CF504042

Overview
NameCF504042
Unique NameCF504042
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length447
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9884 contig Csv1_Contig9884:15..461. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF504042 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 8.555e-14
Identity = 37/85 (43.53%), Postives = 50/85 (58.82%), Query Frame = 3 
Query:  171 GSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 425
            GS+SV+  +    PDR  +       PP +L G  PGD+G+D  GL +DPE+   N + E++H RWAMLGA G   PE L + GV
Sbjct:   50 GSRSVAVSAVAADPDRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV 132
[Close]
BLAST of CF504042 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.752e-12
Identity = 35/61 (57.38%), Postives = 42/61 (68.85%), Query Frame = 3 
Query:  249 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 431
            PP YLTGE  GD G+D AGL+ADP TF + +  EV HCR +ML  +GC+ PELL  NG  F
Sbjct:  380 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELLG-NGAWF 439

HSP 2 Score: 68.1662 bits (165), Expect = 1.784e-11
Identity = 30/59 (50.85%), Postives = 41/59 (69.49%), Query Frame = 3 
Query:  240 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 416
            + EPP+ LTGE+P D G+D   L+ADP+ +A+ R  EV H R AML  +GC+ PELL +
Sbjct:  193 NAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELLGK 251
[Close]
BLAST of CF504042 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.779e-11
Identity = 39/106 (36.79%), Postives = 53/106 (50.00%), Query Frame = 3 
Query:   96 VGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 410
            VG    LAPS     +G       T S  V+  + W+            G+P P++L G  PGD+G+D  GL+  PE F + +E E+ HCRWAML   G + PE L
Sbjct:   13 VGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEWF-----------PGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL 107
The following BLAST results are available for this feature:
BLAST of CF504042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CB12_PETHY8.555e-1443.53Chlorophyll a-b binding protein, chloroplastic OS=... [more]
LH18_EUGGR2.752e-1257.38Light-harvesting complex I LH38 proteins (Fragment... [more]
CB121_HORVU6.779e-1136.79Chlorophyll a-b binding protein 1B-21, chloroplast... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-530 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504042 ID=CF504042; Name=CF504042; organism=Citrus sinensis; type=EST; length=447bp
CTCTTGCTTACACAGCTTCTATTGCTTACCCAGCTTCTGCTTCTCAATTA
AATTCCTCAATGGCAACCTCAACAATGGCTCTCTCCTCATCATTCGTCGG
CAAGGCCGTGAACCTCGCCCCTTCAGGCAATGAGCTGAGCAATGGTGGCC
GCATCTCCATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAGGTAGCCCG
TGGTACGGCCCGGACAGAGTCAAGTACTTGGGCCCACTCTCTGGCGAGCC
CCCAAGCTACTTGACTGGTGAGTTCCCTGGCGACTACGGTTGGGACACTG
CCGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAA
GTCATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCC
GGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCTGTGTGGT
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