CF504033
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG_DICDI (Tubulin gamma chain OS=Dictyostelium discoideum GN=tubC PE=1 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.497e-19 Identity = 57/187 (30.48%), Postives = 98/187 (52.41%), Query Frame = 3 Query: 15 DLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV-ISAEKAFHEQLSVAEITNSAFEPSSM 572 D D I + AD L+GFL+ +++ + KK ++V+P S+ VV+ YNSVL+ L+E+ D V+LDN A++ I +L I++PT N LVS V+S+ T +LR+ G +N D+ +L+P P+ HF+++ Y P+ I + + SV ++ +P ++ Sbjct: 116 DDIFDMIDREADGSESLEGFLLTHSISGGTGSGMGSYILERLNDRFPKKIIQTYSVFPDD--SSVVVQQYNSVLTLKRLIENADSTVVLDNNALHRIVGENLRIDQPTMDQTNSLVSTVMSASTTTLRYPGYMNNDLVGMLASLIPTPKCHFLITGYTPLSIDRQTESVRKTSVLDVMRRLLQPQNI 300
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG1_CANFA (Tubulin gamma-1 chain OS=Canis familiaris GN=TUBG1 PE=2 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.553e-19 Identity = 52/184 (28.26%), Postives = 100/184 (54.35%), Query Frame = 3 Query: 27 DRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSP-QVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEK-AFHEQLSVAEITNSAFEPSSM 572 D I + AD L+GF++ +++ Y KK ++V+P+ ++S VV+PYNS+L+ L ++ D V+LDN + I L I+ P++ +N+LVS ++S+ T +LR+ G +N D+ +L+P PR+HF+++ Y P+ + + A + +V ++ +P ++ Sbjct: 120 DIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTTLNRIATNRLHIQNPSFFQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNV 303
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG2_DROME (Tubulin gamma-2 chain OS=Drosophila melanogaster GN=gammaTub37C PE=1 SV=3) HSP 1 Score: 93.9745 bits (232), Expect = 5.688e-19 Identity = 52/193 (26.94%), Postives = 102/193 (52.85%), Query Frame = 3 Query: 3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSP-QVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVIS--AEKAFHEQLSVAEITNSAFEPSSM 572 +++ + D + + AD L+GF++ +++ + KK ++V+P+ ++S VV+PYNS+L+ L + D V+LDN A+ I L I+ PT+T +N LVS ++S T +LR+ +N ++ +L+P P++HF+++ Y P++S K + +V ++ +P +M Sbjct: 112 EKVQEEVFDILDREADGSDSLEGFVLCHSIAGGTGSGMGSYVLERLSERFPKKLIQTYSVFPNQDEISDVVVQPYNSILTLKRLTKCADSVVVLDNTALNRIATERLHIQTPTFTQINNLVSTIMSLSTTTLRYPSYMNNNLIGLTASLIPTPQLHFLMTGYTPLMSDCETKTSVRKTTVLDVMRRLLQPKNM 304
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG2_ARATH (Tubulin gamma-2 chain OS=Arabidopsis thaliana GN=TUBG2 PE=2 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 5.688e-19 Identity = 53/171 (30.99%), Postives = 89/171 (52.05%), Query Frame = 3 Query: 3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSP-QVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKA 512 K + + +D I + AD L+GF++ +++ Y KK ++V+P+ + S VV+PYNS+L+ L + D V+LDN A+ I L + PT+ N LVS V+S+ T +LR+ G +N D+ +L+P PR HF+++ Y P+ +A Sbjct: 112 KGVEEEIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLTNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQA 282
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG_PHYPA (Tubulin gamma chain OS=Physcomitrella patens GN=TUBG1 PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 7.429e-19 Identity = 53/171 (30.99%), Postives = 90/171 (52.63%), Query Frame = 3 Query: 3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSP-QVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKA 512 +++ + +D I + AD L+GF++ +++ Y KK ++V+P+ + S VV+PYNS+L+ L + D V+LDN A+ I L I PT+ N LVS V+S+ T +LR+ G +N D+ +L+P PR HF+++ Y P+ +A Sbjct: 112 EQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHIPNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLVASLIPTPRCHFLMTGYTPLTVERQA 282
