CF504033

Overview
NameCF504033
Unique NameCF504033
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB_ACHKL (Tubulin beta chain OS=Achlya klebsiana PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.152e-34
Identity = 74/189 (39.15%), Postives = 111/189 (58.73%), Query Frame = 3
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E++D  LD +RK A++C  LQGF + +++                  +Y  +    ++V PSP+VS +VVEPYN+ LS H L+E+ D  + LDNEA+YDIC R+L +  PTY +LN LV   +S +T  LRF G LN  V +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   F+  +M
Sbjct:  110 ELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKIREEYPDRIMCTYSVCPSPKVSDTVVEPYNATLSVHQLVENADEVMCLDNEALYDICFRTLKLTNPTYGDLNHLVCAAMSGITTLLRFPGQLN-SVLKLAVNLIPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQQFDAKNM 297          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB_USTVI (Tubulin beta chain OS=Ustilago violacea PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.810e-34
Identity = 74/189 (39.15%), Postives = 114/189 (60.32%), Query Frame = 3
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E+VD  LD +RK A+    LQGF + +++                  ++  +    F+V PSP+VS +VVEPYN+VLS H L+E++D    +DNEA+YDIC R+L +  PT+ +LN LVS V+S +T  LRF G LN D+ +   N+VP+PR+HF    +AP+ +   + +  ++VAE+T   F+  +M
Sbjct:  111 ELVDQVLDVVRKEAEGTDCLQGFQLTHSLGGGTGSGMGTLLVSKIREEFPDRMMATFSVVPSPKVSDTVVEPYNAVLSVHQLVENSDETFCIDNEALYDICFRTLKLSAPTHGDLNGLVSIVMSGITTCLRFPGQLNSDLRKLAVNMVPFPRLHFFTVGFAPLTARGSSQYRAVTVAELTAQMFDAKNM 299          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB2_SUIBO (Tubulin beta-2 chain OS=Suillus bovinus GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.793e-34
Identity = 69/189 (36.51%), Postives = 118/189 (62.43%), Query Frame = 3
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E++D  LD +R+  +    LQGF + +++                  +Y  +    F++ P+P VS +VVEPYNS+LS H L+++ D+ + +DNEA+YDI  R+L I+ P Y +LN+L+++V+  ++ SLRF G LN D+ +   NLVP+PR+HF++ S+AP    +    ++LSV+E+T+S F+  ++
Sbjct:  115 ELIDGILDIVRRQCEATEALQGFQMIHSLGGGTGAGLGSLLLSKLREEYPDRMLSTFSILPAPNVSETVVEPYNSLLSIHQLVDNCDLTICIDNEALYDIAVRTLKIKSPGYKDLNQLIAKVMCGVSTSLRFPGQLNGDLRKLGMNLVPFPRLHFLMPSFAPFYDPKARTFQRLSVSELTSSLFDKKNL 303          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB2_GEOCN (Tubulin beta-2 chain OS=Geotrichum candidum PE=3 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 6.260e-34
Identity = 69/189 (36.51%), Postives = 112/189 (59.26%), Query Frame = 3
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E++D  +D IR+ A+    LQGF + +++                  +Y  +    ++V PSP+VS +V EPYN+VLS H L+++ D    LDNEA+YDIC ++L I RP++ +LN L++ V+S +T  LR+ G LN D+ +   NLVP+PR+HF  + +AP+ +        L+V E+T   F P+++
Sbjct:  113 ELMDSVMDIIRREAEQSESLQGFQLAHSLGGGTGSGLGTLLLTKIREEYPDRMLSTYSVLPSPKVSDTVTEPYNAVLSFHQLIDNADATYCLDNEALYDICEKTLKINRPSHQDLNSLIALVMSGVTTGLRYPGQLNGDLRKLAVNLVPFPRLHFFTTGFAPLFAKNSRAFHNLTVPELTQQLFNPANV 301          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB_PLESA (Tubulin beta chain OS=Pleurotus sajor-caju PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 8.176e-34
