CF504033

Overview
NameCF504033
Unique NameCF504033
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBA_EUPVA (Tubulin alpha chain OS=Euplotes vannus PE=3 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 3.867e-84
Identity = 156/190 (82.11%), Postives = 169/190 (88.95%), Query Frame = 3 
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            KEIVDL LDRIRKLADNCTGLQGF+ F++V                 VDYGKKSKL FTVYPSPQVST+VVEPYNSVLSTHSLLEHTDVAV+LDNEA+YDICRR+LDIERPTYTNLNRL++QVISSLTASLRFDGALNVD+TEFQTNLVPYPRIHFMLSSY PVISAEKA+HEQLSVAEITNS+FEP+SM
Sbjct:  112 KEIVDLVLDRIRKLADNCTGLQGFIGFHSVGGGTGSGLGSLLLERLSVDYGKKSKLCFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAVYDICRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDITEFQTNLVPYPRIHFMLSSYGPVISAEKAYHEQLSVAEITNSSFEPASM 301
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBA_PLAYO (Tubulin alpha chain OS=Plasmodium yoelii yoelii GN=PY01155 PE=2 SV=2)

HSP 1 Score: 308.916 bits (790), Expect = 1.125e-83
Identity = 151/190 (79.47%), Postives = 170/190 (89.47%), Query Frame = 3 
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            KE++D+CLDRIRKLADNCTGLQGFL+F+AV                 VDYGKKSKL F  +PSPQVST+VVEPYNSVLSTHSLLEHTDVA++LDNEAIYDIC+++LDIERPTYTNLNRL++QVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV+SAEKA+HEQLSV+EITNSAFEP++M
Sbjct:  112 KEVIDVCLDRIRKLADNCTGLQGFLMFSAVGGGTGSGFGCLMLERLSVDYGKKSKLNFCCWPSPQVSTAVVEPYNSVLSTHSLLEHTDVAIMLDNEAIYDICKKNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVVSAEKAYHEQLSVSEITNSAFEPANM 301
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBA_TRYBR (Tubulin alpha chain OS=Trypanosoma brucei rhodesiense PE=3 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 3.274e-83
Identity = 152/190 (80.00%), Postives = 169/190 (88.95%), Query Frame = 3 
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            KEIVDLCLDRIRKLADNCTGLQGFLV++AV                 VDYGKKSKLG+TVYPSPQVST+VVEPYNSVLSTHSLLEHTDVA +LDNEAIYD+ RR+LDIERPTYTNLNRL+ QV+SSLTASLRFDGALNVD+TEFQTNLVPYPRIHF+L+SYAPVISAEKA+HEQLSV+EI+N+ FEP+SM
Sbjct:  112 KEIVDLCLDRIRKLADNCTGLQGFLVYHAVGGGTGSGLGALLLERLSVDYGKKSKLGYTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAAMLDNEAIYDLTRRNLDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDLTEFQTNLVPYPRIHFVLTSYAPVISAEKAYHEQLSVSEISNAVFEPASM 301
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBA2_ELEIN (Tubulin alpha-2 chain OS=Eleusine indica GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 3.274e-83
Identity = 152/190 (80.00%), Postives = 165/190 (86.84%), Query Frame = 3 
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            +EIVD CLDRIRKLADNCTGLQGFLVFNAV                 VDYG+KSKLGFT+YPSPQ+ST+VVEPYNSVLSTHSL+EHTDV VLLDNEAIYDIC+RSLDIERPTYTNLNRL+SQVISSLT SLRFDGA+NVD+TEFQTNLVPYPRIHFMLSSYAP+IS EKA+HEQ SV EITNS FE SS+
Sbjct:  112 REIVDPCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGRKSKLGFTIYPSPQISTAVVEPYNSVLSTHSLIEHTDVVVLLDNEAIYDICKRSLDIERPTYTNLNRLISQVISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPIISVEKAYHEQHSVPEITNSVFESSSV 301
