CF504033

Overview
NameCF504033
Unique NameCF504033
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBA1_DROME (Tubulin alpha-1 chain OS=Drosophila melanogaster GN=alphaTub84B PE=2 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 5.062e-76
Identity = 137/189 (72.49%), Postives = 160/189 (84.66%), Query Frame = 3 
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSS 569
            KEIVDL LDRIRKLAD CTGLQGFL+F++                  VDYGKKSKL F +YP+PQVST+VVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNRL+ Q++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAPVISAEKA+HEQLSVAEITN+ FEP++
Sbjct:  112 KEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPAN 300
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBA_XENTR (Tubulin alpha chain OS=Xenopus tropicalis GN=tuba PE=2 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 8.635e-76
Identity = 136/189 (71.96%), Postives = 162/189 (85.71%), Query Frame = 3 
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSS 569
            KEI+D  LDRIRKLAD CTGLQGFLVF++                  VDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNRL+SQ++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L++YAPVISAEKA+HEQLSV+EITN+ FEP++
Sbjct:  112 KEIIDPVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVSEITNACFEPAN 300
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBA4A_RAT (Tubulin alpha-4A chain OS=Rattus norvegicus GN=Tuba4a PE=2 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 8.635e-76
Identity = 136/189 (71.96%), Postives = 162/189 (85.71%), Query Frame = 3 
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSS 569
            KEI+D  LDRIRKL+D CTGLQGFLVF++                  VDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNRL+SQ++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L++YAPVISAEKA+HEQLSVAEITN+ FEP++
Sbjct:  112 KEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBA4A_MOUSE (Tubulin alpha-4A chain OS=Mus musculus GN=Tuba4a PE=1 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 8.635e-76
Identity = 136/189 (71.96%), Postives = 162/189 (85.71%), Query Frame = 3 
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSS 569
            KEI+D  LDRIRKL+D CTGLQGFLVF++                  VDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNRL+SQ++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L++YAPVISAEKA+HEQLSVAEITN+ FEP++
Sbjct:  112 KEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBA4A_MACFA (Tubulin alpha-4A chain OS=Macaca fascicularis GN=TUBA4A PE=2 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 8.635e-76
Identity = 136/189 (71.96%), Postives = 162/189 (85.71%), Query Frame = 3 
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSS 569
            KEI+D  LDRIRKL+D CTGLQGFLVF++                  VDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNRL+SQ++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L++YAPVISAEKA+HEQLSVAEITN+ FEP++
Sbjct:  112 KEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBA4A_HUMAN (Tubulin alpha-4A chain OS=Homo sapiens GN=TUBA4A PE=1 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 8.635e-76
Identity = 136/189 (71.96%), Postives = 162/189 (85.71%), Query Frame = 3 
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSS 569
            KEI+D  LDRIRKL+D CTGLQGFLVF++                  VDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNRL+SQ++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L++YAPVISAEKA+HEQLSVAEITN+ FEP++
Sbjct:  112 KEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBA4A_BOVIN (Tubulin alpha-4A chain OS=Bos taurus GN=TUBA4A PE=1 SV=2)

HSP 1 Score: 282.722 bits (722), Expect = 8.635e-76
Identity = 136/189 (71.96%), Postives = 162/189 (85.71%), Query Frame = 3 
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSS 569
            KEI+D  LDRIRKL+D CTGLQGFLVF++                  VDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNRL+SQ++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L++YAPVISAEKA+HEQLSVAEITN+ FEP++
