CF504033

Overview
NameCF504033
Unique NameCF504033
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB4_ARATH (Tubulin beta-4 chain OS=Arabidopsis thaliana GN=TUBB4 PE=2 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 7.901e-37
Identity = 75/189 (39.68%), Postives = 115/189 (60.85%), Query Frame = 3 
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E++D  LD +RK A+N   LQGF V +++                  +Y  +  + F+V+PSP+VS +VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R+L +  PT+ +LN L+S  +S +T  LRF G LN D+ +   NL+P+PR+HF +  +AP+ S     +  LSV E+T   ++  +M
Sbjct:  111 ELIDSVLDVVRKEAENSDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLANPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYSALSVPELTQQMWDAKNM 299
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB2C_MOUSE (Tubulin beta-2C chain OS=Mus musculus GN=Tubb2c PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 7.901e-37
Identity = 77/189 (40.74%), Postives = 113/189 (59.79%), Query Frame = 3 
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E+VD  LD +RK A++C  LQGF + +++                  +Y  +    F+V PSP+VS +VVEPYN+ LS H L+E+TD    +DNEA+YDIC R+L +  PTY +LN LVS  +S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S     +  L+V E+T   F+  +M
Sbjct:  111 ELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNM 299
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB2C_HUMAN (Tubulin beta-2C chain OS=Homo sapiens GN=TUBB2C PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 7.901e-37
Identity = 77/189 (40.74%), Postives = 113/189 (59.79%), Query Frame = 3 
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E+VD  LD +RK A++C  LQGF + +++                  +Y  +    F+V PSP+VS +VVEPYN+ LS H L+E+TD    +DNEA+YDIC R+L +  PTY +LN LVS  +S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S     +  L+V E+T   F+  +M
Sbjct:  111 ELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNM 299
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB2C_BOVIN (Tubulin beta-2C chain OS=Bos taurus GN=TUBB2C PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 7.901e-37
Identity = 77/189 (40.74%), Postives = 113/189 (59.79%), Query Frame = 3 
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E+VD  LD +RK A++C  LQGF + +++                  +Y  +    F+V PSP+VS +VVEPYN+ LS H L+E+TD    +DNEA+YDIC R+L +  PTY +LN LVS  +S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S     +  L+V E+T   F+  +M
Sbjct:  111 ELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNM 299
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB1_CHOCR (Tubulin beta-1 chain OS=Chondrus crispus GN=TUBB PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 7.901e-37
Identity = 76/189 (40.21%), Postives = 113/189 (59.79%), Query Frame = 3 
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E+V+  LD IR+ A+ C  LQGF V +++                  +Y  +    ++V PSP+VS +VVEPYN  LS H L+E+ D    +DNEA+Y+IC  +L IE+P+Y  LN L+S V+S +T SLRF G LN D+ +   NLVP+PR+HF    +AP+ ++  A +  LSV E+    F+ ++M
Sbjct:  113 ELVETALDIIRREAETCDVLQGFQVTHSLGGGTGSGMGTLLVSKIREEYPDRMMCTYSVLPSPKVSDTVVEPYNCTLSIHQLIENADCVFAIDNEALYNICYNTLKIEQPSYDELNSLISSVMSGITCSLRFPGQLNADLRKLAVNLVPFPRLHFFAVGHAPLAASNSAGYRSLSVPELAGQMFDRNNM 301
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB_EUPFO (Tubulin beta chain OS=Euplotes focardii PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.032e-36
Identity = 77/189 (40.74%), Postives = 113/189 (59.79%), Query Frame = 3 
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E++D  LD +RK A+ C  LQGF + +++                   Y  +    F+V+PSP+VS +VVEPYN+ LS H L+E+ D  + +DNEA+YDIC R+L    PTY +LN LVS VIS +T+ LRF G LN D+ +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   F+  +M
Sbjct:  111 ELIDSVLDVVRKEAEGCDCLQGFQITHSLGGGTGSGMGTLLISKIREKYPDRIMETFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVMCIDNEALYDICFRTLKPTTPTYGDLNHLVSAVISGVTSCLRFPGQLNSDLRKLAVNLIPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQMFDAKNM 299
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB_ASPFL (Tubulin beta chain OS=Aspergillus flavus PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.032e-36
Identity = 74/189 (39.15%), Postives = 113/189 (59.79%), Query Frame = 3 
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E+VD  +D +R+ A+ C  LQGF + +++                  ++  +    ++V PSP+VS +VVEPYN+ LS H L+EH+D    +DNEA+YDIC R+L +  P+Y +LN LVS V+S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S        +SV E+T   F+P +M
