CF504033

Overview
NameCF504033
Unique NameCF504033
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB1_GEOCN (Tubulin beta-1 chain OS=Geotrichum candidum PE=3 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.032e-36
Identity = 74/189 (39.15%), Postives = 115/189 (60.85%), Query Frame = 3
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E+VD  LD +R+ A+N   LQGF + +++                  +Y  +    F+V PSP+VS ++VEPYN+ LS H L+E+ D    +DNEA+YDIC+ +L +++PT+ +LN+LVS V+S +T  LRF G LN D+ +   NLVP+PR+HF +  YAP+ +  +     L+V E+T   F+  +M
Sbjct:  111 ELVDSVLDIVRREAENSDSLQGFQISHSLGGGTGSGMGTLLISKIREEYPDRMMATFSVVPSPKVSDTIVEPYNATLSVHQLIENADETFCIDNEALYDICQHTLKLKQPTHADLNQLVSGVMSGITTCLRFPGQLNSDLRKLAVNLVPFPRLHFFMVGYAPLSAPGQQSFRSLTVPELTQQLFDSKNM 299          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB1_CYAPA (Tubulin beta-1 chain OS=Cyanophora paradoxa GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.032e-36
Identity = 74/189 (39.15%), Postives = 113/189 (59.79%), Query Frame = 3
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E++D  LD +RK A+ C  LQGF + +++                  +Y  +    ++V+PSP+VS +VVEPYN+ LS H L+E+ D  +++DNEA+YDIC R+L +  PTY +LN LVS  IS +T  LRF G LN D+ +   NL+P+PR+HF +  + P+ S     +  L+V E+T   F+  +M
Sbjct:  111 ELIDSVLDVVRKEAEGCDCLQGFQITHSMGGGTGSGMGTLLIAKVREEYPDRMMCTYSVFPSPKVSDTVVEPYNATLSVHQLVENADEVMVIDNEALYDICFRTLKLTTPTYGDLNHLVSACISGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMIGFVPLTSRGSQQYRALTVPELTQQMFDAKNM 299          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBA_OCTVU (Tubulin alpha chain (Fragment) OS=Octopus vulgaris PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.032e-36
Identity = 70/89 (78.65%), Postives = 86/89 (96.63%), Query Frame = 3
Query:  303 ICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSS 569
            IC+R+LDIERP+YTNLNRL+SQV+SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAP+ISAEKA+HEQL+VAE+T++ FEP++
Sbjct:    1 ICKRNLDIERPSYTNLNRLISQVVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLAVAEVTSACFEPAN 89          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBAA_PNECA (Tubulin alpha chain (Fragment) OS=Pneumocystis carinii GN=TUB-A PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.032e-36
Identity = 73/97 (75.26%), Postives = 86/97 (88.66%), Query Frame = 3
Query:  279 LDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSS 569
            +DNEAIYDICRR+L IERP YTNLNRL++ V+SS+TASLRFDG+LNVD+ EFQTNLVPYPRIHF L +YAPVISA KA HE  SV+EITN+ FEP++
Sbjct:    1 VDNEAIYDICRRNLGIERPGYTNLNRLIAHVVSSITASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVTYAPVISAAKAVHEANSVSEITNACFEPNN 97          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB_USTMA (Tubulin beta chain OS=Ustilago maydis GN=UM05828 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.348e-36
Identity = 75/189 (39.68%), Postives = 115/189 (60.85%), Query Frame = 3
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E+VD  LD IRK A+NC  LQGF + +++                  +Y  +    F+V PSP+VS +VVEPYN+ LS H L+E++D    +DNEA+Y+IC ++L +  PTY +LN LVS V+S +T  LRF G LN D+ +   N+VP+PR+HF +  ++P+ +     +  +++ EIT  AF+  +M
Sbjct:  111 ELVDSVLDVIRKEAENCDMLQGFQITHSLGGGTGAGMGTLLISKIREEYPDRMMATFSVLPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYNICFKTLKLNAPTYGDLNHLVSLVMSGVTTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFSPLTARGSQSYRAVTIPEITQQAFDSKNM 299          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB_TRITR (Tubulin beta chain OS=Trichuris trichiura PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.348e-36
Identity = 76/189 (40.21%), Postives = 113/189 (59.79%), Query Frame = 3
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E+VD  LD +RK +++C  LQGF + +++                  +Y  +    F+V PSP+VS +VVEPYN+ LS H L+E+TD    +DNEA+YDIC R+L +  PTY +LN LVS  +S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S     +  L+V E+T   F+  +M
Sbjct:  111 ELVDNVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMTTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQGYRALTVPELTQQMFDAKNM 299          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB6_MOUSE (Tubulin beta-6 chain OS=Mus musculus GN=Tubb6 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.348e-36
Identity = 76/189 (40.21%), Postives = 113/189 (59.79%), Query Frame = 3
