CF504033

Overview
NameCF504033
Unique NameCF504033
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB2_EMENI (Tubulin beta-2 chain OS=Emericella nidulans GN=tubC PE=3 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 2.079e-37
Identity = 76/189 (40.21%), Postives = 115/189 (60.85%), Query Frame = 3
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E+VD  +D +R+ A++C  LQGF V +++                  ++  +    F+V PSP+VS +VVEPYN+ LS H L+EH+D    LDN+A+YDIC R+L +  P+Y +LN LVS V+S +T SLRF G LN D+ +   N+VP+PR+HF +  +AP+ S   +    +SV E+T   F+  +M
Sbjct:  111 ELVDQVIDVVRREAESCDCLQGFQVTHSLGGGTGSGMGTLLISKIREEFPDRMMATFSVMPSPKVSDTVVEPYNATLSVHQLVEHSDETFCLDNDALYDICIRTLKLSSPSYGDLNHLVSAVMSGITVSLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRSSSSFRTISVPELTQQMFDSRNM 299          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB2_ARATH (Tubulin beta-2/beta-3 chain OS=Arabidopsis thaliana GN=TUBB2 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.079e-37
Identity = 75/189 (39.68%), Postives = 116/189 (61.38%), Query Frame = 3
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E++D  LD +RK A+NC  LQGF V +++                  +Y  +  L F+V+PSP+VS +VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R+L +  P++ +LN L+S  +S +T  LRF G LN D+ +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   ++  +M
Sbjct:  111 ELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDSKNM 299          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB_TOXGO (Tubulin beta chain OS=Toxoplasma gondii PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.715e-37
Identity = 78/189 (41.27%), Postives = 113/189 (59.79%), Query Frame = 3
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E++D  LD +RK A+ C  LQGF + +++                  +Y  +    F+V+PSP+VS +VVEPYN+ LS H L+E+ D   ++DNEA+YDIC R+L +  PTY +LN LVS  +S +T  LRF G LN D+ +   NLVP+PR+HF L  +AP+ S     +  LSV E+T   F+  +M
Sbjct:  111 ELIDSVLDVVRKEAEGCDCLQGFQITHSLGGGTGSGMGTLLISKVREEYPDRIMETFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVQVIDNEALYDICFRTLKLTTPTYGDLNHLVSAAMSGVTCCLRFPGQLNSDLRKLAVNLVPFPRLHFFLIGFAPLTSRGSQQYRALSVPELTQQMFDAKNM 299          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB_PLAFK (Tubulin beta chain OS=Plasmodium falciparum (isolate K1 / Thailand) PE=3 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 2.715e-37
Identity = 76/189 (40.21%), Postives = 114/189 (60.32%), Query Frame = 3
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E++D  LD +RK A+ C  LQGF + +++                  +Y  +    F+V+PSP+VS +VVEPYN+ LS H L+E+ D   ++DNEA+YDIC R+L +  PTY +LN LVS  +S +T SLRF G LN D+ +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   F+  +M
Sbjct:  111 ELIDAVLDVVRKEAEGCDCLQGFQITHSLGGGTGSGMGTLLISKIREEYPDRIMETFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVQVIDNEALYDICFRTLKLTTPTYGDLNHLVSAAMSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQMFDAKNM 299          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB_PLAF7 (Tubulin beta chain OS=Plasmodium falciparum (isolate 3D7) GN=PF10_0084 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.715e-37
Identity = 76/189 (40.21%), Postives = 114/189 (60.32%), Query Frame = 3
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E++D  LD +RK A+ C  LQGF + +++                  +Y  +    F+V+PSP+VS +VVEPYN+ LS H L+E+ D   ++DNEA+YDIC R+L +  PTY +LN LVS  +S +T SLRF G LN D+ +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   F+  +M
Sbjct:  111 ELIDAVLDVVRKEAEGCDCLQGFQITHSLGGGTGSGMGTLLISKIREEYPDRIMETFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVQVIDNEALYDICFRTLKLTTPTYGDLNHLVSAAMSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQMFDAKNM 299          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB_NEUCR (Tubulin beta chain OS=Neurospora crassa GN=tub-2 PE=1 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 2.715e-37
Identity = 76/189 (40.21%), Postives = 114/189 (60.32%), Query Frame = 3
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E+VD  LD +R+ A+ C  LQGF + +++                  ++  +    F+V PSP+VS +VVEPYN+ LS H L+E++D    +DNEA+YDIC R+L +  P+Y +LN LVS V+S +T SLRF G LN D+ +   N+VP+PR+HF +  +AP+ S        +SV E+T   F+P +M
Sbjct:  111 ELVDQVLDVVRREAEGCDCLQGFQITHSLGGGTGAGMGTLLISKIREEFPDRMMATFSVVPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICMRTLKLSNPSYGDLNHLVSAVMSGVTVSLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRGAHHFRAVSVPELTQQMFDPKNM 299          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB_HORVU (Tubulin beta chain OS=Hordeum vulgare GN=TUBB PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.715e-37