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG1_ARATH (Tubulin gamma-1 chain OS=Arabidopsis thaliana GN=TUBG1 PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 7.429e-19 Identity = 53/171 (30.99%), Postives = 89/171 (52.05%), Query Frame = 3 Query: 3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSP-QVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKA 512 K + + +D I + AD L+GF++ +++ Y KK ++V+P+ + S VV+PYNS+L+ L + D V+LDN A+ I L + PT+ N LVS V+S+ T +LR+ G +N D+ +L+P PR HF+++ Y P+ +A Sbjct: 112 KGVEEEIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALGRIAVERLHLTNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQA 282
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG_SCHJP (Tubulin gamma chain OS=Schizosaccharomyces japonicus GN=tug1 PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 9.703e-19 Identity = 54/169 (31.95%), Postives = 91/169 (53.85%), Query Frame = 3 Query: 3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQ-VSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAE 506 ++I + +D I + A+ L+GF + +++ + KK ++V+P+ + VS VV+PYNS+L+ L + D V+LDN A+ I L I+ PT+ N+LVS V+S+ T +LR+ G +N D+ +L+P PR HF+ +SY P S + Sbjct: 112 EKIFEDIVDMIDREAEGSDSLEGFSLLHSIAGGTGSGLGSYLLERLNDRFPKKIVQTYSVFPNNRSVSDVVVQPYNSLLTLKRLTLNADAVVVLDNAALAHIAADRLHIQNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPTPRCHFLSTSYTPFTSQQ 280
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG_CHLRE (Tubulin gamma chain OS=Chlamydomonas reinhardtii GN=TUBG PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 9.703e-19 Identity = 52/169 (30.77%), Postives = 90/169 (53.25%), Query Frame = 3 Query: 9 IVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVV-EPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKA 512 + + LD I + A+ C L+GF + +++ Y KK ++V+P+ S+ VV +PYNS+L+ L H D V+LDN A+ I L + +P +N L++ V+++ T +LR+ G +N D+ +L+P PR HF+++ Y P ++AE A Sbjct: 114 VQETLLDMIDREAEYCDSLEGFNMCHSIAGGTGSGMGSYMLELISDRYSKKLIQTYSVFPNQSESSDVVVQPYNSLLTLKRLTLHADAVVVLDNTALDKIAVERLHLHKPDVQQINSLIATVMAASTTTLRYPGYMNNDLVGLVASLIPTPRCHFLMTGYTP-LTAENA 281
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG_PLAFO (Tubulin gamma chain OS=Plasmodium falciparum (isolate NF54) GN=G-TUB PE=2 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.267e-18 Identity = 48/159 (30.19%), Postives = 88/159 (55.35%), Query Frame = 3 Query: 24 LDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYP--SPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV 494 +D I + DN L+GF++ +++ +Y KK F+V+P + + S VV+PYNS+L+ L+ TD V++DN ++ I L + PT+ N ++S V+S+ T +LR+ G++N D+ ++L+ P+ HF+++SY P+ Sbjct: 119 IDMIDREVDNSDNLEGFILSHSIAGGTGSGMGSYLLELLNDNYSKKMIQTFSVFPLLTNESSDVVVQPYNSILTLKRLILSTDSVVVIDNTSLNRIFVERLKLNNPTFQQTNTIISNVMSASTTTLRYPGSMNNDMISLISSLIINPKCHFLITSYTPI 277
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG_ANEPH (Tubulin gamma chain OS=Anemia phyllitidis GN=TUBG PE=2 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 6.289e-18 Identity = 53/172 (30.81%), Postives = 91/172 (52.91%), Query Frame = 3 Query: 3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSP-QVSTSVVEPYNSVLSTHSLLE-HTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKA 512 +++ + +D I + AD L+GF++ +++ Y KK ++V+P+ + S VV+PYNS+L+ + L + D V+LDN A+ I L I PT+ N LVS V+S+ T +LR+ G +N D+ +L+P PR HF+++ Y P+ +A Sbjct: 112 EQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLNKRLTINADCVVVLDNTALNRIAVDRLHIPNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLVASLIPTPRCHFLMTGYTPLTVERQA 283 The following BLAST results are available for this feature:
BLAST of CF504033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 419
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504033 ID=CF504033; Name=CF504033; organism=Citrus sinensis; type=EST; length=574bpback to top |