CF504033

Overview
NameCF504033
Unique NameCF504033
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB7_ORYSJ (Tubulin beta-7 chain OS=Oryza sativa subsp. japonica GN=TUBB7 PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 9.333e-38
Identity = 76/189 (40.21%), Postives = 116/189 (61.38%), Query Frame = 3 
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E++D  LD +RK A+NC  LQGF V +++                  +Y  +  L F+V+PSP+VS +VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R+L +  PT+ +LN L+S  +S +T  LRF G LN D+ +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   ++  +M
Sbjct:  111 ELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNM 299
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB7_MAIZE (Tubulin beta-7 chain OS=Zea mays GN=TUBB7 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 9.333e-38
Identity = 76/189 (40.21%), Postives = 116/189 (61.38%), Query Frame = 3 
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E++D  LD +RK A+NC  LQGF V +++                  +Y  +  L F+V+PSP+VS +VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R+L +  PT+ +LN L+S  +S +T  LRF G LN D+ +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   ++  +M
Sbjct:  111 ELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNM 299
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB7_GOSHI (Tubulin beta-7 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 9.333e-38
Identity = 74/189 (39.15%), Postives = 117/189 (61.90%), Query Frame = 3 
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E++D  LD +RK A+NC  LQGF + +++                  +Y  +  L F+V+PSP+VS +VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R+L +  P++ +LNRL+S  +S  T  LRF G LN D+ +   NL+P+PR+HF +  +AP+ S+    +  L++ E+T   ++  +M
Sbjct:  111 ELIDSVLDVVRKEAENCACLQGFQICHSLGGGTGSGMGTLLISKIKEEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENGDECMVLDNEALYDICFRTLKLTNPSFGDLNRLISTTMSGATCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSSSSQQYRALTIPELTQQMWDARNM 299
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB5_WHEAT (Tubulin beta-5 chain OS=Triticum aestivum GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 9.333e-38
Identity = 75/189 (39.68%), Postives = 116/189 (61.38%), Query Frame = 3 
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E++D  LD +RK A+NC  LQGF V +++                  +Y  +  L F+V+PSP+VS +VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R+L +  P++ +LN L+S  +S +T  LRF G LN D+ +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   ++  +M
Sbjct:  111 ELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQMYRSLTVPELTQQMWDSKNM 299
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB5_ORYSJ (Tubulin beta-5 chain OS=Oryza sativa subsp. japonica GN=TUBB5 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 9.333e-38
Identity = 76/189 (40.21%), Postives = 116/189 (61.38%), Query Frame = 3 
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E++D  LD +RK A+NC  LQGF V +++                  +Y  +  L F+V+PSP+VS +VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R+L +  PT+ +LN L+S  +S +T  LRF G LN D+ +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   ++  +M
Sbjct:  111 ELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNM 299
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB5_GOSHI (Tubulin beta-5 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 9.333e-38
Identity = 76/189 (40.21%), Postives = 116/189 (61.38%), Query Frame = 3 
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E++D  LD +RK A+NC  LQGF V +++                  +Y  +  L F+V+PSP+VS +VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R+L +  PT+ +LN L+S  +S +T  LRF G LN D+ +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   ++  +M
Sbjct:  111 ELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNM 299
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB3_WHEAT (Tubulin beta-3 chain OS=Triticum aestivum GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 9.333e-38
Identity = 76/189 (40.21%), Postives = 116/189 (61.38%), Query Frame = 3 