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBAD_PHYPO (Tubulin alpha-1A chain OS=Physarum polycephalum GN=ALTA PE=1 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 1.244e-82
Identity = 152/190 (80.00%), Postives = 166/190 (87.37%), Query Frame = 3 
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            KEIVDLCLDR+RKLAD CTGLQGFLVF++V                 VDYGKKSKL F VYPSPQVST+VVEPYNSVLSTHSLLEHTDVA +LDNEAIYDIC+R+LDI+RPTYTNLNRLV+QVISSLT SLRFDGALNVD+TEFQTNLVPYPRIHFML SYAPVISAEKA+HEQL+VAEITNS FEP++M
Sbjct:  112 KEIVDLCLDRVRKLADQCTGLQGFLVFHSVGGGTGSGFGSLLLERLSVDYGKKSKLDFCVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAFMLDNEAIYDICKRALDIDRPTYTNLNRLVAQVISSLTTSLRFDGALNVDITEFQTNLVPYPRIHFMLCSYAPVISAEKAYHEQLTVAEITNSVFEPANM 301
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBA1_ARATH (Tubulin alpha-1 chain OS=Arabidopsis thaliana GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 1.244e-82
Identity = 151/190 (79.47%), Postives = 164/190 (86.32%), Query Frame = 3 
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            +EIVD CL+R+RKLADNCTGLQGFLVFNAV                 VD+GKKSKLGFT+YPSPQVST+VVEPYNSVLSTHSLLEHTDV VLLDNEAIYDICRRSLDIERPTY+NLNRL+SQ ISSLT SLRFDGA+NVD+TEFQTNLVPYPRIHFMLSSYAPVIS+ KA+HEQ SV EIT S FEPS+M
Sbjct:  112 REIVDTCLERLRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDFGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVVVLLDNEAIYDICRRSLDIERPTYSNLNRLISQTISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQFSVPEITTSVFEPSNM 301
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBA_TRYCR (Tubulin alpha chain OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 8.063e-82
Identity = 149/190 (78.42%), Postives = 168/190 (88.42%), Query Frame = 3 
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            KEIVDLCLDRIRKLADNCTGLQGFLV++AV                 VDYGKKSKLG+TVYPSPQVST+VVEPYNSVLSTHSLLEHTDVA +LDNEAIYD+ R +LDIERPTYTNLNRL+ QV+S+LTASLRFDGALNVD+TEFQTNLVPYPRIHF+L++YAPVISAEKA+HEQLSV+EI+N+ FEP+SM
Sbjct:  112 KEIVDLCLDRIRKLADNCTGLQGFLVYHAVGGGTGSGLGALLLERLSVDYGKKSKLGYTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAAMLDNEAIYDLTRANLDIERPTYTNLNRLIGQVVSALTASLRFDGALNVDLTEFQTNLVPYPRIHFVLTTYAPVISAEKAYHEQLSVSEISNAVFEPASM 301
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBAE_PHYPO (Tubulin alpha-2B chain OS=Physarum polycephalum GN=ALTBE PE=2 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 1.375e-81
Identity = 149/190 (78.42%), Postives = 165/190 (86.84%), Query Frame = 3 
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            KE+VDLCLDR+RKLAD C+GLQGFLVF++V                 VDYGKKSKL F VYPSPQVST+VVEPYNSVLSTH LLEHTDVA +LDNEAIYD+C+RSLDIERP+Y NLNRLV+QVISSLT SLRFDGALNVD+TEFQTNLVPYPRIHFML+SYAPVISAEKAFHEQLSVAE+TN+ F+PSSM
Sbjct:  112 KELVDLCLDRVRKLADQCSGLQGFLVFHSVGGGTGSGFGSLLLERLSVDYGKKSKLDFCVYPSPQVSTAVVEPYNSVLSTHGLLEHTDVAFMLDNEAIYDLCKRSLDIERPSYANLNRLVAQVISSLTTSLRFDGALNVDITEFQTNLVPYPRIHFMLASYAPVISAEKAFHEQLSVAELTNTVFDPSSM 301
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBAN_PHYPO (Tubulin alpha-1B chain OS=Physarum polycephalum GN=ALTBN PE=2 SV=2)

HSP 1 Score: 299.671 bits (766), Expect = 6.826e-81
