLQGFLFTHSLGGGTGSGLGSLLLEQLSIDYGKKSKLEFAVYPAPQVSTSVVEPYNTVLTTHTTLEHADCTFMVDNEAIYEMCKKNLDISRPSFANLNNLIAQVVSSVTASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVSYAPILSKSKAHHESNSVGEITNACFEPGN 302          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBA3_CHICK (Tubulin alpha-3 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 5.434e-62
Identity = 115/175 (65.71%), Postives = 141/175 (80.57%), Query Frame = 3
Query:   45 ADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSS 569
            AD C+GLQGFLVF++                  V+Y KKSKL F+VYP  QVST+VVEPYNS+L+TH+ LEH+D + ++DNEAIYDIC R+LDIERPTYTNLNRL+ Q++SS+TASLRF+GALNVD+ EFQTNLVPYPRIHF L++YA +ISAEKA+HEQLSV EITN+ FE S+
Sbjct:    1 ADQCSGLQGFLVFHSFGGGTGSGFTSLLMERLSVEYSKKSKLEFSVYPDRQVSTAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICNRNLDIERPTYTNLNRLIGQIVSSVTASLRFNGALNVDLIEFQTNLVPYPRIHFPLTTYARIISAEKAYHEQLSVPEITNACFEFSN 175          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBA_CANAL (Tubulin alpha chain OS=Candida albicans GN=TUB1 PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 9.268e-62
Identity = 114/189 (60.32%), Postives = 144/189 (76.19%), Query Frame = 3
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSS 569
            +EI+D  LDR+R+++D C GLQGFL  +++                 +DYGKKSKL F VYP+PQVSTSVVEPYN+VL+TH+ LEH D   ++DNEAIYD+CRR+LDI RP +++LN L++QV+SS+TASLRFDG+LNVD+ EFQTNLVPYPRIHF L SYAPV S  +A HE  SV+EIT S FEP +
Sbjct:  113 REILDDILDRVRRMSDQCDGLQGFLFTHSLGGGTGSGLGSLLLEQLSLDYGKKSKLEFAVYPAPQVSTSVVEPYNTVLTTHTTLEHADCTFMVDNEAIYDMCRRNLDIARPNFSSLNNLIAQVVSSVTASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVSYAPVFSKSRATHEANSVSEITQSCFEPGN 301          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBA3_YEAST (Tubulin alpha-3 chain OS=Saccharomyces cerevisiae GN=TUB3 PE=1 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 2.697e-61
Identity = 114/189 (60.32%), Postives = 145/189 (76.72%), Query Frame = 3
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSS 569
            +EIVD   +RIRK+AD C GLQGFL  +++                  +YGKKSKL F VYP+PQ+STSVVEPYN+VL+TH+ LEH D   ++DNEAIYDIC+R+L I RP+++NLN L++QVISS+TASLRFDG+LNVD+ EFQTNLVPYPRIHF L SYAP++S ++A HE  SV+EITN+ FEP +
Sbjct:  113 REIVDEVEERIRKMADQCDGLQGFLFTHSLGGGTGSGLGSLLLENLSYEYGKKSKLEFAVYPAPQLSTSVVEPYNTVLTTHTTLEHADCTFMVDNEAIYDICKRNLGISRPSFSNLNGLIAQVISSVTASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVSYAPILSKKRATHESNSVSEITNACFEPGN 301          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBA1_NEUCR (Tubulin alpha-A chain OS=Neurospora crassa GN=tba-1 PE=2 SV=3)

HSP 1 Score: 234.572 bits (597), Expect = 2.697e-61
Identity = 112/189 (59.26%), Postives = 144/189 (76.19%), Query Frame = 3
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSS 569
            KE+ +  LDRIRK+ DNC  LQGFLVF++                   DY KK KL F+VYP+P+V+T+VVEPYN+VL+THS LEH+DV  L+DNEA+YDICRR+LDI RP+Y +LNRL++QV+SS+T+SLRFDGALNVD+ EFQTNLVP+PR+H+ L SYAPVISA K+ HE    +E+T   FEP++
Sbjct:  113 KEMAENVLDRIRKITDNCHSLQGFLVFHSFGGGTGSGFGALVLERLAQDYAKKCKLEFSVYPAPRVATAVVEPYNAVLATHSTLEHSDVTFLVDNEAVYDICRRNLDIPRPSYEHLNRLIAQVVSSITSSLRFDGALNVDLNEFQTNLVPFPRVHYPLISYAPVISATKSAHESFKTSELTLQCFEPNN 301          
The following BLAST results are available for this feature:
BLAST of CF504033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 419
Match NameE-valueIdentityDescription
TBA1_EMENI1.805e-6562.96Tubulin alpha-1 chain OS=Emericella nidulans GN=tu... [more]
TBA8_CAEEL1.170e-6461.90Tubulin alpha-8 chain OS=Caenorhabditis elegans GN... [more]
TBA2_SCHPO1.995e-6463.10Tubulin alpha-2 chain OS=Schizosaccharomyces pombe... [more]
TBA1_YEAST2.881e-6361.90Tubulin alpha-1 chain OS=Saccharomyces cerevisiae ... [more]
TBA_SORMA8.383e-6361.38Tubulin alpha chain OS=Sordaria macrospora GN=TUBA... [more]
TBA_ASHGO1.095e-6259.79Tubulin alpha chain OS=Ashbya gossypii GN=TUB1 PE=... [more]
TBA3_CHICK5.434e-6265.71Tubulin alpha-3 chain (Fragment) OS=Gallus gallus ... [more]
TBA_CANAL9.268e-6260.32Tubulin alpha chain OS=Candida albicans GN=TUB1 PE... [more]
TBA3_YEAST2.697e-6160.32Tubulin alpha-3 chain OS=Saccharomyces cerevisiae ... [more]
TBA1_NEUCR2.697e-6159.26Tubulin alpha-A chain OS=Neurospora crassa GN=tba-... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-521 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504033 ID=CF504033; Name=CF504033; organism=Citrus sinensis; type=EST; length=574bp
GGAAGGAGATTGTTGATCTATGCTTGGACCGGATCAGAAAACTTGCTGAT
AATTGCACTGGGCTACAAGGGTTCCTGGTTTTCAATGCTGTTGGAGGTGG
TACTGGCTCTGGACTTGGGTCACTTCTCTTGGAGCGTCTCTCTGTTGACT
ATGGAAAGAAATCAAAGCTTGGTTTCACTGTGTATCCTTCACCTCAGGTT
TCCACATCAGTTGTGGAACCTTACAACAGTGTTCTTTCAACACATTCCCT
CCTTGAGCACACCGATGTTGCTGTGCTTCTTGATAATGAAGCCATCTATG
ATATCTGCAGGCGCTCTCTTGACATTGAGCGCCCCACTTACACCAATCTC
AACCGACTTGTCTCTCAGGTGATCTCATCCCTCACTGCCTCTTTGAGGTT
TGATGGAGCTCTGAATGTGGATGTGACTGAGTTCCAGACCAATTTGGTTC
CCTATCCAAGGATCCATTTCATGCTCTCCTCTTATGCCCCAGTTATCTCT
GCAGAGAAGGCATTCCATGAGCAACTTTCAGTTGCTGAGATCACCAACAG
TGCTTTTGAGCCATCATCCATGAT
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