CF504033
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBE_MOUSE (Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.549e-16 Identity = 48/184 (26.09%), Postives = 92/184 (50.00%), Query Frame = 3 Query: 24 LDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDI---------------------------ERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV 494 L+++RK A+ C LQ F + +++ ++ + + VYPS + + PYNS+L+ L EH D + +DN++++DI + +D+ + + +N +V+ ++ SLT+S RF+G+LN+D+ E NLVP+P++H+++SS P+ Sbjct: 125 LEKLRKSAEQCDCLQCFFIIHSMGGGTGSGLGTFLLKVLEDEFPEVYRFVTAVYPSSEDDV-ITSPYNSMLAMKELNEHADCVLPIDNQSLFDIISK-IDLVVNSGKLGSAVKPKSLITSNMGAVKKHHKKPFDAMNNIVANLLLSLTSSARFEGSLNMDLNEISMNLVPFPKLHYLVSSLTPL 306
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBE_HUMAN (Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.023e-16 Identity = 47/187 (25.13%), Postives = 94/187 (50.27%), Query Frame = 3 Query: 15 DLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDI---------------------------ERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV 494 D L++ RK A++C LQ F + +++ ++ + + ++YPS + + PYNS+L+ L EH D + +DN++++DI + +D+ + + +N +V+ ++ +LT+S RF+G+LN+D+ E NLVP+P++H+++SS P+ Sbjct: 122 DQILEKFRKSAEHCDCLQCFFIIHSMGGGTGSGLGTFLLKVLEDEFPEVYRFVTSIYPSGEDDV-ITSPYNSILAMKELNEHADCVLPIDNQSLFDIISK-IDLMVNSGKLGTTVKPKSLVTSSSGALKKQHKKPFDAMNNIVANLLLNLTSSARFEGSLNMDLNEISMNLVPFPQLHYLVSSLTPL 306
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB3_ANEPH (Tubulin beta-3 chain (Fragment) OS=Anemia phyllitidis GN=TUBB3 PE=2 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 2.642e-16 Identity = 38/95 (40.00%), Postives = 60/95 (63.16%), Query Frame = 3 Query: 288 EAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572 EA+YDIC R+L + PT+ +LN L+S +S +T LRF G LN D+ + NL+P+PR+HF + +AP+ S + L+V E+T ++ +M Sbjct: 1 EALYDICFRTLKLVTPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNM 95
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG_ASHGO (Tubulin gamma chain OS=Ashbya gossypii GN=TUB4 PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 5.887e-16 Identity = 49/162 (30.25%), Postives = 84/162 (51.85%), Query Frame = 3 Query: 15 DLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVIS 500 D ++ I K D +GF + ++V Y KK ++V+PS + S VV+PYN++L+ L++++D +VL DN+A+ ++ R L +Y N+L++ V+SS+T SLRF + + + LVP P +HF+ S+ P S Sbjct: 118 DEFMNMIDKEIDATGNFEGFQLIHSVAGGTGSGLGSNLLEALSDRYHKKIVSTYSVFPSRE-SEVVVQPYNTILTLRRLIDNSDASVLFDNDALLNLTARVLRDSNTSYQQTNQLIASVMSSVTNSLRFPSYMYNSLPSIFSTLVPTPELHFLAPSFTPFTS 278
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG_CANGA (Tubulin gamma chain OS=Candida glabrata GN=TUB4 PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 6.508e-15 Identity = 45/159 (28.30%), Postives = 78/159 (49.06%), Query Frame = 3 Query: 15 DLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAP 491 D +D I + D+ +GF + ++V Y K ++V+PS Q S VV PYN+VL+ L E D +++ DN A+ ++ R+ +Y + N+L+S +SS+T SLRF + + + L+P P +HF+ ++ P Sbjct: 118 DRIMDIIDRELDSTDNFEGFQLLHSVAGGTGSGLGSSLLEALTDRYSKSFITTYSVFPSKQ-SEVVVGPYNTVLTLRRLCEDADASIIFDNNALLNLTARTFRDPNTSYEHTNQLISSALSSITNSLRFPSYMYNSMASIFSTLIPTPELHFLTPNFTP 275
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG_YEAST (Tubulin gamma chain OS=Saccharomyces cerevisiae GN=TUB4 PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 3.571e-13 Identity = 44/162 (27.16%), Postives = 81/162 (50.00%), Query Frame = 3 Query: 15 DLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVIS 500 D L++I K D+ +GF + ++V Y KK ++V+P+ + S VV+ YN++L+ L+E +D V+ DN ++ +I + + N+L+S +ISS+T S+RF + ++ + L+P P +HF+ S+ P S Sbjct: 117 DDILNKIDKEIDSTDNFEGFQLLHSVAGGTGSGLGSNLLEALCDRYPKKILTTYSVFPA-RSSEVVVQSYNTILALRRLIEDSDATVVFDNASLLNISGKVFRNPNIDLQHTNQLISTIISSVTNSIRFPSYMYSSMSSIYSTLIPSPELHFLSPSFTPFTS 277
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG_ENTHI (Tubulin gamma chain OS=Entamoeba histolytica PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 8.796e-12 Identity = 44/182 (24.18%), Postives = 80/182 (43.96%), Query Frame = 3 Query: 33 IRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVY--PSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572 I + ++C L+GF +++ Y K F+V +P V VV PYNS+L+ L+ V+ DN A+ DI ++ T ++N ++S +S+ TA+LRF L + +L P HF+++SY P+ + + S ++ +P ++ Sbjct: 119 IDREVEHCDSLEGFFFCHSICGGTGSGLGSKIMEMISEKYPKNILTSFSVMVKENPDV---VVSPYNSILTLRRLITECQSVVVFDNSALADITHTQFGVDEATVFDMNSIISSSMSAFTANLRFPSTLYNSLNSLMIHLCPSRFSHFLMTSYTPLRQVNQ-ISSRTSAIDVMKRLIQPQNI 296
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBA_POPEU (Tubulin alpha chain (Fragments) OS=Populus euphratica PE=1 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 5.702e-11 Identity = 35/50 (70.00%), Postives = 36/50 (72.00%), Query Frame = 3 Query: 312 RSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPR 461 RSLDIERPTYTNLNR FDGA+NVDVTEFQTNLVPYPR Sbjct: 15 RSLDIERPTYTNLNR--------------FDGAINVDVTEFQTNLVPYPR 50
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBG_CANAL (Tubulin gamma chain OS=Candida albicans GN=TUB4 PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 9.726e-11 Identity = 47/189 (24.87%), Postives = 93/189 (49.21%), Query Frame = 3 Query: 24 LDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLG-FTVYPSPQ-VSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDI----CRRSLDIERPT---YTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAF-HEQLSVAEITNSAFE 560 L+ I + D C L F +F++V YG K L F+++PS + S VV+PYN++L+ L++++D + N+++ I + +I+ + N+L++ V +S++ LRF G + + +NL+P P + F+ SS AP + + + +E + E++N ++ Sbjct: 146 LNLIDREVDKCDNLSNFQLFHSVAGGTGSGVGSKMLEVISDRYGHKKLLNTFSIFPSNEDTSDVVVQPYNTILTLKRLIDYSDATFVFHNDSLNRIENILFNNNSNIQHDDNDLFLGANKLIALVSASVSNPLRFPGYMYSSMESIVSNLIPTPDLKFLTSSIAPFSTQKHNYLNEYDMLLELSNDRYK 334 The following BLAST results are available for this feature:
BLAST of CF504033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 419
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504033 ID=CF504033; Name=CF504033; organism=Citrus sinensis; type=EST; length=574bpback to top |