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E++D  LD +RK A+NC  LQGF V +++                  +Y  +  L F+V+PSP+VS +VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R+L +  PT+ +LN L+S  +S +T  LRF G LN D+ +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   ++  +M
Sbjct:  111 ELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNM 299
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB3_SOYBN (Tubulin beta chain (Fragment) OS=Glycine max GN=TUBB PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 9.333e-38
Identity = 76/189 (40.21%), Postives = 116/189 (61.38%), Query Frame = 3 
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E++D  LD +RK A+NC  LQGF V +++                  +Y  +  L F+V+PSP+VS +VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R+L +  PT+ +LN L+S  +S +T  LRF G LN D+ +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   ++  +M
Sbjct:  111 ELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNM 299
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB3_ORYSJ (Tubulin beta-3 chain OS=Oryza sativa subsp. japonica GN=TUBB3 PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 9.333e-38
Identity = 76/189 (40.21%), Postives = 116/189 (61.38%), Query Frame = 3 
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E++D  LD +RK A+NC  LQGF V +++                  +Y  +  L F+V+PSP+VS +VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R+L +  PT+ +LN L+S  +S +T  LRF G LN D+ +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   ++  +M
Sbjct:  111 ELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNM 299
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB2_SOYBN (Tubulin beta-2 chain OS=Glycine max GN=TUBB2 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 9.333e-38
Identity = 76/189 (40.21%), Postives = 117/189 (61.90%), Query Frame = 3 
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E++D  LD +RK A+NC  LQGF V +++                  +Y  +  L F+V+PSP+VS +VVEPYN+ LS H L+E+ D +++LDNEA+YDIC R+L +  P++ +LN L+S  +S +T  LRF G LN D+ +   NL+P+PR+HF +  +AP+ S     +  LSV E+T   ++  +M
Sbjct:  111 ELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADESMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLASRGSQQYRALSVPELTQQMWDSKNM 299
The following BLAST results are available for this feature:
BLAST of CF504033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 419
Match NameE-valueIdentityDescription
TBB7_ORYSJ9.333e-3840.21Tubulin beta-7 chain OS=Oryza sativa subsp. japoni... [more]
TBB7_MAIZE9.333e-3840.21Tubulin beta-7 chain OS=Zea mays GN=TUBB7 PE=2 SV=... [more]
TBB7_GOSHI9.333e-3839.15Tubulin beta-7 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB5_WHEAT9.333e-3839.68Tubulin beta-5 chain OS=Triticum aestivum GN=TUBB5... [more]
TBB5_ORYSJ9.333e-3840.21Tubulin beta-5 chain OS=Oryza sativa subsp. japoni... [more]
TBB5_GOSHI9.333e-3840.21Tubulin beta-5 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB3_WHEAT9.333e-3840.21Tubulin beta-3 chain OS=Triticum aestivum GN=TUBB3... [more]
TBB3_SOYBN9.333e-3840.21Tubulin beta chain (Fragment) OS=Glycine max GN=TU... [more]
TBB3_ORYSJ9.333e-3840.21Tubulin beta-3 chain OS=Oryza sativa subsp. japoni... [more]
TBB2_SOYBN9.333e-3840.21Tubulin beta-2 chain OS=Glycine max GN=TUBB2 PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-521 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504033 ID=CF504033; Name=CF504033; organism=Citrus sinensis; type=EST; length=574bp
GGAAGGAGATTGTTGATCTATGCTTGGACCGGATCAGAAAACTTGCTGAT
AATTGCACTGGGCTACAAGGGTTCCTGGTTTTCAATGCTGTTGGAGGTGG
TACTGGCTCTGGACTTGGGTCACTTCTCTTGGAGCGTCTCTCTGTTGACT
ATGGAAAGAAATCAAAGCTTGGTTTCACTGTGTATCCTTCACCTCAGGTT
TCCACATCAGTTGTGGAACCTTACAACAGTGTTCTTTCAACACATTCCCT
CCTTGAGCACACCGATGTTGCTGTGCTTCTTGATAATGAAGCCATCTATG
ATATCTGCAGGCGCTCTCTTGACATTGAGCGCCCCACTTACACCAATCTC
AACCGACTTGTCTCTCAGGTGATCTCATCCCTCACTGCCTCTTTGAGGTT
TGATGGAGCTCTGAATGTGGATGTGACTGAGTTCCAGACCAATTTGGTTC
CCTATCCAAGGATCCATTTCATGCTCTCCTCTTATGCCCCAGTTATCTCT
GCAGAGAAGGCATTCCATGAGCAACTTTCAGTTGCTGAGATCACCAACAG
TGCTTTTGAGCCATCATCCATGAT
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