Identity = 71/189 (37.57%), Postives = 110/189 (58.20%), Query Frame = 3
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E+VD  LD +RK A+    LQGF + +++                  +Y  +    ++V PSP+VS +VVEPYN+ LS H L+E++D    +DNEA+YDIC R+L +  PTY +LN L+S V+S +T  LRF G LN D+ +   N+VP+PR+HF +    P+ +     +  ++V E+T   F+  +M
Sbjct:  111 ELVDAVLDVVRKEAEGTDCLQGFQITHSLGGGTGAGMGTLLISKIREEYPDRMMCTYSVVPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTTPTYGDLNHLISIVMSGITTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMPGVCPLTARGSQQYRAVTVPELTQQMFDAKNM 299          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB_ENCHE (Tubulin beta chain OS=Encephalitozoon hellem GN=TUB2 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.395e-33
Identity = 72/189 (38.10%), Postives = 111/189 (58.73%), Query Frame = 3
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E++D  +D +RK A++   LQGF + +++                  D+  +    F+V PSP+VS +VVEPYN+ LS H L+E+ D    +DNEA+YDIC R+L +  P Y +LN LVS V+S +T  LRF G LN D+ +   N++P+PR+HF +   AP+I+      +  SV+E+T   F+  +M
Sbjct:  111 ELIDSVMDVVRKEAESSDCLQGFQITHSLGGGTGAGMGTLLLSKIREDFPDRMICTFSVVPSPKVSDTVVEPYNATLSIHQLVENADETFCIDNEALYDICFRTLKMSNPGYGDLNHLVSLVMSGVTTCLRFPGQLNADLRKLAVNMIPFPRLHFFVVGSAPLIAIGTQKFKTYSVSELTQQMFDSKNM 299          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB_EUGGR (Tubulin beta chain OS=Euglena gracilis GN=TUBB PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.058e-33
Identity = 72/189 (38.10%), Postives = 111/189 (58.73%), Query Frame = 3
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E++D  LD +RK A++C  LQGF + +++                  +Y  +  + F+V PSP+VS +VVEPYN+ LS H L+E+ D  + + NEA+YDIC  +L +  PT+ +   LVS V+S +T  LRF G LN D+ +   NL+P+PR+HF L  +AP+ S     +  L+V E+T   F+  +M
Sbjct:  109 ELIDSVLDVVRKEAESCDCLQGFQIAHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVIPSPKVSDTVVEPYNTTLSVHQLVENADEVMCIGNEALYDICLPTLKLTTPTFGH-ETLVSAVMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFLVGFAPLTSRGSQQYRALTVPELTQQMFDAKNM 296          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB_ENCIN (Tubulin beta chain OS=Encephalitozoon intestinalis GN=TUB2 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.014e-32
Identity = 69/189 (36.51%), Postives = 110/189 (58.20%), Query Frame = 3
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E++D  +D +RK A++   LQGF + +++                  D+  +    F+V PSP+VS +VVEPYN+ LS H L+E+ D    +DNEA+YD+C R+L +  P Y +LN LVS V+S +T  LRF G LN  + +   N++P+PR+HF +  +AP+ +      +  SV+E+T   F+  +M
Sbjct:  111 ELIDSVMDVVRKEAESSDCLQGFQITHSLGGGTGAGMGTLLLSKIREDFPDRMICTFSVVPSPKVSDTVVEPYNATLSIHQLVENADETFCIDNEALYDMCFRTLKLNNPGYGDLNHLVSLVMSGVTTCLRFPGQLNAYLRKLAVNMIPFPRLHFFVVGFAPLTAVGTQKFKTYSVSELTQQMFDSKNM 299          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB1_DAUCA (Tubulin beta-1 chain (Fragment) OS=Daucus carota GN=TUBB1 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 5.859e-32