Sbjct:  111 ELVDQVVDVVRREAEGCDCLQGFQITHSLGGGTGAGMGTLLISKIREEFPDRMMATYSVVPSPKVSDTVVEPYNATLSVHQLVEHSDETFCIDNEALYDICMRTLKLSNPSYGDLNHLVSAVMSGVTTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRGAHSFRAVSVPELTQQMFDPKNM 299
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB3_OOMCK (Tubulin beta-3 chain OS=Oomycete-like sp. (strain MacKay2000) GN=TUBB3 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.032e-36
Identity = 75/189 (39.68%), Postives = 116/189 (61.38%), Query Frame = 3 
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E++D  LD +R  A++C  LQGF + +++                  +Y  +  + F+V PSP+VS +VVEPYN+ LS H ++E+TD + +LDNEA+YDIC R+L +  PTY +LN LV   +S +T+SLRF G LN D+ +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   F+  +M
Sbjct:  111 ELIDSVLDVVRNEAESCDCLQGFQMTHSLGGGTGSGMGTLLIAKLREEYPDRVMMTFSVCPSPKVSDTVVEPYNATLSVHQIVENTDESFVLDNEALYDICFRTLKLTTPTYGDLNHLVCVCMSGVTSSLRFPGQLNCDLRKVAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQCFDAKNM 299
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB2_SOLTU (Tubulin beta-2 chain OS=Solanum tuberosum GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.032e-36
Identity = 75/189 (39.68%), Postives = 115/189 (60.85%), Query Frame = 3 
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E++D  LD +RK A+NC  LQGF V +++                  +Y  +  L F+V+PSP+VS +VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R+L +  P++ +LN L+S  +S +T  LRF G LN D+ +   NL+P PR+HF +  +AP+ S     +  L+V E+T   ++  +M
Sbjct:  114 ELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKVREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPLPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNM 302
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB1_SOLTU (Tubulin beta-1 chain OS=Solanum tuberosum GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.032e-36
Identity = 75/189 (39.68%), Postives = 115/189 (60.85%), Query Frame = 3 
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E++D  LD +RK A+NC  LQGF V +++                  +Y  +  L F+V+PSP+VS +VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R+L +  P++ +LN L+S  +S +T  LRF G LN D+ +   NL+P PR+HF +  +AP+ S     +  L+V E+T   ++  +M
Sbjct:  114 ELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKVREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPLPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNM 302
The following BLAST results are available for this feature:
BLAST of CF504033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 419
Match NameE-valueIdentityDescription
TBB4_ARATH7.901e-3739.68Tubulin beta-4 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB2C_MOUSE7.901e-3740.74Tubulin beta-2C chain OS=Mus musculus GN=Tubb2c PE... [more]
TBB2C_HUMAN7.901e-3740.74Tubulin beta-2C chain OS=Homo sapiens GN=TUBB2C PE... [more]
TBB2C_BOVIN7.901e-3740.74Tubulin beta-2C chain OS=Bos taurus GN=TUBB2C PE=2... [more]
TBB1_CHOCR7.901e-3740.21Tubulin beta-1 chain OS=Chondrus crispus GN=TUBB P... [more]
TBB_EUPFO1.032e-3640.74Tubulin beta chain OS=Euplotes focardii PE=3 SV=1[more]
TBB_ASPFL1.032e-3639.15Tubulin beta chain OS=Aspergillus flavus PE=3 SV=1[more]
TBB3_OOMCK1.032e-3639.68Tubulin beta-3 chain OS=Oomycete-like sp. (strain ... [more]
TBB2_SOLTU1.032e-3639.68Tubulin beta-2 chain OS=Solanum tuberosum GN=TUBB2... [more]
TBB1_SOLTU1.032e-3639.68Tubulin beta-1 chain OS=Solanum tuberosum GN=TUBB1... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-521 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504033 ID=CF504033; Name=CF504033; organism=Citrus sinensis; type=EST; length=574bp
GGAAGGAGATTGTTGATCTATGCTTGGACCGGATCAGAAAACTTGCTGAT
AATTGCACTGGGCTACAAGGGTTCCTGGTTTTCAATGCTGTTGGAGGTGG
TACTGGCTCTGGACTTGGGTCACTTCTCTTGGAGCGTCTCTCTGTTGACT
ATGGAAAGAAATCAAAGCTTGGTTTCACTGTGTATCCTTCACCTCAGGTT
TCCACATCAGTTGTGGAACCTTACAACAGTGTTCTTTCAACACATTCCCT
CCTTGAGCACACCGATGTTGCTGTGCTTCTTGATAATGAAGCCATCTATG
ATATCTGCAGGCGCTCTCTTGACATTGAGCGCCCCACTTACACCAATCTC
AACCGACTTGTCTCTCAGGTGATCTCATCCCTCACTGCCTCTTTGAGGTT
TGATGGAGCTCTGAATGTGGATGTGACTGAGTTCCAGACCAATTTGGTTC
CCTATCCAAGGATCCATTTCATGCTCTCCTCTTATGCCCCAGTTATCTCT
GCAGAGAAGGCATTCCATGAGCAACTTTCAGTTGCTGAGATCACCAACAG
TGCTTTTGAGCCATCATCCATGAT
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