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E+VD  LD +RK  ++C  LQGF + +++                  +Y  +    F+V PSP+VS +VVEPYN+ LS H L+E+TD    +DNEA+YDIC R+L +  PTY +LN LVS  +S +T SLRF G LN D+ +   N+VP+PR+HF +  +AP+ +     +  L+V E+T   F+  +M
Sbjct:  111 ELVDSVLDVVRKECEHCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTSLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNM 299          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB6_BOVIN (Tubulin beta-6 chain OS=Bos taurus GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.348e-36
Identity = 76/189 (40.21%), Postives = 113/189 (59.79%), Query Frame = 3
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E+VD  LD +RK  ++C  LQGF + +++                  +Y  +    F+V PSP+VS +VVEPYN+ LS H L+E+TD    +DNEA+YDIC R+L +  PTY +LN LVS  +S +T SLRF G LN D+ +   N+VP+PR+HF +  +AP+ +     +  L+V E+T   F+  +M
Sbjct:  111 ELVDSVLDVVRKECEHCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTSLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNM 299          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB5_CHICK (Tubulin beta-5 chain OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.348e-36
Identity = 76/189 (40.21%), Postives = 113/189 (59.79%), Query Frame = 3
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E+VD  LD +RK  ++C  LQGF + +++                  +Y  +    F+V PSP+VS +VVEPYN+ LS H L+E+TD    +DNEA+YDIC R+L +  PTY +LN LVS  +S +T SLRF G LN D+ +   N+VP+PR+HF +  +AP+ +     +  L+V E+T   F+  +M
Sbjct:  111 ELVDSVLDVVRKECEHCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTSLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNM 299          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB2_COLGR (Tubulin beta-2 chain OS=Colletotrichum graminicola GN=TUB2 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.348e-36
Identity = 75/189 (39.68%), Postives = 113/189 (59.79%), Query Frame = 3
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E+VD  LD +R+ A+ C  LQGF + +++                  ++  +    F+V PSP+VS +VVEPYN+ LS H L+E++D    +DNEA+YDIC R+L +  P+Y +LN LVS V+S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S        +SV E+T   F+P +M
Sbjct:  111 ELVDQVLDVVRREAEGCDCLQGFQITHSLGGGTGAGMGTLLISKIREEFPDRMMATFSVVPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICMRTLKLSNPSYGDLNHLVSAVMSGVTTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRGAHSFRAVSVPELTQQMFDPKNM 299          
The following BLAST results are available for this feature:
BLAST of CF504033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 419
Match NameE-valueIdentityDescription
TBB1_GEOCN1.032e-3639.15Tubulin beta-1 chain OS=Geotrichum candidum PE=3 S... [more]
TBB1_CYAPA1.032e-3639.15Tubulin beta-1 chain OS=Cyanophora paradoxa GN=TUB... [more]
TBA_OCTVU1.032e-3678.65Tubulin alpha chain (Fragment) OS=Octopus vulgaris... [more]
TBAA_PNECA1.032e-3675.26Tubulin alpha chain (Fragment) OS=Pneumocystis car... [more]
TBB_USTMA1.348e-3639.68Tubulin beta chain OS=Ustilago maydis GN=UM05828 P... [more]
TBB_TRITR1.348e-3640.21Tubulin beta chain OS=Trichuris trichiura PE=3 SV=... [more]
TBB6_MOUSE1.348e-3640.21Tubulin beta-6 chain OS=Mus musculus GN=Tubb6 PE=1... [more]
TBB6_BOVIN1.348e-3640.21Tubulin beta-6 chain OS=Bos taurus GN=TUBB6 PE=2 S... [more]
TBB5_CHICK1.348e-3640.21Tubulin beta-5 chain OS=Gallus gallus PE=3 SV=1[more]
TBB2_COLGR1.348e-3639.68Tubulin beta-2 chain OS=Colletotrichum graminicola... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-521 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504033 ID=CF504033; Name=CF504033; organism=Citrus sinensis; type=EST; length=574bp
GGAAGGAGATTGTTGATCTATGCTTGGACCGGATCAGAAAACTTGCTGAT
AATTGCACTGGGCTACAAGGGTTCCTGGTTTTCAATGCTGTTGGAGGTGG
TACTGGCTCTGGACTTGGGTCACTTCTCTTGGAGCGTCTCTCTGTTGACT
ATGGAAAGAAATCAAAGCTTGGTTTCACTGTGTATCCTTCACCTCAGGTT
TCCACATCAGTTGTGGAACCTTACAACAGTGTTCTTTCAACACATTCCCT
CCTTGAGCACACCGATGTTGCTGTGCTTCTTGATAATGAAGCCATCTATG
ATATCTGCAGGCGCTCTCTTGACATTGAGCGCCCCACTTACACCAATCTC
AACCGACTTGTCTCTCAGGTGATCTCATCCCTCACTGCCTCTTTGAGGTT
TGATGGAGCTCTGAATGTGGATGTGACTGAGTTCCAGACCAATTTGGTTC
CCTATCCAAGGATCCATTTCATGCTCTCCTCTTATGCCCCAGTTATCTCT
GCAGAGAAGGCATTCCATGAGCAACTTTCAGTTGCTGAGATCACCAACAG
TGCTTTTGAGCCATCATCCATGAT
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