Sbjct:  112 KEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBA2_PATVU (Tubulin alpha-2/alpha-4 chain OS=Patella vulgata GN=TUB2 PE=2 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 8.635e-76
Identity = 134/189 (70.90%), Postives = 161/189 (85.19%), Query Frame = 3 
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSS 569
            KEI+DL LDRIRKLAD CTGLQGFL+F++                  VDYGKKSKL F +YP+PQ+ST+VVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNRL+ Q++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L++YAPVISAEKA+HEQL+VAEITN+ FEP++
Sbjct:  112 KEIIDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLEFAIYPAPQISTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 300
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBA1_APLCA (Tubulin alpha-1 chain OS=Aplysia californica PE=2 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 8.635e-76
Identity = 135/189 (71.43%), Postives = 162/189 (85.71%), Query Frame = 3 
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSS 569
            KE++DL LDRIRKLAD CTGLQGFL+F++                  VDYGKKSKL F+VYP+PQVST+VVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERP+YTNLNRL+ Q++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L++YAPVISAEKA+HEQLSVAEITN+ FEP++
Sbjct:  112 KELIDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSVYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPSYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBA_NOTVI (Tubulin alpha chain OS=Notophthalmus viridescens PE=2 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 2.512e-75
Identity = 135/189 (71.43%), Postives = 161/189 (85.19%), Query Frame = 3 
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSS 569
            KEI+D  LDR+RKLAD CTGLQGFLVF++                  VDYGKKSKL F +YP+PQVST+VVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERP+YTNLNRL+SQ++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L++YAPVISAEKA+HEQLSVAEITN+ FEP++
Sbjct:  112 KEIIDQVLDRMRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPSYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
The following BLAST results are available for this feature:
BLAST of CF504033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 419
Match NameE-valueIdentityDescription
TBA1_DROME5.062e-7672.49Tubulin alpha-1 chain OS=Drosophila melanogaster G... [more]
TBA_XENTR8.635e-7671.96Tubulin alpha chain OS=Xenopus tropicalis GN=tuba ... [more]
TBA4A_RAT8.635e-7671.96Tubulin alpha-4A chain OS=Rattus norvegicus GN=Tub... [more]
TBA4A_MOUSE8.635e-7671.96Tubulin alpha-4A chain OS=Mus musculus GN=Tuba4a P... [more]
TBA4A_MACFA8.635e-7671.96Tubulin alpha-4A chain OS=Macaca fascicularis GN=T... [more]
TBA4A_HUMAN8.635e-7671.96Tubulin alpha-4A chain OS=Homo sapiens GN=TUBA4A P... [more]
TBA4A_BOVIN8.635e-7671.96Tubulin alpha-4A chain OS=Bos taurus GN=TUBA4A PE=... [more]
TBA2_PATVU8.635e-7670.90Tubulin alpha-2/alpha-4 chain OS=Patella vulgata G... [more]
TBA1_APLCA8.635e-7671.43Tubulin alpha-1 chain OS=Aplysia californica PE=2 ... [more]
TBA_NOTVI2.512e-7571.43Tubulin alpha chain OS=Notophthalmus viridescens P... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-521 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504033 ID=CF504033; Name=CF504033; organism=Citrus sinensis; type=EST; length=574bp
GGAAGGAGATTGTTGATCTATGCTTGGACCGGATCAGAAAACTTGCTGAT
AATTGCACTGGGCTACAAGGGTTCCTGGTTTTCAATGCTGTTGGAGGTGG
TACTGGCTCTGGACTTGGGTCACTTCTCTTGGAGCGTCTCTCTGTTGACT
ATGGAAAGAAATCAAAGCTTGGTTTCACTGTGTATCCTTCACCTCAGGTT
TCCACATCAGTTGTGGAACCTTACAACAGTGTTCTTTCAACACATTCCCT
CCTTGAGCACACCGATGTTGCTGTGCTTCTTGATAATGAAGCCATCTATG
ATATCTGCAGGCGCTCTCTTGACATTGAGCGCCCCACTTACACCAATCTC
AACCGACTTGTCTCTCAGGTGATCTCATCCCTCACTGCCTCTTTGAGGTT
TGATGGAGCTCTGAATGTGGATGTGACTGAGTTCCAGACCAATTTGGTTC
CCTATCCAAGGATCCATTTCATGCTCTCCTCTTATGCCCCAGTTATCTCT
GCAGAGAAGGCATTCCATGAGCAACTTTCAGTTGCTGAGATCACCAACAG
TGCTTTTGAGCCATCATCCATGAT
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