Identity = 75/189 (39.68%), Postives = 116/189 (61.38%), Query Frame = 3
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E++D  LD +RK A+NC  LQGF V +++                  +Y  +  L F+V+PSP+VS +VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R+L +  P++ +LN L+S  +S +T  LRF G LN D+ +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   ++  +M
Sbjct:  111 ELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNM 299          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB_EUPCR (Tubulin beta chain OS=Euplotes crassus PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.715e-37
Identity = 76/189 (40.21%), Postives = 115/189 (60.85%), Query Frame = 3
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E++D  LD +RK A+ C  LQGF + +++                  +Y  +    F+V+PSP+VS +VVEPYN+ LS H L+E+ D  +++DNEA+YDIC R+L +  PTY +LN LVS  IS +T+ LRF G LN D+ +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   F+  +M
Sbjct:  111 ELIDSVLDVVRKEAEGCDCLQGFQITHSLGGGTGSGMGTLLISKIREEYPDRIMETFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVMVIDNEALYDICFRTLKLTTPTYGDLNHLVSACISGVTSCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMFDAKNM 299          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB_CICAR (Tubulin beta chain OS=Cicer arietinum GN=TUBB PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.715e-37
Identity = 75/189 (39.68%), Postives = 116/189 (61.38%), Query Frame = 3
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E++D  LD +RK A+NC  LQGF V +++                  +Y  +  L F+V+PSP+VS +VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R+L +  P++ +LN L+S  +S +T  LRF G LN D+ +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   ++  +M
Sbjct:  113 ELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYVSLTVPELTQQMWDAKNM 301          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB8_MAIZE (Tubulin beta-8 chain OS=Zea mays GN=TUBB8 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.715e-37
Identity = 75/189 (39.68%), Postives = 116/189 (61.38%), Query Frame = 3
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E++D  LD +RK A+NC  LQGF V +++                  +Y  +  L F+V+PSP+VS +VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R+L +  P++ +LN L+S  +S +T  LRF G LN D+ +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   ++  +M
Sbjct:  111 ELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNM 299          
The following BLAST results are available for this feature:
BLAST of CF504033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 419
Match NameE-valueIdentityDescription
TBB2_EMENI2.079e-3740.21Tubulin beta-2 chain OS=Emericella nidulans GN=tub... [more]
TBB2_ARATH2.079e-3739.68Tubulin beta-2/beta-3 chain OS=Arabidopsis thalian... [more]
TBB_TOXGO2.715e-3741.27Tubulin beta chain OS=Toxoplasma gondii PE=3 SV=1[more]
TBB_PLAFK2.715e-3740.21Tubulin beta chain OS=Plasmodium falciparum (isola... [more]
TBB_PLAF72.715e-3740.21Tubulin beta chain OS=Plasmodium falciparum (isola... [more]
TBB_NEUCR2.715e-3740.21Tubulin beta chain OS=Neurospora crassa GN=tub-2 P... [more]
TBB_HORVU2.715e-3739.68Tubulin beta chain OS=Hordeum vulgare GN=TUBB PE=2... [more]
TBB_EUPCR2.715e-3740.21Tubulin beta chain OS=Euplotes crassus PE=3 SV=1[more]
TBB_CICAR2.715e-3739.68Tubulin beta chain OS=Cicer arietinum GN=TUBB PE=2... [more]
TBB8_MAIZE2.715e-3739.68Tubulin beta-8 chain OS=Zea mays GN=TUBB8 PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-521 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504033 ID=CF504033; Name=CF504033; organism=Citrus sinensis; type=EST; length=574bp
GGAAGGAGATTGTTGATCTATGCTTGGACCGGATCAGAAAACTTGCTGAT
AATTGCACTGGGCTACAAGGGTTCCTGGTTTTCAATGCTGTTGGAGGTGG
TACTGGCTCTGGACTTGGGTCACTTCTCTTGGAGCGTCTCTCTGTTGACT
ATGGAAAGAAATCAAAGCTTGGTTTCACTGTGTATCCTTCACCTCAGGTT
TCCACATCAGTTGTGGAACCTTACAACAGTGTTCTTTCAACACATTCCCT
CCTTGAGCACACCGATGTTGCTGTGCTTCTTGATAATGAAGCCATCTATG
ATATCTGCAGGCGCTCTCTTGACATTGAGCGCCCCACTTACACCAATCTC
AACCGACTTGTCTCTCAGGTGATCTCATCCCTCACTGCCTCTTTGAGGTT
TGATGGAGCTCTGAATGTGGATGTGACTGAGTTCCAGACCAATTTGGTTC
CCTATCCAAGGATCCATTTCATGCTCTCCTCTTATGCCCCAGTTATCTCT
GCAGAGAAGGCATTCCATGAGCAACTTTCAGTTGCTGAGATCACCAACAG
TGCTTTTGAGCCATCATCCATGAT
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