CF504033

Overview
NameCF504033
Unique NameCF504033
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB_STRPU (Tubulin beta chain (Fragment) OS=Strongylocentrotus purpuratus PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.305e-31
Identity = 63/133 (47.37%), Postives = 89/133 (66.92%), Query Frame = 3
Query:  174 FTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            F+V PSP+VS +VVEPYN+ LS H L+E+TD    +DNEA+YDIC R+L +  PTY +LN LVS  +S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S     +  L+V E+T   F+  +M
Sbjct:   12 FSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNM 144          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB_SCHPO (Tubulin beta chain OS=Schizosaccharomyces pombe GN=nda3 PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 2.227e-31
Identity = 67/189 (35.45%), Postives = 110/189 (58.20%), Query Frame = 3
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E+ D  LD +R+ A+ C  LQGF + +++                  +Y  +    F+V P+P+ S +VVEPYN+ LS H L+E++D    +DNEA+  I   +L I+ P+Y +LN LVS V++ +T S RF G LN D+ +   N+VP+PR+HF +  +AP+ +   +  + +SV E+T   F+ ++M
Sbjct:  111 ELADAVLDVVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVVEPYNATLSMHQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNM 299          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBBP_DROME (Probable tubulin beta chain CG32396 OS=Drosophila melanogaster GN=CG32396 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.275e-26
Identity = 55/188 (29.26%), Postives = 104/188 (55.32%), Query Frame = 3
Query:    9 IVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            I+D  L+  R+  ++   LQGF + +++                   Y       +   PSP +S  VVEPYN++LST +L+ ++ +   LDNEA++ IC R+L ++   Y ++N +V+  +S +T  LRF G LN  + +   N+VP+PR+HF++  +AP+++ ++    + +V+E+    F  +++
Sbjct:  111 ILDQVLENTRREVESVDSLQGFQLLHSIGGGTGSGLTSLIMEALVEQYPDNLLCNYVTIPSPNMSQVVVEPYNALLSTPALVNNSHLTFCLDNEALFQICNRNLKLKMSGYEHINHIVALTMSGITTCLRFPGQLNAGLRKIYVNMVPFPRLHFLIPGFAPLVTCKQQQFSKGTVSELVQQIFYSNNL 298          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG_COPC7 (Tubulin gamma chain OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=TUB4 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.016e-20
Identity = 52/166 (31.33%), Postives = 90/166 (54.22%), Query Frame = 3
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVIS 500
            + I +  ++ I + A+    L+GF+V +++                   + KK    ++V+P+ Q    VV+PYNS+L+   L+ H D  V+LDN A+  I    L ++ P++   N+LVS VI++ T +LR+ G +N D+     +L+P PR HF+++SY P  S
Sbjct:  112 ERIYEDIMEMIDREAEGSDSLEGFMVMHSIAGGTGSGLGSFLLERLNDKFPKKLIQTYSVFPNAQEGDVVVQPYNSLLALKRLVNHADSVVVLDNGALARISADRLHVQTPSFDQTNQLVSTVIAASTQTLRYPGYMNNDLVGIIASLIPTPRCHFLMTSYTPFTS 277          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG3_MAIZE (Tubulin gamma-3 chain (Fragment) OS=Zea mays GN=TUBG3 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.720e-20
Identity = 55/166 (33.13%), Postives = 90/166 (54.22%), Query Frame = 3
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTS--VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV 494
            ++ VD  +D + + AD    L+GF++ +++                   Y KK    ++V+P+ QV TS  VV+PYNS+L+   L  + D  V+LDN A+  I    L +  PT+   N LVS V+S+ T +LR+ G +N D+     +L+P PR HF+++ Y P+
Sbjct:   64 EQFVDDIMDMVDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPN-QVETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLSNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPL 228          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG2_ORYSJ (Tubulin gamma-2 chain OS=Oryza sativa subsp. japonica GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.720e-20
Identity = 53/165 (32.12%), Postives = 89/165 (53.94%), Query Frame = 3
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSP-QVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV 494
            +++VD  +D I + AD    L+GF++ +++                   Y KK    ++V+P+  + S  VV+PYNS+L+   L  + D  V+LDN A+  I    L +  PT+   N LVS V+S+ T +LR+ G +N D+     +L+P PR HF+++ Y P+
Sbjct:  112 EQVVDDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLANPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPL 276          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG2_MOUSE (Tubulin gamma-2 chain OS=Mus musculus GN=Tubg2 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.720e-20
Identity = 53/184 (28.80%), Postives = 102/184 (55.43%), Query Frame = 3
