CF504033
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG1_HUMAN (Tubulin gamma-1 chain OS=Homo sapiens GN=TUBG1 PE=1 SV=2) HSP 1 Score: 97.0561 bits (240), Expect = 6.720e-20 Identity = 53/184 (28.80%), Postives = 102/184 (55.43%), Query Frame = 3 Query: 27 DRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSP-QVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEK-AFHEQLSVAEITNSAFEPSSM 572 D I + AD L+GF++ +++ Y KK ++V+P+ ++S VV+PYNS+L+ L ++ D V+LDN A+ I L I+ P+++ +N+LVS ++S+ T +LR+ G +N D+ +L+P PR+HF+++ Y P+ + + A + +V ++ +P ++ Sbjct: 120 DIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNV 303
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG1_BOVIN (Tubulin gamma-1 chain OS=Bos taurus GN=TUBG1 PE=2 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 6.720e-20 Identity = 53/184 (28.80%), Postives = 102/184 (55.43%), Query Frame = 3 Query: 27 DRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSP-QVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEK-AFHEQLSVAEITNSAFEPSSM 572 D I + AD L+GF++ +++ Y KK ++V+P+ ++S VV+PYNS+L+ L ++ D V+LDN A+ I L I+ P+++ +N+LVS ++S+ T +LR+ G +N D+ +L+P PR+HF+++ Y P+ + + A + +V ++ +P ++ Sbjct: 120 DIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNV 303
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG_USTVI (Tubulin gamma chain OS=Ustilago violacea GN=TUB4 PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 8.776e-20 Identity = 50/166 (30.12%), Postives = 87/166 (52.41%), Query Frame = 3 Query: 3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVIS 500 + + + ++ I + A+ L+GF++ +++ Y KK ++V+P VV+PYNS+LS L H D ++LDN A+ IC+ L ++ ++ N+LVS V+S+ T +LR+ G +N D+ +L+P PR HF+ +SY P S Sbjct: 112 ERVYEEVMEMIDREAEGSDSLEGFMLLHSIAGGTGSGLGSYLLERMNDRYPKKLIQTYSVFPDADSGDVVVQPYNSLLSMKRLTNHADSVIVLDNAALSKICQDRLHVQVASFAQTNQLVSTVMSASTQTLRYPGYMNNDLVGMIASLIPTPRCHFLTTSYTPFTS 277
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG2_HUMAN (Tubulin gamma-2 chain OS=Homo sapiens GN=TUBG2 PE=1 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 8.776e-20 Identity = 53/184 (28.80%), Postives = 101/184 (54.89%), Query Frame = 3 Query: 27 DRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYP-SPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEK-AFHEQLSVAEITNSAFEPSSM 572 D I + AD L+GF++ +++ Y KK ++V+P ++S VV+PYNS+L+ L ++ D V+LDN A+ I L I+ P+++ +N+LVS ++S+ T +LR+ G +N D+ +L+P PR+HF+++ Y P+ + + A + +V ++ +P ++ Sbjct: 120 DIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPYQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNV 303
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG1_XENLA (Tubulin gamma-1 chain OS=Xenopus laevis GN=tubg1 PE=2 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 8.776e-20 Identity = 53/184 (28.80%), Postives = 102/184 (55.43%), Query Frame = 3 Query: 27 DRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSP-QVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEK-AFHEQLSVAEITNSAFEPSSM 572 D I + AD L+GF++ +++ Y KK ++V+P+ ++S VV+PYNS+L+ L ++ D V+LDN A+ I L I+ P+++ +N+LVS ++S+ T +LR+ G +N D+ +L+P PR+HF+++ Y P+ + + A + +V ++ +P ++ Sbjct: 120 DIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSHVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNV 303