Identity = 148/190 (77.89%), Postives = 164/190 (86.32%), Query Frame = 3 
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            KEIVDLCLDR+RKLAD C+GLQGFLVF++V                 VDYGKKSKL F VYPSPQVST+VVEPYNSVLSTH LLEHTDVA +LDNEAIYD+C++SLDI+RP+Y NLNRLV+QVISSLT SLRFDGALNVD+ EFQTNLVPYPRIHFML+SYAPVISAEKAFHEQLSVAE+TN+ FEPSSM
Sbjct:  112 KEIVDLCLDRVRKLADQCSGLQGFLVFHSVGGGTGSGFGSLLLERLSVDYGKKSKLDFCVYPSPQVSTAVVEPYNSVLSTHGLLEHTDVAFMLDNEAIYDLCKKSLDIDRPSYANLNRLVAQVISSLTTSLRFDGALNVDINEFQTNLVPYPRIHFMLASYAPVISAEKAFHEQLSVAELTNTVFEPSSM 301
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBA2_PELFA (Tubulin alpha-2 chain OS=Pelvetia fastigiata GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 9.856e-80
Identity = 147/190 (77.37%), Postives = 162/190 (85.26%), Query Frame = 3 
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            KEIVDL LDRIRKLADNCTGLQGFLVF+A                  VDYG+KSKL F + P+PQV+T+VVEPYNSVLSTH+LLEHTD    LDNEA+YD+CRR+LDIERPTYTNLNRLV+QVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFML+SYAP+ISAEKA+HEQLSVAEITNS FEP+ M
Sbjct:  112 KEIVDLVLDRIRKLADNCTGLQGFLVFHATGGGTGSGLGSLLLERLSVDYGRKSKLSFAITPAPQVATAVVEPYNSVLSTHALLEHTDCTFCLDNEALYDVCRRNLDIERPTYTNLNRLVAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLTSYAPIISAEKAYHEQLSVAEITNSVFEPAGM 301
The following BLAST results are available for this feature:
BLAST of CF504033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 419
Match NameE-valueIdentityDescription
TBA_EUPVA3.867e-8482.11Tubulin alpha chain OS=Euplotes vannus PE=3 SV=1[more]
TBA_PLAYO1.125e-8379.47Tubulin alpha chain OS=Plasmodium yoelii yoelii GN... [more]
TBA_TRYBR3.274e-8380.00Tubulin alpha chain OS=Trypanosoma brucei rhodesie... [more]
TBA2_ELEIN3.274e-8380.00Tubulin alpha-2 chain OS=Eleusine indica GN=TUBA2 ... [more]
TBAD_PHYPO1.244e-8280.00Tubulin alpha-1A chain OS=Physarum polycephalum GN... [more]
TBA1_ARATH1.244e-8279.47Tubulin alpha-1 chain OS=Arabidopsis thaliana GN=T... [more]
TBA_TRYCR8.063e-8278.42Tubulin alpha chain OS=Trypanosoma cruzi PE=3 SV=1[more]
TBAE_PHYPO1.375e-8178.42Tubulin alpha-2B chain OS=Physarum polycephalum GN... [more]
TBAN_PHYPO6.826e-8177.89Tubulin alpha-1B chain OS=Physarum polycephalum GN... [more]
TBA2_PELFA9.856e-8077.37Tubulin alpha-2 chain OS=Pelvetia fastigiata GN=TU... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-521 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504033 ID=CF504033; Name=CF504033; organism=Citrus sinensis; type=EST; length=574bp
GGAAGGAGATTGTTGATCTATGCTTGGACCGGATCAGAAAACTTGCTGAT
AATTGCACTGGGCTACAAGGGTTCCTGGTTTTCAATGCTGTTGGAGGTGG
TACTGGCTCTGGACTTGGGTCACTTCTCTTGGAGCGTCTCTCTGTTGACT
ATGGAAAGAAATCAAAGCTTGGTTTCACTGTGTATCCTTCACCTCAGGTT
TCCACATCAGTTGTGGAACCTTACAACAGTGTTCTTTCAACACATTCCCT
CCTTGAGCACACCGATGTTGCTGTGCTTCTTGATAATGAAGCCATCTATG
ATATCTGCAGGCGCTCTCTTGACATTGAGCGCCCCACTTACACCAATCTC
AACCGACTTGTCTCTCAGGTGATCTCATCCCTCACTGCCTCTTTGAGGTT
TGATGGAGCTCTGAATGTGGATGTGACTGAGTTCCAGACCAATTTGGTTC
CCTATCCAAGGATCCATTTCATGCTCTCCTCTTATGCCCCAGTTATCTCT
GCAGAGAAGGCATTCCATGAGCAACTTTCAGTTGCTGAGATCACCAACAG
TGCTTTTGAGCCATCATCCATGAT
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