Identity = 63/142 (44.37%), Postives = 96/142 (67.61%), Query Frame = 3
Query:  147 DYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            +Y  +  L F+V+PSP+VS +VVEPYN+ LS H L+E+ DV ++LDNEA+YDIC R+L +  P++ +LN L+S  +S +T SLRF G LN D+ +    L+P+PR+HF +  +AP+ S     +  LSV E+T   ++  +M
Sbjct:   26 EYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADVCMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCSLRFPGQLNSDLRKLAVILIPFPRLHFFMVGFAPLTSRGSQQYRSLSVPELTQQMWDSKNM 167          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB_BOMMO (Tubulin beta chain OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 7.653e-32
Identity = 68/189 (35.98%), Postives = 109/189 (57.67%), Query Frame = 3
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            ++++  LD +RK A+ C  LQGF + +++                  +Y  +    ++V PSP VS +VVEPYN+ LS + L+E++  +  +DNEA+Y IC R+L +  PTY  LN LVS  +S +T  LRF G LN D+ +   N++P+PR+HF +  +AP+ S     +  L+V E+T   F+  +M
Sbjct:  111 DLLETVLDVVRKEAEGCDCLQGFQLVHSLGGGTGSGMGTLLLANLTDEYPDRITATYSVVPSPTVSETVVEPYNATLSVNQLIENSIQSYCIDNEALYYICHRTLKLMAPTYGALNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMIPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNM 299          
The following BLAST results are available for this feature:
BLAST of CF504033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 419
Match NameE-valueIdentityDescription
TBB_ACHKL2.152e-3439.15Tubulin beta chain OS=Achlya klebsiana PE=2 SV=1[more]
TBB_USTVI2.810e-3439.15Tubulin beta chain OS=Ustilago violacea PE=2 SV=1[more]
TBB2_SUIBO4.793e-3436.51Tubulin beta-2 chain OS=Suillus bovinus GN=TUBB2 P... [more]
TBB2_GEOCN6.260e-3436.51Tubulin beta-2 chain OS=Geotrichum candidum PE=3 S... [more]
TBB_PLESA8.176e-3437.57Tubulin beta chain OS=Pleurotus sajor-caju PE=2 SV... [more]
TBB_ENCHE1.395e-3338.10Tubulin beta chain OS=Encephalitozoon hellem GN=TU... [more]
TBB_EUGGR4.058e-3338.10Tubulin beta chain OS=Euglena gracilis GN=TUBB PE=... [more]
TBB_ENCIN2.014e-3236.51Tubulin beta chain OS=Encephalitozoon intestinalis... [more]
TBB1_DAUCA5.859e-3244.37Tubulin beta-1 chain (Fragment) OS=Daucus carota G... [more]
TBB_BOMMO7.653e-3235.98Tubulin beta chain OS=Bombyx mori PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-521 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504033 ID=CF504033; Name=CF504033; organism=Citrus sinensis; type=EST; length=574bp
GGAAGGAGATTGTTGATCTATGCTTGGACCGGATCAGAAAACTTGCTGAT
AATTGCACTGGGCTACAAGGGTTCCTGGTTTTCAATGCTGTTGGAGGTGG
TACTGGCTCTGGACTTGGGTCACTTCTCTTGGAGCGTCTCTCTGTTGACT
ATGGAAAGAAATCAAAGCTTGGTTTCACTGTGTATCCTTCACCTCAGGTT
TCCACATCAGTTGTGGAACCTTACAACAGTGTTCTTTCAACACATTCCCT
CCTTGAGCACACCGATGTTGCTGTGCTTCTTGATAATGAAGCCATCTATG
ATATCTGCAGGCGCTCTCTTGACATTGAGCGCCCCACTTACACCAATCTC
AACCGACTTGTCTCTCAGGTGATCTCATCCCTCACTGCCTCTTTGAGGTT
TGATGGAGCTCTGAATGTGGATGTGACTGAGTTCCAGACCAATTTGGTTC
CCTATCCAAGGATCCATTTCATGCTCTCCTCTTATGCCCCAGTTATCTCT
GCAGAGAAGGCATTCCATGAGCAACTTTCAGTTGCTGAGATCACCAACAG
TGCTTTTGAGCCATCATCCATGAT
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