CF504043

Overview
NameCF504043
Unique NameCF504043
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length524
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504043 vs. ExPASy Swiss-Prot
Match: CDPKI_ARATH (Calcium-dependent protein kinase 18 OS=Arabidopsis thaliana GN=CPK18 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.668e-14
Identity = 35/84 (41.67%), Postives = 53/84 (63.10%), Query Frame = 3
Query:  273 EDVKLHYTLGRELGRGEFGITYLCTENSTGLEFACKSIPKRKLVNDYYKDDVRREVEVMQYLSGQPNIVQFKAAYEDDQFVHIV 524
            +D    YT+G+ LG G+FG TY+ T+N+ G   A K I K K+      +DV+REV+++Q L G  N+V F  A+ED  +++IV
Sbjct:   65 KDFDNRYTIGKLLGHGQFGFTYVATDNNNGNRVAVKRIDKAKMTQPIEVEDVKREVKILQALGGHENVVGFHNAFEDKTYIYIV 148          
BLAST of CF504043 vs. ExPASy Swiss-Prot
Match: CDPKG_ARATH (Calcium-dependent protein kinase 16 OS=Arabidopsis thaliana GN=CPK16 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.805e-13
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 3
Query:  273 EDVKLHYTLGRELGRGEFGITYLCTENSTGLEFACKSIPKRKLVNDYYKDDVRREVEVMQYLSGQPNIVQFKAAYEDDQFVHIV 524
            +D    YT+G+ LG G+FG TY+ T+  TG   A K I K K+      +DV+REV+++Q L+G  N+V+F  A+ED   V+IV
Sbjct:  102 KDFDHRYTIGKLLGHGQFGYTYVATDKKTGDRVAVKKIDKAKMTIPIAVEDVKREVKILQALTGHENVVRFYNAFEDKNSVYIV 185          
BLAST of CF504043 vs. ExPASy Swiss-Prot
Match: PEPK2_ARATH (Serine/threonine-protein kinase PEPKR2 OS=Arabidopsis thaliana GN=PEPKR2 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.373e-12
Identity = 32/78 (41.03%), Postives = 45/78 (57.69%), Query Frame = 3
Query:  291 YTLGRELGRGEFGITYLCTENSTGLEFACKSIPKRKLVNDYYKDDVRREVEVMQYLSGQPNIVQFKAAYEDDQFVHIV 524
            Y  GR +G+G+FG   +C     G EFACK++ K +       + V REVE+MQ+LSG P +V   A YE+    H+V
Sbjct:  107 YVFGRNIGKGKFGSVRICKSRKNGTEFACKTLKKGE-------ETVHREVEIMQHLSGHPRVVTLHAVYEESDCFHLV 177          
BLAST of CF504043 vs. ExPASy Swiss-Prot
Match: CAMK1_ORYSJ (Calcium/calmodulin-dependent serine/threonine-protein kinase 1 OS=Oryza sativa subsp. japonica GN=CAMK1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.088e-11
Identity = 38/81 (46.91%), Postives = 49/81 (60.49%), Query Frame = 3
Query:  291 YTLGRELGRGEFGITYLCTENS---TGLEFACKSIPKRKLVNDYYKDDVRREVEVMQYLSGQPNIVQFKAAYEDDQFVHIV 524
            Y LGRE+GRG FG T   T       G + A K IPK K+      +DVRREV ++  L+G  N+VQF  AYED++ V+IV
Sbjct:  147 YELGREVGRGHFGYTCAATCKKGELKGDDVAVKVIPKAKMTTAIAIEDVRREVRILSSLAGHSNLVQFYDAYEDEENVYIV 227          
The following BLAST results are available for this feature:
BLAST of CF504043 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
CDPKI_ARATH7.668e-1441.67Calcium-dependent protein kinase 18 OS=Arabidopsis... [more]
CDPKG_ARATH3.805e-1342.86Calcium-dependent protein kinase 16 OS=Arabidopsis... [more]
PEPK2_ARATH9.373e-1241.03Serine/threonine-protein kinase PEPKR2 OS=Arabidop... [more]
CAMK1_ORYSJ2.088e-1146.91Calcium/calmodulin-dependent serine/threonine-prot... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-531 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504043 ID=CF504043; Name=CF504043; organism=Citrus sinensis; type=EST; length=524bp
ATTTTAAAGAATCAATTCAAAGGCAGGAACTGTGATGTGTAGTTGAATAC
ATCTGGGTCCTGCATATTCTTTGAAATTGCCCACCTGCAAAAGTCAAATC
CTGAGGTCCTGTCTCGCATCCTCTGTGCCGGTGGCGGCCAGAAATGGGTT
GCATTTTCAGCAAAGGCCAAGACTCAGACCACCCAGCAGCACGCCAACTC
CATGACAAAGGCCAAGATGGAGACTACCCAGCAGCACGCCAACTCCATGA
TGCAATTCTTTGTAAAGCTTATGAGGATGTTAAGTTACATTATACTCTTG
GTAGAGAATTGGGTAGGGGTGAATTTGGTATAACCTATCTTTGTACTGAG
AATTCAACCGGTTTGGAATTTGCTTGCAAGTCTATTCCTAAAAGAAAGCT
GGTAAATGATTATTATAAGGATGATGTAAGAAGAGAGGTTGAGGTAATGC
AATATTTGAGTGGGCAGCCCAACATAGTCCAATTCAAGGCTGCTTATGAG
GATGACCAATTTGTGCATATTGTT
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