Query:   27 DRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSP-QVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEK-AFHEQLSVAEITNSAFEPSSM 572
            D I + AD    L+GF++ +++                   Y KK    ++V+P+  ++S  VV+PYNS+L+   L ++ D  V+LDN A+  I    L I+ P+++ +N+LVS ++S+ T +LR+ G +N D+     +L+P PR+HF+++ Y P+ + +  A   + +V ++     +P ++
Sbjct:  120 DIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNV 303          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG2_MAIZE (Tubulin gamma-2 chain OS=Zea mays GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.720e-20
Identity = 52/165 (31.52%), Postives = 89/165 (53.94%), Query Frame = 3
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSP-QVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV 494
            +++VD  +D + + AD    L+GF++ +++                   Y KK    ++V+P+  + S  VV+PYNS+L+   L  + D  V+LDN A+  I    L +  PT+   N LVS V+S+ T +LR+ G +N D+     +L+P PR HF+++ Y P+
Sbjct:  112 EQVVDDIMDMVDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLSNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPL 276          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG2_BOVIN (Tubulin gamma-2 chain OS=Bos taurus GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.720e-20
Identity = 53/184 (28.80%), Postives = 102/184 (55.43%), Query Frame = 3
Query:   27 DRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSP-QVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEK-AFHEQLSVAEITNSAFEPSSM 572
            D I + AD    L+GF++ +++                   Y KK    ++V+P+  ++S  VV+PYNS+L+   L ++ D  V+LDN A+  I    L I+ P+++ +N+LVS ++S+ T +LR+ G +N D+     +L+P PR+HF+++ Y P+ + +  A   + +V ++     +P ++
Sbjct:  120 DIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNV 303          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG1_MAIZE (Tubulin gamma-1 chain OS=Zea mays GN=TUBG1 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.720e-20
Identity = 55/166 (33.13%), Postives = 90/166 (54.22%), Query Frame = 3
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTS--VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV 494
            ++ VD  +D + + AD    L+GF++ +++                   Y KK    ++V+P+ QV TS  VV+PYNS+L+   L  + D  V+LDN A+  I    L +  PT+   N LVS V+S+ T +LR+ G +N D+     +L+P PR HF+++ Y P+
Sbjct:  112 EQFVDDIMDMVDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPN-QVETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLSNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPL 276          
The following BLAST results are available for this feature:
BLAST of CF504033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 419
Match NameE-valueIdentityDescription
TBB_STRPU1.305e-3147.37Tubulin beta chain (Fragment) OS=Strongylocentrotu... [more]
TBB_SCHPO2.227e-3135.45Tubulin beta chain OS=Schizosaccharomyces pombe GN... [more]
TBBP_DROME6.275e-2629.26Probable tubulin beta chain CG32396 OS=Drosophila ... [more]
TBG_COPC73.016e-2031.33Tubulin gamma chain OS=Coprinopsis cinerea (strain... [more]
TBG3_MAIZE6.720e-2033.13Tubulin gamma-3 chain (Fragment) OS=Zea mays GN=TU... [more]
TBG2_ORYSJ6.720e-2032.12Tubulin gamma-2 chain OS=Oryza sativa subsp. japon... [more]
TBG2_MOUSE6.720e-2028.80Tubulin gamma-2 chain OS=Mus musculus GN=Tubg2 PE=... [more]
TBG2_MAIZE6.720e-2031.52Tubulin gamma-2 chain OS=Zea mays GN=TUBG2 PE=2 SV... [more]
TBG2_BOVIN6.720e-2028.80Tubulin gamma-2 chain OS=Bos taurus GN=TUBG2 PE=2 ... [more]
TBG1_MAIZE6.720e-2033.13Tubulin gamma-1 chain OS=Zea mays GN=TUBG1 PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-521 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504033 ID=CF504033; Name=CF504033; organism=Citrus sinensis; type=EST; length=574bp
GGAAGGAGATTGTTGATCTATGCTTGGACCGGATCAGAAAACTTGCTGAT
AATTGCACTGGGCTACAAGGGTTCCTGGTTTTCAATGCTGTTGGAGGTGG
TACTGGCTCTGGACTTGGGTCACTTCTCTTGGAGCGTCTCTCTGTTGACT
ATGGAAAGAAATCAAAGCTTGGTTTCACTGTGTATCCTTCACCTCAGGTT
TCCACATCAGTTGTGGAACCTTACAACAGTGTTCTTTCAACACATTCCCT
CCTTGAGCACACCGATGTTGCTGTGCTTCTTGATAATGAAGCCATCTATG
ATATCTGCAGGCGCTCTCTTGACATTGAGCGCCCCACTTACACCAATCTC
AACCGACTTGTCTCTCAGGTGATCTCATCCCTCACTGCCTCTTTGAGGTT
TGATGGAGCTCTGAATGTGGATGTGACTGAGTTCCAGACCAATTTGGTTC
CCTATCCAAGGATCCATTTCATGCTCTCCTCTTATGCCCCAGTTATCTCT
GCAGAGAAGGCATTCCATGAGCAACTTTCAGTTGCTGAGATCACCAACAG
TGCTTTTGAGCCATCATCCATGAT
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