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG_SCHPO (Tubulin gamma chain OS=Schizosaccharomyces pombe GN=tug1 PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.146e-19 Identity = 56/164 (34.15%), Postives = 88/164 (53.66%), Query Frame = 3 Query: 3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQ-VSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAP 491 + I + +D I + AD L+GF + +++ Y KK ++V+P+ Q VS VV+PYNS+L+ L + D V+LDN A+ I L + PT+ N+LVS V+S+ T +LR+ G +N D+ +L+P PR HF+L+SY P Sbjct: 112 ERIFEDIMDMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTP 275
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG_CAEEL (Tubulin gamma chain OS=Caenorhabditis elegans GN=tbg-1 PE=1 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.146e-19 Identity = 57/191 (29.84%), Postives = 101/191 (52.88%), Query Frame = 3 Query: 3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVV-EPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572 +E+ + +D I + A+N L G L ++V + KK ++V+ + ST VV PYN VLS L+E+ D V+LDN A++ + + PT+ ++N LV++++S+ TA RF+ A+ + +L P+P +HF+ S+ +PV+ + F + SVA++T +P+SM Sbjct: 114 QEVQEKIMDIIIREAENTNNLDGILFTHSVSGGTGSGTGSLLLERLREAFPKKVIQTYSVFANSDTSTDVVVHPYNWVLSMQRLIENPDHVVVLDNAALHRLAAGKFKTDTPTFDHINSLVARIMSTSTAPYRFNSAMCPSIR--YLDLAPFPPMHFIQSAISPVVDPNENFTRKTSVADVTRFLLKPTSM 302
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG1_RAT (Tubulin gamma-1 chain OS=Rattus norvegicus GN=Tubg1 PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.146e-19 Identity = 53/184 (28.80%), Postives = 102/184 (55.43%), Query Frame = 3 Query: 27 DRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSP-QVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEK-AFHEQLSVAEITNSAFEPSSM 572 D I + AD L+GF++ +++ Y KK ++V+P+ ++S VV+PYNS+L+ L ++ D V+LDN A+ I L I+ P+++ +N+LVS ++S+ T +LR+ G +N D+ +L+P PR+HF+++ Y P+ + + A + +V ++ +P ++ Sbjct: 120 DIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNLIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNV 303
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG1_MOUSE (Tubulin gamma-1 chain OS=Mus musculus GN=Tubg1 PE=1 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.146e-19 Identity = 53/184 (28.80%), Postives = 102/184 (55.43%), Query Frame = 3 Query: 27 DRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSP-QVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEK-AFHEQLSVAEITNSAFEPSSM 572 D I + AD L+GF++ +++ Y KK ++V+P+ ++S VV+PYNS+L+ L ++ D V+LDN A+ I L I+ P+++ +N+LVS ++S+ T +LR+ G +N D+ +L+P PR+HF+++ Y P+ + + A + +V ++ +P ++ Sbjct: 120 DIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNLIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNV 303
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG_EMENI (Tubulin gamma chain OS=Emericella nidulans GN=mipA PE=2 SV=2) HSP 1 Score: 95.9005 bits (237), Expect = 1.497e-19 Identity = 51/155 (32.90%), Postives = 83/155 (53.55%), Query Frame = 3 Query: 27 DRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAP 491 D I + AD L+GF+ +++ + KK ++V+P Q + VV PYNS+L+ L ++ D V+LDN A+ I L ++ P++ NRLVS V+S+ T +LR+ G ++ D+ +L+P PR HF+L+SY P Sbjct: 120 DMIDREADGSDSLEGFMFLHSIAGGTGSGLGSFLLERMNDRFPKKLIQTYSVFPDTQAADVVVNPYNSLLAMRRLTQNADSVVVLDNAALSRIVADRLHVQEPSFQQTNRLVSTVMSASTTTLRYPGYMHNDLVGIIASLIPTPRSHFLLTSYTP 274 The following BLAST results are available for this feature:
BLAST of CF504033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 419
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504033 ID=CF504033; Name=CF504033; organism=Citrus sinensis; type=EST; length=574bpback to top |